HEADER TRANSPORT PROTEIN 17-JUN-09 3HWD TITLE CRYSTAL STRUCTURE OF SIDEROCALIN (NGAL, LIPOCALIN 2) K125A-K134A TITLE 2 MUTANT COMPLEXED WITH FERRIC ENTEROBACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NGAL, P25, 25 KDA ALPHA-2-MICROGLOBULIN-RELATED SUBUNIT OF COMPND 5 MMP-9, LIPOCALIN-2, ONCOGENE 24P3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNL, LCN2, NGAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3 KEYWDS LIPOCALIN, SIDEROPHORE, BETA-BARREL, DISULFIDE BOND, GLYCOPROTEIN, KEYWDS 2 PYRROLIDONE CARBOXYLIC ACID, SECRETED, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.C.CLIFTON REVDAT 3 13-OCT-21 3HWD 1 REMARK SEQADV REVDAT 2 27-FEB-19 3HWD 1 JRNL REVDAT 1 02-JUN-10 3HWD 0 JRNL AUTH M.C.CLIFTON,P.B.RUPERT,T.M.HOETTE,K.N.RAYMOND,R.J.ABERGEL, JRNL AUTH 2 R.K.STRONG JRNL TITL PARSING THE FUNCTIONAL SPECIFICITY OF SIDEROCALIN / JRNL TITL 2 LIPOCALIN 2 / NGAL FOR SIDEROPHORES AND RELATED JRNL TITL 3 SMALL-MOLECULE LIGANDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 15193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : USED SAME SET AS PREVIOUSLY REMARK 3 -DETERMINED STRUCTURE REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3865 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.478 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.327 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.878 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.829 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3968 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2606 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5406 ; 0.829 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6342 ; 0.792 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 4.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;32.290 ;23.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;14.689 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.971 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4474 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 840 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 629 ; 0.167 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2464 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1886 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2140 ; 0.077 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.104 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.123 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.058 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2556 ; 0.345 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1016 ; 0.033 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4079 ; 0.645 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1461 ; 0.501 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1327 ; 0.856 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 177 3 REMARK 3 1 C 5 C 177 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1017 ; 0.02 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 1224 ; 0.56 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1017 ; 0.03 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 1224 ; 0.47 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: