HEADER HORMONE 29-MAY-09 3HN4 TITLE CRYSTAL STRUCTURE OF THE NK2 FRAGMENT (28-289) OF HUMAN HEPATOCYTE TITLE 2 GROWTH FACTOR/SCATTER FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-289; COMPND 5 SYNONYM: SCATTER FACTOR, SF, HEPATOPOEITIN-A, HEPATOCYTE GROWTH COMPND 6 FACTOR ALPHA CHAIN, HEPATOCYTE GROWTH FACTOR BETA CHAIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HGF, HPTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-DUET1/TRX/DSBC KEYWDS HGF/SF, HORMONE/GROWTH FACTOR, DISULFIDE BOND, GLYCOPROTEIN, GROWTH KEYWDS 2 FACTOR, KRINGLE, SERINE PROTEASE HOMOLOG, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR W.D.TOLBERT REVDAT 5 13-OCT-21 3HN4 1 REMARK SEQADV REVDAT 4 24-JUL-19 3HN4 1 REMARK REVDAT 3 01-NOV-17 3HN4 1 REMARK REVDAT 2 01-SEP-10 3HN4 1 JRNL REVDAT 1 09-JUN-10 3HN4 0 JRNL AUTH W.D.TOLBERT,J.DAUGHERTY-HOLTROP,E.GHERARDI,G.VANDE WOUDE, JRNL AUTH 2 H.E.XU JRNL TITL STRUCTURAL BASIS FOR AGONISM AND ANTAGONISM OF HEPATOCYTE JRNL TITL 2 GROWTH FACTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 13264 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20624990 JRNL DOI 10.1073/PNAS.1005183107 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 603 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.923 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.446 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.312 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.883 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.824 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2227 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3016 ; 0.867 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 4.580 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;33.406 ;23.243 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;15.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.820 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 291 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1714 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1299 ; 0.199 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2110 ; 0.367 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 928 ; 0.301 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 906 ; 0.542 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-08; 17-DEC-08; 05-MAR-09; REMARK 200 30-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; Y REMARK 200 RADIATION SOURCE : APS; APS; APS; APS REMARK 200 BEAMLINE : 21-ID-D; 21-ID-D; 21-ID-G; 21-ID REMARK 200 -D REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12700; 1.12700; 0.97860; REMARK 200 1.07800 REMARK 200 MONOCHROMATOR : SI(111); SI(111); SI(111); REMARK 200 SI(111) REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; MARMOSAIC REMARK 200 300 MM CCD; MARMOSAIC 300 MM CCD; REMARK 200 MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, MOSFLM REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : 0.13400 REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : 