HEADER HYDROLASE 12-JUN-09 3HU5 TITLE CRYSTAL STRUCTURE OF ISOCHORISMATASE FAMILY PROTEIN FROM DESULFOVIBRIO TITLE 2 VULGARIS SUBSP. VULGARIS STR. HILDENBOROUGH COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCHORISMATASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 STRAIN: HILDENBOROUGH; SOURCE 5 GENE: DVU_0033; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 2 STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, ISOCHORISMATASE KEYWDS 3 HYDROLASE. DESULFOVIBRIO VULGARIS, PSI-2, NEW YORK SGX RESEARCH KEYWDS 4 CENTER FOR STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,C.MORANO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 10-FEB-21 3HU5 1 AUTHOR JRNL LINK REVDAT 5 21-NOV-18 3HU5 1 AUTHOR REVDAT 4 01-NOV-17 3HU5 1 REMARK REVDAT 3 24-OCT-12 3HU5 1 AUTHOR REVDAT 2 13-JUL-11 3HU5 1 VERSN REVDAT 1 30-JUN-09 3HU5 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,C.MORANO,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ISOCHORISMATASE FAMILY PROTEIN FROM JRNL TITL 2 DESULFOVIBRIO VULGARIS SUBSP. VULGARIS STR. HILDENBOROUGH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3024 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3332 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2810 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3820 ; 2.337 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.973 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;30.561 ;23.148 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;15.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.970 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2104 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1876 ; 1.406 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3000 ; 2.198 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 934 ; 3.639 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 820 ; 5.171 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 195 REMARK 3 RESIDUE RANGE : A 205 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0202 49.1643 39.5729 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0468 REMARK 3 T33: 0.0039 T12: -0.0034 REMARK 3 T13: 0.0085 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.3822 L22: 0.6004 REMARK 3 L33: 0.2367 L12: -0.0267 REMARK 3 L13: -0.1811 L23: 0.0176 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.0136 S13: -0.0011 REMARK 3 S21: 0.1374 S22: -0.0118 S23: 0.0401 REMARK 3 S31: -0.0046 S32: 0.0467 S33: -0.0024 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 195 REMARK 3 RESIDUE RANGE : B 205 B 499 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0316 78.0932 36.0801 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.0261 REMARK 3 T33: 0.1417 T12: 0.0279 REMARK 3 T13: 0.0505 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.3616 L22: 0.7858 REMARK 3 L33: 0.1793 L12: -0.4673 REMARK 3 L13: -0.1497 L23: 0.2618 REMARK 3 S TENSOR REMARK 3 S11: -0.1537 S12: -0.0422 S13: -0.0775 REMARK 3 S21: 0.1660 S22: 0.0578 S23: 0.0195 REMARK 3 S31: 0.0447 S32: 0.0364 S33: 0.0959 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3HU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119171 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3180 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M TRIS REMARK 280 -HCL, 25% PEG 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.83050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.83050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.83150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.39500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.83150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.39500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.83050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.83150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.39500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.83050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.83150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.39500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 63.66300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.83050 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 31.83150 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -58.39500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 31.83150 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -58.39500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 