USED PREVIOUSLY-DETERMINED REMARK 200 STRUCTURE REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 1L6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 20% PEG 3350, PH REMARK 280 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.65800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.91250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.91250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.82900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.91250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.91250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.48700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.91250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.91250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.82900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.91250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.91250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.48700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.65800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA C 184 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 PRO A -18 REMARK 465 LEU A -17 REMARK 465 GLY A -16 REMARK 465 LEU A -15 REMARK 465 LEU A -14 REMARK 465 TRP A -13 REMARK 465 LEU A -12 REMARK 465 GLY A -11 REMARK 465 LEU A -10 REMARK 465 ALA A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 GLY A -6 REMARK 465 ALA A -5 REMARK 465 LEU A -4 REMARK 465 HIS A -3 REMARK 465 ALA A -2 REMARK 465 GLN A -1 REMARK 465 ALA A 0 REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 MET B -19 REMARK 465 PRO B -18 REMARK 465 LEU B -17 REMARK 465 GLY B -16 REMARK 465 LEU B -15 REMARK 465 LEU B -14 REMARK 465 TRP B -13 REMARK 465 LEU B -12 REMARK 465 GLY B -11 REMARK 465 LEU B -10 REMARK 465 ALA B -9 REMARK 465 LEU B -8 REMARK 465 LEU B -7 REMARK 465 GLY B -6 REMARK 465 ALA B -5 REMARK 465 LEU B -4 REMARK 465 HIS B -3 REMARK 465 ALA B -2 REMARK 465 GLN B -1 REMARK 465 ALA B 0 REMARK 465 GLN B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 ASP B 45 REMARK 465 LYS B 46 REMARK 465 ASP B 47 REMARK 465 LYS B 73 REMARK 465 LYS B 74 REMARK 465 ASN B 116 REMARK 465 GLN B 117 REMARK 465 LEU B 144 REMARK 465 THR B 145 REMARK 465 SER B 146 REMARK 465 GLY B 178 REMARK 465 MET C -19 REMARK 465 PRO C -18 REMARK 465 LEU C -17 REMARK 465 GLY C -16 REMARK 465 LEU C -15 REMARK 465 LEU C -14 REMARK 465 TRP C -13 REMARK 465 LEU C -12 REMARK 465 GLY C -11 REMARK 465 LEU C -10 REMARK 465 ALA C -9 REMARK 465 LEU C -8 REMARK 465 LEU C -7 REMARK 465 GLY C -6 REMARK 465 ALA C -5 REMARK 465 LEU C -4 REMARK 465 HIS C -3 REMARK 465 ALA C -2 REMARK 465 GLN C -1 REMARK 465 ALA C 0 REMARK 465 GLN C 1 REMARK 465 ASP C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 465 GLY C 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 ARG A 43 CZ NH1 NH2 REMARK 470 ASP A 45 CG OD1 OD2 REMARK 470 LYS A 46 CB CG CD CE NZ REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 73 CD CE NZ REMARK 470 LYS A 74 CD CE NZ REMARK 470 TRP A 79 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 79 CZ3 CH2 REMARK 470 ILE A 80 CG1 CG2 CD1 REMARK 470 ARG A 81 CD NE CZ NH1 