0.44700 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1NK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM AMMONIUM SULFATE, 17-23% PEG REMARK 280 2000 OR 4000, 100 MM HEPES PH 8.0, 5% 2-METHYL-2,4-PENTANEDIOL, REMARK 280 0.5 MM BETA-OCTYL GLUCOSIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 307.78200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 153.89100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 230.83650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.94550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 384.72750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 307.78200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 153.89100 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.94550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 230.83650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 384.72750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 TYR A 28 REMARK 465 ALA A 29 REMARK 465 GLU A 30 REMARK 465 GLY A 31 REMARK 465 GLN A 32 REMARK 465 ARG A 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 57 93.23 66.50 REMARK 500 PRO A 81 21.50 -69.16 REMARK 500 ARG A 126 -76.28 3.67 REMARK 500 ASN A 127 -19.80 62.82 REMARK 500 LYS A 137 36.94 -142.40 REMARK 500 GLU A 174 -126.70 50.63 REMARK 500 SER A 207 32.50 -82.17 REMARK 500 GLU A 208 -60.20 -91.99 REMARK 500 GLU A 210 95.39 -65.91 REMARK 500 ALA A 214 -125.94 56.73 REMARK 500 ALA A 214 -126.25 56.73 REMARK 500 ASP A 252 -6.49 76.20 REMARK 500 ASP A 257 -123.62 43.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NK1 RELATED DB: PDB REMARK 900 NK1 STRUCTURE REMARK 900 RELATED ID: 1GP9 RELATED DB: PDB REMARK 900 NK1 STRUCTURE REMARK 900 RELATED ID: 1GMN RELATED DB: PDB REMARK 900 NK1-HEPARIN COMPLEXES REMARK 900 RELATED ID: 1GMO RELATED DB: PDB REMARK 900 NK1-HEPARIN COMPLEXES REMARK 900 RELATED ID: 1BHT RELATED DB: PDB REMARK 900 NK1 STRUCTURE REMARK 900 RELATED ID: 2HGF RELATED DB: PDB REMARK 900 NMR N-TERMINAL DOMAIN STRUCTURE REMARK 900 RELATED ID: 2QJ2 RELATED DB: PDB REMARK 900 NK1 STRUCTURE REMARK 900 RELATED ID: 2QJ4 RELATED DB: PDB REMARK 900 MOUSE NK1 STRUCTURE REMARK 900 RELATED ID: 3HMR RELATED DB: PDB REMARK 900 MOUSE NK2 N-TERMINAL DOMAIN STRUCTURE REMARK 900 RELATED ID: 3HMS RELATED DB: PDB REMARK 900 NK2 N-TERMINAL DOMAIN STRUCTURE REMARK 900 RELATED ID: 3HMT RELATED DB: PDB REMARK 900 NK2 N-TERMINAL DOMAIN STRUCTURE DBREF 3HN4 A 28 289 UNP P14210 HGF_HUMAN 28 289 SEQADV 3HN4 GLY A 26 UNP P14210 EXPRESSION TAG SEQADV 3HN4 SER A 27 UNP P14210 EXPRESSION TAG SEQADV 3HN4 GLU A 132 UNP P14210 LYS 132 ENGINEERED MUTATION SEQADV 3HN4 GLU A 134 UNP P14210 ARG 134 ENGINEERED MUTATION SEQADV 3HN4 ALA A 214 UNP P14210 CYS 214 ENGINEERED MUTATION SEQRES 1 A 264 GLY SER TYR ALA GLU GLY GLN ARG LYS ARG ARG ASN THR SEQRES 2 A 264 ILE HIS GLU PHE LYS LYS SER ALA LYS THR THR LEU ILE SEQRES 3 A 264 LYS ILE ASP PRO ALA LEU LYS ILE LYS THR LYS LYS VAL SEQRES 4 A 264 ASN THR ALA ASP GLN CYS ALA ASN ARG CYS