52.83050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 196 REMARK 465 GLU A 197 REMARK 465 GLY A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 THR B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 196 REMARK 465 GLU B 197 REMARK 465 GLY B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 439 O HOH B 441 1.99 REMARK 500 O HOH A 500 O HOH A 501 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 432 O HOH B 441 5545 2.11 REMARK 500 O HOH A 315 O HOH B 441 5545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 28 CB CYS A 28 SG -0.106 REMARK 500 MSE A 113 CB MSE A 113 CG 0.381 REMARK 500 MSE B 113 CB MSE B 113 CG 0.327 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLY A 78 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU A 104 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 MSE A 113 CB - CG - SE ANGL. DEV. = -28.0 DEGREES REMARK 500 ASP A 127 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 159 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 MSE B 16 CG - SE - CE ANGL. DEV. = -14.2 DEGREES REMARK 500 MSE B 33 CB - CG - SE ANGL. DEV. = -19.1 DEGREES REMARK 500 MSE B 33 CG - SE - CE ANGL. DEV. = 23.1 DEGREES REMARK 500 MSE B 113 CB - CG - SE ANGL. DEV. = -24.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 70.24 -152.00 REMARK 500 PHE A 75 31.06 -83.49 REMARK 500 ASN A 138 -94.31 -116.06 REMARK 500 PRO B 26 -80.93 -32.97 REMARK 500 ALA B 27 46.33 -101.89 REMARK 500 ALA B 59 72.03 -154.47 REMARK 500 GLU B 77 -151.43 112.07 REMARK 500 ASN B 138 -94.11 -113.50 REMARK 500 ASP B 151 8.76 86.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11302D RELATED DB: TARGETDB DBREF 3HU5 A 4 196 UNP Q72G28 Q72G28_DESVH 2 194 DBREF 3HU5 B 4 196 UNP Q72G28 Q72G28_DESVH 2 194 SEQADV 3HU5 MSE A 1 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 SER A 2 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 LEU A 3 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 GLU A 197 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 GLY A 198 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS A 199 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS A 200 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS A 201 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS A 202 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS A 203 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS A 204 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 MSE B 1 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 SER B 2 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 LEU B 3 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 GLU B 197 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 GLY B 198 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS B 199 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS B 200 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS B 201 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS B 202 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS B 203 UNP Q72G28 EXPRESSION TAG SEQADV 3HU5 HIS B 204 UNP Q72G28 EXPRESSION TAG SEQRES 1 A 204 MSE SER LEU THR ARG ASN ARG THR VAL ALA LEU ALA ILE SEQRES 2 A 204 ILE ASP MSE GLN ASN ASP PHE VAL LEU PRO GLY ALA PRO SEQRES 3 A 204 ALA CYS VAL GLU GLY ALA MSE GLY THR VAL PRO VAL ILE SEQRES 4 A 204 ALA GLY LEU LEU ALA LYS ALA ARG ALA GLU GLY TRP MSE SEQRES 5 A 204 VAL LEU HIS VAL VAL ARG ALA HIS ARG ALA ASP GLY SER SEQRES 6 A 204 ASP ALA GLU LYS SER ARG GLU HIS LEU PHE LEU GLU GLY SEQRES 7 A 204 GLY GLY LEU CYS VAL ALA GLY THR PRO GLY ALA GLU ILE SEQRES 8 A 204 VAL ALA GLY LEU GLU PRO ALA SER GLY GLU THR VAL LEU SEQRES 9 A 204 VAL LYS THR ARG PHE SER ALA PHE MSE GLY THR GLU CYS SEQRES 10 A 204 ASP MSE LEU LEU ARG ARG ARG GLY VAL ASP THR LEU LEU SEQRES 11 A 204 VAL SER GLY THR GLN TYR PRO ASN CYS ILE ARG GLY THR SEQRES 12 A 204 ALA VAL ASP ALA PHE ALA LEU ASP TYR ASP VAL VAL VAL SEQRES 13 A 204 VAL THR ASP ALA CYS SER ALA ARG THR PRO GLY VAL ALA SEQRES 14 A 204 GLU SER ASN ILE ASN ASP MSE ARG ALA MSE GLY ILE THR SEQRES 15 A 204 CYS VAL PRO LEU THR ALA LEU ASP ASP VAL LEU ALA ARG SEQRES 16 A 204 ARG GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 204 MSE SER LEU THR ARG ASN ARG THR VAL ALA LEU ALA ILE SEQRES 2 B 204 ILE ASP MSE GLN ASN ASP PHE VAL LEU PRO GLY ALA PRO SEQRES 3 B 204 ALA CYS VAL GLU GLY ALA MSE GLY THR VAL PRO VAL ILE SEQRES 4 B 204 ALA GLY LEU LEU ALA LYS ALA ARG ALA GLU GLY TRP MSE SEQRES 5 B 204 VAL