NH2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 GLU A 147 OE1 OE2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 PRO B 9 CB REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 GLN B 23 CG CD OE1 NE2 REMARK 470 GLN B 28 CG CD OE1 NE2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 VAL B 33 CG1 CG2 REMARK 470 VAL B 34 CG1 CG2 REMARK 470 ILE B 41 CG1 CG2 CD1 REMARK 470 LEU B 42 CD1 CD2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 GLN B 49 OE1 NE2 REMARK 470 LYS B 50 CD CE NZ REMARK 470 TYR B 52 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 55 CG1 CG2 CD1 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 59 NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 SER B 63 OG REMARK 470 SER B 68 OG REMARK 470 VAL B 69 CG1 CG2 REMARK 470 LEU B 70 CD1 CD2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 75 CE NZ REMARK 470 TRP B 79 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 79 CZ3 CH2 REMARK 470 ILE B 80 CG1 CG2 CD1 REMARK 470 ARG B 81 CD NE CZ NH1 NH2 REMARK 470 VAL B 84 CG1 CG2 REMARK 470 SER B 87 OG REMARK 470 GLN B 88 CD OE1 NE2 REMARK 470 ASN B 96 CG OD1 ND2 REMARK 470 ILE B 97 CG1 CG2 CD1 REMARK 470 LYS B 98 CD CE NZ REMARK 470 LEU B 103 CD1 CD2 REMARK 470 LEU B 107 CD1 CD2 REMARK 470 SER B 112 OG REMARK 470 THR B 113 OG1 CG2 REMARK 470 MET B 120 CE REMARK 470 VAL B 121 CG1 CG2 REMARK 470 GLN B 128 CG CD OE1 NE2 REMARK 470 ARG B 130 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 131 CG CD OE1 OE2 REMARK 470 LEU B 137 CD1 CD2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LEU B 148 CD1 CD2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 ASN B 151 CG OD1 ND2 REMARK 470 ILE B 153 CG1 CG2 CD1 REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 SER B 156 OG REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 SER B 158 OG REMARK 470 LEU B 159 CG CD1 CD2 REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 HIS B 165 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 170 CG1 CG2 REMARK 470 ILE B 172 CG1 CG2 CD1 REMARK 470 GLU C 44 OE1 OE2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 ASP C 47 CG OD1 OD2 REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 GLU C 57 CG CD OE1 OE2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 LYS C 73 CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 ASN C 96 OD1 ND2 REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 GLU C 143 CG CD OE1 OE2 REMARK 470 GLU C 147 CG CD OE1 OE2 REMARK 470 GLU C 150 OE1 OE2 REMARK 470 GLU C 163 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -40.32 73.46 REMARK 500 GLN A 117 -58.82 -127.25 REMARK 500 CYS A 175 -35.83 75.42 REMARK 500 TYR C 115 -39.61 73.68 REMARK 500 GLN C 117 -59.55 -125.92 REMARK 500 CYS C 175 -23.65 69.