THR ARG ASN SEQRES 5 A 264 LYS GLY LEU PRO PHE THR CYS LYS ALA PHE VAL PHE ASP SEQRES 6 A 264 LYS ALA ARG LYS GLN CYS LEU TRP PHE PRO PHE ASN SER SEQRES 7 A 264 MET SER SER GLY VAL LYS LYS GLU PHE GLY HIS GLU PHE SEQRES 8 A 264 ASP LEU TYR GLU ASN LYS ASP TYR ILE ARG ASN CYS ILE SEQRES 9 A 264 ILE GLY GLU GLY GLU SER TYR LYS GLY THR VAL SER ILE SEQRES 10 A 264 THR LYS SER GLY ILE LYS CYS GLN PRO TRP SER SER MET SEQRES 11 A 264 ILE PRO HIS GLU HIS SER PHE LEU PRO SER SER TYR ARG SEQRES 12 A 264 GLY LYS ASP LEU GLN GLU ASN TYR CYS ARG ASN PRO ARG SEQRES 13 A 264 GLY GLU GLU GLY GLY PRO TRP CYS PHE THR SER ASN PRO SEQRES 14 A 264 GLU VAL ARG TYR GLU VAL CYS ASP ILE PRO GLN CYS SER SEQRES 15 A 264 GLU VAL GLU CYS MET THR ALA ASN GLY GLU SER TYR ARG SEQRES 16 A 264 GLY LEU MET ASP HIS THR GLU SER GLY LYS ILE CYS GLN SEQRES 17 A 264 ARG TRP ASP HIS GLN THR PRO HIS ARG HIS LYS PHE LEU SEQRES 18 A 264 PRO GLU ARG TYR PRO ASP LYS GLY PHE ASP ASP ASN TYR SEQRES 19 A 264 CYS ARG ASN PRO ASP GLY GLN PRO ARG PRO TRP CYS TYR SEQRES 20 A 264 THR LEU ASP PRO HIS THR ARG TRP GLU TYR CYS ALA ILE SEQRES 21 A 264 LYS THR CYS ALA HET EPE A1001 15 HET MPD A1002 8 HET MPD A1003 8 HET SO4 A2001 5 HET SO4 A2002 5 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM SO4 SULFATE ION HETSYN EPE HEPES FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *106(H2 O) HELIX 1 1 THR A 38 HIS A 40 5 3 HELIX 2 2 THR A 66 ARG A 76 1 11 HELIX 3 3 ASP A 123 ILE A 125 5 3 SHEET 1 A 5 PHE A 42 LYS A 52 0 SHEET 2 A 5 VAL A 108 ASN A 121 -1 O LYS A 109 N ILE A 51 SHEET 3 A 5 ALA A 86 ASP A 90 -1 N PHE A 87 O TYR A 119 SHEET 4 A 5 GLN A 95 PHE A 99 -1 O PHE A 99 N ALA A 86 SHEET 5 A 5 LYS A 60 LYS A 63 -1 N LYS A 60 O TRP A 98 SHEET 1 B 2 TRP A 188 PHE A 190 0 SHEET 2 B 2 TYR A 198 VAL A 200 -1 O GLU A 199 N CYS A 189 SHEET 1 C 2 CYS A 211 MET A 212 0 SHEET 2 C 2 LYS A 286 THR A 287 1 O LYS A 286 N MET A 212 SHEET 1 D 2 TRP A 270 TYR A 272 0 SHEET 2 D 2 TRP A 280 TYR A 282 -1 O GLU A 281 N CYS A 271 SSBOND 1 CYS A 70 CYS A 96 1555 1555 2.03 SSBOND 2 CYS A 74 CYS A 84 1555 1555 2.04 SSBOND 3 CYS A 128 CYS A 206 1555 1555 2.04 SSBOND 4 CYS A 149 CYS A 189 1555 1555 2.03 SSBOND 5 CYS A 177 CYS A 201 1555 1555 2.03 SSBOND 6 CYS A 211 CYS A 288 1555 1555 2.03 SSBOND 7 CYS A 232 CYS A 271 1555 1555 2.03 SSBOND 8 CYS A 260 CYS A 283 1555 1555 2.03 CISPEP 1 ILE A 156 PRO A 157 0 0.98 CISPEP 2 THR A 239 PRO A 240 0 -2.17 SITE 1 AC1 10 SER A 161 GLU A 183 GLY A 185 GLY A 186 SITE 2 AC1 10 TRP A 188 PHE A 190 ARG A 197 TYR A 198 SITE 3 AC1 10 VAL A 200 HOH A3005 SITE 1 AC2 2 LYS A 60 ARG A 73 SITE 1 AC3 1 ILE A 231 SITE 1 AC4 4 ARG A 93 HIS A 241 ARG A 242 ARG A 279 SITE 1 AC5 6 THR A 83 GLY A 169 LYS A 170 ASP A 171 SITE 2 AC5 6 GLN A 173 HOH A3054 CRYST1 48.150 48.150 461.673 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020768 0.011991 0.000000 0.00000 SCALE2 0.000000 0.023981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002166 0.00000 MASTER 366 0 5 3 11 0 8 6 0 0 0 21 END