LEU HIS VAL VAL ARG ALA HIS ARG ALA ASP GLY SER SEQRES 6 B 204 ASP ALA GLU LYS SER ARG GLU HIS LEU PHE LEU GLU GLY SEQRES 7 B 204 GLY GLY LEU CYS VAL ALA GLY THR PRO GLY ALA GLU ILE SEQRES 8 B 204 VAL ALA GLY LEU GLU PRO ALA SER GLY GLU THR VAL LEU SEQRES 9 B 204 VAL LYS THR ARG PHE SER ALA PHE MSE GLY THR GLU CYS SEQRES 10 B 204 ASP MSE LEU LEU ARG ARG ARG GLY VAL ASP THR LEU LEU SEQRES 11 B 204 VAL SER GLY THR GLN TYR PRO ASN CYS ILE ARG GLY THR SEQRES 12 B 204 ALA VAL ASP ALA PHE ALA LEU ASP TYR ASP VAL VAL VAL SEQRES 13 B 204 VAL THR ASP ALA CYS SER ALA ARG THR PRO GLY VAL ALA SEQRES 14 B 204 GLU SER ASN ILE ASN ASP MSE ARG ALA MSE GLY ILE THR SEQRES 15 B 204 CYS VAL PRO LEU THR ALA LEU ASP ASP VAL LEU ALA ARG SEQRES 16 B 204 ARG GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3HU5 MSE A 16 MET SELENOMETHIONINE MODRES 3HU5 MSE A 33 MET SELENOMETHIONINE MODRES 3HU5 MSE A 52 MET SELENOMETHIONINE MODRES 3HU5 MSE A 113 MET SELENOMETHIONINE MODRES 3HU5 MSE A 119 MET SELENOMETHIONINE MODRES 3HU5 MSE A 176 MET SELENOMETHIONINE MODRES 3HU5 MSE A 179 MET SELENOMETHIONINE MODRES 3HU5 MSE B 16 MET SELENOMETHIONINE MODRES 3HU5 MSE B 33 MET SELENOMETHIONINE MODRES 3HU5 MSE B 52 MET SELENOMETHIONINE MODRES 3HU5 MSE B 113 MET SELENOMETHIONINE MODRES 3HU5 MSE B 119 MET SELENOMETHIONINE MODRES 3HU5 MSE B 176 MET SELENOMETHIONINE MODRES 3HU5 MSE B 179 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 33 8 HET MSE A 52 8 HET MSE A 113 8 HET MSE A 119 8 HET MSE A 176 8 HET MSE A 179 8 HET MSE B 16 8 HET MSE B 33 8 HET MSE B 52 8 HET MSE B 113 8 HET MSE B 119 8 HET MSE B 176 8 HET MSE B 179 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 HOH *424(H2 O) HELIX 1 1 GLN A 17 LEU A 22 1 6 HELIX 2 2 GLY A 31 GLY A 50 1 20 HELIX 3 3 GLU A 68 LEU A 76 5 9 HELIX 4 4 THR A 86 GLU A 90 5 5 HELIX 5 5 GLU A 116 ARG A 124 1 9 HELIX 6 6 ASN A 138 LEU A 150 1 13 HELIX 7 7 THR A 165 GLY A 180 1 16 HELIX 8 8 PRO A 185 THR A 187 5 3 HELIX 9 9 ALA A 188 ARG A 195 1 8 HELIX 10 10 GLN B 17 LEU B 22 1 6 HELIX 11 11 ALA B 32 GLY B 34 5 3 HELIX 12 12 THR B 35 GLY B 50 1 16 HELIX 13 13 GLU B 68 LEU B 76 5 9 HELIX 14 14 GLU B 116 GLY B 125 1 10 HELIX 15 15 ASN B 138 LEU B 150 1 13 HELIX 16 16 THR B 165 GLY B 180 1 16 HELIX 17 17 PRO B 185 THR B 187 5 3 HELIX 18 18 ALA B 188 ARG B 195 1 8 SHEET 1 A 6 THR A 102 VAL A 105 0 SHEET 2 A 6 MSE A 52 VAL A 57 1 N HIS A 55 O THR A 102 SHEET 3 A 6 VAL A 9 ILE A 14 1 N LEU A 11 O LEU A 54 SHEET 4 A 6 THR A 128 THR A 134 1 O LEU A 130 N ALA A 10 SHEET 5 A 6 ASP A 153 SER A 162 1 O ASP A 153 N LEU A 129 SHEET 6 A 6 THR A 182 VAL A 184 1 O THR A 182 N VAL A 156 SHEET 1 B 6 THR B 102 VAL B 105 0 SHEET 2 B 6 MSE B 52 VAL B 57 1 N HIS B 55 O THR B 102 SHEET 3 B 6 VAL B 9 ILE B 14 1 N LEU B 11 O LEU B 54 SHEET 4 B 6 THR B 128 THR B 134 1 O LEU B 130 N ALA B 10 SHEET 5 B 6 ASP B 153 SER B 162 1 O ASP B 153 N LEU B 129 SHEET 6 B 6 THR B 182 VAL B 184 1 O THR B 182 N VAL B 156 LINK C ASP A 15 N MSE A 16 1555 1555 1.32 LINK C MSE A 16 N GLN A 17 1555 1555 1.33 LINK C ALA A 32 N MSE A 33 1555 1555 1.31 LINK C MSE A 33 N GLY A 34 1555 1555 1.34 LINK C TRP A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N VAL A 53 1555 1555 1.31 LINK C PHE A 112 N MSE A 113 1555 1555 1.36 LINK C MSE A 113 N GLY A 114 1555 1555 1.34 LINK C ASP A 118 N MSE A 119 1555 1555 1.30 LINK C MSE A 119 N LEU A 120 1555 1555 1.32 LINK C ASP A 175 N MSE A 176 1555 1555 1.36 LINK C MSE A 176 N ARG A 177 1555 1555 1.34 LINK C ALA A 178 N MSE A 179 1555 1555 1.35 LINK C MSE A 179 N GLY A 180 1555 1555 1.33 LINK C ASP B 15 N MSE B 16 1555 1555 1.34 LINK C MSE B 16 N GLN B 17 1555 1555 1.32 LINK C ALA B 32 N MSE B 33 1555 1555 1.33 LINK C MSE B 33 N GLY B 34 1555 1555 1.33 LINK C TRP B 51 N MSE B 52 1555 1555 1.34 LINK C MSE B 52 N VAL B 53 1555 1555 1.35 LINK C PHE B 112 N MSE B 113 1555 1555 1.37 LINK C MSE B 113 N GLY B 114 1555 1555 1.31 LINK C ASP B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N LEU B 120 1555 1555 1.34 LINK C ASP B 175 N MSE B 176 1555 1555 1.32 LINK C MSE B 176 N ARG B 177 1555 1555 1.33 LINK C ALA B 178 N MSE B 179 1555 1555 1.34 LINK C MSE B 179 N GLY B 180 1555 1555 1.33 CISPEP 1 LEU A 76 GLU A 77 0 -10.63 CISPEP 2 GLU A 77 GLY A 78 0 -29.65 CISPEP 3 THR A 134 GLN A 135 0 -1.97 CISPEP 4 THR B 134 GLN B 135 0 -9.38 CRYST1 63.663 116.790 105.661 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009464 0.00000 MASTER 457 0 14 18 12 0 0 6 0 0 0 32 END