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 184 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HWE RELATED DB: PDB REMARK 900 RELATED ID: 3HWF RELATED DB: PDB REMARK 900 RELATED ID: 3HWG RELATED DB: PDB DBREF 3HWD A -19 178 UNP P80188 NGAL_HUMAN 1 198 DBREF 3HWD B -19 178 UNP P80188 NGAL_HUMAN 1 198 DBREF 3HWD C -19 178 UNP P80188 NGAL_HUMAN 1 198 SEQADV 3HWD SER A 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 3HWD ALA A 125 UNP P80188 LYS 145 ENGINEERED MUTATION SEQADV 3HWD ALA A 134 UNP P80188 LYS 154 ENGINEERED MUTATION SEQADV 3HWD SER B 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 3HWD ALA B 125 UNP P80188 LYS 145 ENGINEERED MUTATION SEQADV 3HWD ALA B 134 UNP P80188 LYS 154 ENGINEERED MUTATION SEQADV 3HWD SER C 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 3HWD ALA C 125 UNP P80188 LYS 145 ENGINEERED MUTATION SEQADV 3HWD ALA C 134 UNP P80188 LYS 154 ENGINEERED MUTATION SEQRES 1 A 198 MET PRO LEU GLY LEU LEU TRP LEU GLY LEU ALA LEU LEU SEQRES 2 A 198 GLY ALA LEU HIS ALA GLN ALA GLN ASP SER THR SER ASP SEQRES 3 A 198 LEU ILE PRO ALA PRO PRO LEU SER LYS VAL PRO LEU GLN SEQRES 4 A 198 GLN ASN PHE GLN ASP ASN GLN PHE GLN GLY LYS TRP TYR SEQRES 5 A 198 VAL VAL GLY LEU ALA GLY ASN ALA ILE LEU ARG GLU ASP SEQRES 6 A 198 LYS ASP PRO GLN LYS MET TYR ALA THR ILE TYR GLU LEU SEQRES 7 A 198 LYS GLU ASP LYS SER TYR ASN VAL THR SER VAL LEU PHE SEQRES 8 A 198 ARG LYS LYS LYS CYS ASP TYR TRP ILE ARG THR PHE VAL SEQRES 9 A 198 PRO GLY SER GLN PRO GLY GLU PHE THR LEU GLY ASN ILE SEQRES 10 A 198 LYS SER TYR PRO GLY LEU THR SER TYR LEU VAL ARG VAL SEQRES 11 A 198 VAL SER THR ASN TYR ASN GLN HIS ALA MET VAL PHE PHE SEQRES 12 A 198 LYS ALA VAL SER GLN ASN ARG GLU TYR PHE ALA ILE THR SEQRES 13 A 198 LEU TYR GLY ARG THR LYS GLU LEU THR SER GLU LEU LYS SEQRES 14 A 198 GLU ASN PHE ILE ARG PHE SER LYS SER LEU GLY LEU PRO SEQRES 15 A 198 GLU ASN HIS ILE VAL PHE PRO VAL PRO ILE ASP GLN CYS SEQRES 16 A 198 ILE ASP GLY SEQRES 1 B 198 MET PRO LEU GLY LEU LEU TRP LEU GLY LEU ALA LEU LEU SEQRES 2 B 198 GLY ALA LEU HIS ALA GLN ALA GLN ASP SER THR SER ASP SEQRES 3 B 198 LEU ILE PRO ALA PRO PRO LEU SER LYS VAL PRO LEU GLN SEQRES 4 B 198 GLN ASN PHE GLN ASP ASN GLN PHE GLN GLY LYS TRP TYR SEQRES 5 B 198 VAL VAL GLY LEU ALA GLY ASN ALA ILE LEU ARG GLU ASP SEQRES 6 B 198 LYS ASP PRO GLN LYS MET TYR ALA THR ILE TYR GLU LEU SEQRES 7 B 198 LYS GLU ASP LYS SER TYR ASN VAL THR SER VAL LEU PHE SEQRES 8 B 198 ARG LYS LYS LYS CYS ASP TYR TRP ILE ARG THR PHE VAL SEQRES 9 B 198 PRO GLY SER GLN PRO GLY GLU PHE THR LEU GLY ASN ILE SEQRES 10 B 198 LYS SER TYR PRO GLY LEU THR SER TYR LEU VAL ARG VAL SEQRES 11 B 198 VAL SER THR ASN TYR ASN GLN HIS ALA MET VAL PHE PHE SEQRES 12 B 198 LYS ALA VAL SER GLN ASN ARG GLU TYR PHE ALA ILE THR SEQRES 13 B 198 LEU TYR GLY ARG THR LYS GLU LEU THR SER GLU LEU LYS SEQRES 14 B 198 GLU ASN PHE ILE ARG PHE SER LYS SER LEU GLY LEU PRO SEQRES 15 B 198 GLU ASN HIS ILE VAL PHE PRO VAL PRO ILE ASP GLN CYS SEQRES 16 B 198 ILE ASP GLY SEQRES 1 C 198 MET PRO LEU GLY LEU LEU TRP LEU GLY LEU ALA LEU LEU SEQRES 2 C 198 GLY ALA LEU HIS ALA GLN ALA GLN ASP SER THR SER ASP SEQRES 3 C 198 LEU ILE PRO ALA PRO PRO LEU SER LYS VAL PRO LEU GLN SEQRES 4 C 198 GLN ASN PHE GLN ASP ASN GLN PHE GLN GLY LYS TRP TYR SEQRES 5 C 198 VAL VAL GLY LEU ALA GLY ASN ALA ILE LEU ARG GLU ASP SEQRES 6 C 198 LYS ASP PRO GLN LYS MET TYR ALA THR ILE TYR GLU LEU SEQRES 7 C 198 LYS GLU ASP LYS SER TYR ASN VAL THR SER VAL LEU PHE SEQRES 8 C 198 ARG LYS LYS LYS CYS ASP TYR TRP ILE ARG THR PHE VAL SEQRES 9 C 198 PRO GLY SER GLN PRO GLY GLU PHE THR LEU GLY ASN ILE SEQRES 10 C 198 LYS SER TYR PRO GLY LEU THR SER TYR LEU VAL ARG VAL SEQRES 11 C 198 VAL SER THR ASN TYR ASN GLN HIS ALA MET VAL PHE PHE SEQRES 12 C 198 LYS ALA VAL SER GLN ASN ARG GLU TYR PHE ALA ILE THR SEQRES 13 C 198 LEU TYR GLY ARG THR LYS GLU LEU THR SER GLU LEU LYS SEQRES 14 C 198 GLU ASN PHE ILE ARG PHE SER LYS SER LEU GLY LEU PRO SEQRES 15 C 198 GLU ASN HIS ILE VAL PHE PRO VAL PRO ILE ASP GLN CYS SEQRES 16 C 198 ILE ASP GLY HET NA A 179 1 HET NA C 179 1 HET NA C 180 1 HET NA C 181 1 HET NA C 182 1 HET NA C 183 1 HET NA C 184 1 HETNAM NA SODIUM ION FORMUL 4 NA 7(NA 1+) FORMUL 11 HOH *51(H2 O) HELIX 1 1 PRO A 12 VAL A 16 5 5 HELIX 2 2 ASN A 96 TYR A 100 5 5 HELIX 3 3 THR A 145 LEU A 159 1 15 HELIX 4 4 PRO A 162 ASN A 164 5 3 HELIX 5 5 PRO B 12 VAL B 16 5 5 HELIX 6 6 GLN B 23 GLN B 28 1 6 HELIX 7 7 ASN B 96 TYR B 100 5 5 HELIX 8 8 GLU B 147 LEU B 159 1 13 HELIX 9 9 PRO C 12 VAL C 16 5 5 HELIX 10 10 ASN C 96 TYR C 100 5 5 HELIX 11 11 THR C 145 LEU C 159 1 15 HELIX 12 12 PRO C 162 ASN C 164 5 3 SHEET 1 A10 ILE A 166 VAL A 167 0 SHEET 2 A10 GLY A 29 GLY A 38 -1 N LEU A 36 O VAL A 167 SHEET 3 A10 ARG A 130 GLY A 139 -1 O GLY A 139 N TYR A 32 SHEET 4 A10 HIS A 118 SER A 127 -1 N PHE A 123 O ALA A 134 SHEET 5 A10 LEU A 103 THR A 113 -1 N LEU A 107 O LYS A 124 SHEET 6 A10 GLU A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 A10 LYS A 75 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 A10 TYR A 64 ARG A 72 -1 N VAL A 66 O ARG A 81 SHEET 9 A10 ALA A 53 LEU A 58 -1 N ILE A 55 O THR A 67 SHEET 10 A10 GLY A 29 GLY A 38 -1 N GLY A 29 O TYR A 56 SHEET 1 B11 ILE B 166 VAL B 167 0 SHEET 2 B11 LEU B 36 GLY B 38 -1 N LEU B 36 O VAL B 167 SHEET 3 B11 ARG B 130 GLY B 139 -1 O ILE B 135 N ALA B 37 SHEET 4 B11 ALA B 119 SER B 127 -1 N ALA B 125 O TYR B 132 SHEET 5 B11 LEU B 103 THR B 113 -1 N ARG B 109 O PHE B 122 SHEET 6 B11 GLU B 91 LEU B 94 -1 N PHE B 92 O VAL B 108 SHEET 7 B11 ASP B 77 PRO B 85 -1 N VAL B 84 O THR B 93 SHEET 8 B11 TYR B 64 LEU B 70 -1 N TYR B 64 O PHE B 83 SHEET 9 B11 ALA B 53 LEU B 58 -1 N ILE B 55 O THR B 67 SHEET 10 B11 GLY B 29 VAL B 33 -1 N GLY B 29 O TYR B 56 SHEET 11 B11 ARG B 130 GLY B 139 -1 O GLY B 139 N TYR B 32 SHEET 1 C10 ILE C 166 VAL C 167 0 SHEET 2 C10 GLY C 29 GLY C 38 -1 N LEU C 36 O VAL C 167 SHEET 3 C10 ARG C 130 GLY C 139 -1 O GLY C 139 N TYR C 32 SHEET 4 C10 HIS C 118 SER C 127 -1 N PHE C 123 O ALA C 134 SHEET 5 C10 LEU C 103 THR C 113 -1 N LEU C 107 O LYS C 124 SHEET 6 C10 GLU C 91 LEU C 94 -1 N PHE C 92 O VAL C 108 SHEET 7 C10 LYS C 75 PRO C 85 -1 N VAL C 84 O THR C 93 SHEET 8 C10 TYR C 64 ARG C 72 -1 N VAL C 66 O ARG C 81 SHEET 9 C10 ALA C 53 LEU C 58 -1 N ILE C 55 O THR C 67 SHEET 10 C10 GLY C 29 GLY C 38 -1 N GLY C 29 O TYR C 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.04 SSBOND 2 CYS B 76 CYS B 175 1555 1555 2.02 SSBOND 3 CYS C 76 CYS C 175 1555 1555 2.00 CISPEP 1 ASP B 61 LYS B 62 0 5.33 SITE 1 AC1 1 LYS C 75 SITE 1 AC2 1 LYS A 75 SITE 1 AC3 1 ASN C 129 SITE 1 AC4 1 GLU C 91 CRYST1 115.825 115.825 119.316 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008634 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008381 0.00000 MASTER 519 0 7 12 31 0 4 6 0 0 0 48 END