HEADER TRANSFERASE 20-MAY-09 3HJ1 TITLE MINOR EDITOSOME-ASSOCIATED TUTASE 1 WITH BOUND UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINOR EDITOSOME-ASSOCIATED TUTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: TB927.1.1330; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TUTASE, NUCLEOTIDYLTRANSFERASE, TRYPANOSOMA, EDITOSOME, RNA EDITING, KEYWDS 2 UTP-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.STAGNO,H.LUECKE REVDAT 4 01-NOV-17 3HJ1 1 REMARK REVDAT 3 13-JUL-11 3HJ1 1 VERSN REVDAT 2 18-AUG-10 3HJ1 1 JRNL REVDAT 1 12-MAY-10 3HJ1 0 JRNL AUTH J.STAGNO,I.APHASIZHEVA,J.BRUYSTENS,H.LUECKE,R.APHASIZHEV JRNL TITL STRUCTURE OF THE MITOCHONDRIAL EDITOSOME-LIKE COMPLEX JRNL TITL 2 ASSOCIATED TUTASE 1 REVEALS DIVERGENT MECHANISMS OF UTP JRNL TITL 3 SELECTION AND DOMAIN ORGANIZATION. JRNL REF J.MOL.BIOL. V. 399 464 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20403364 JRNL DOI 10.1016/J.JMB.2010.04.021 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 54332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 567 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.93000 REMARK 3 B22 (A**2) : -2.18000 REMARK 3 B33 (A**2) : 2.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.658 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6471 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8757 ; 1.401 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 779 ; 5.334 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 335 ;34.607 ;23.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1118 ;16.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;17.720 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4980 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3855 ; 0.614 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6239 ; 1.222 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2616 ; 2.313 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2513 ; 3.951 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 382 1 REMARK 3 1 B 1 B 382 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3097 ; 0.080 ; 0.050 REMARK 3 TIGHT THERMAL 1 B (A**2): 3097 ; 0.130 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 382 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 RESIDUE RANGE : A 407 A 683 REMARK 3 ORIGIN FOR THE GROUP (A): 59.7341 14.2973 2.3179 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0437 REMARK 3 T33: 0.0208 T12: -0.0003 REMARK 3 T13: -0.0247 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4090 L22: 0.3148 REMARK 3 L33: 0.3043 L12: 0.0959 REMARK 3 L13: -0.2797 L23: -0.1776 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.0006 S13: 0.0227 REMARK 3 S21: 0.0162 S22: 0.0017 S23: 0.0294 REMARK 3 S31: -0.0246 S32: -0.0202 S33: -0.0195 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 385 REMARK 3 RESIDUE RANGE : B 502 B 502 REMARK 3 RESIDUE RANGE : B 407 B 698 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9407 38.8755 28.7532 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0433 REMARK 3 T33: 0.0171 T12: 0.0012 REMARK 3 T13: -0.0260 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.4272 L22: 0.2314 REMARK 3 L33: 0.2949 L12: 0.1367 REMARK 3 L13: -0.2476 L23: -0.0787 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0119 S13: -0.0212 REMARK 3 S21: 0.0114 S22: -0.0122 S23: -0.0052 REMARK 3 S31: -0.0084 S32: 0.0118 S33: 0.0110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3HJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54366 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5280 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM ACETATE, 25% PEG 3350, REMARK 280 0.5MM UTP, PH 8.0, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.99950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT RELATED BY 2-FOLD NON-CRYSTALLOGRAPHIC REMARK 300 SYMMETRY (CHAINS A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 383 REMARK 465 VAL A 384 REMARK 465 PRO A 385 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 382 CB ASP A 382 CG 0.130 REMARK 500 ASP A 382 CG ASP A 382 OD2 0.223 REMARK 500 ASP A 382 C ASP A 382 O -0.150 REMARK 500 ASP B 382 CB ASP B 382 CG 0.135 REMARK 500 ASP B 382 C ASP B 382 O 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 352 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 352 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 177 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 177 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 352 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 352 NE - CZ - NH2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 382 O - C - N ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 152 88.08 -161.23 REMARK 500 GLU A 171 19.21 59.89 REMARK 500 ALA A 174 78.52 -157.67 REMARK 500 THR A 179 -156.81 -98.46 REMARK 500 ASN A 338 1.63 -154.23 REMARK 500 PHE B 152 88.04 -162.73 REMARK 500 ALA B 174 79.11 -158.41 REMARK 500 THR B 179 -158.92 -106.62 REMARK 500 ASN B 338 4.47 -154.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP B 382 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HIY RELATED DB: PDB REMARK 900 MINOR EDITOSOME-ASSOCIATED TUTASE 1 WITH BOUND UTP AND MG REMARK 900 RELATED ID: 3HJ4 RELATED DB: PDB REMARK 900 MINOR EDITOSOME-ASSOCIATED TUTASE 1 DBREF 3HJ1 A 1 385 UNP Q4GZ86 Q4GZ86_9TRYP 1 385 DBREF 3HJ1 B 1 385 UNP Q4GZ86 Q4GZ86_9TRYP 1 385 SEQADV 3HJ1 GLY A -1 UNP Q4GZ86 EXPRESSION TAG SEQADV 3HJ1 HIS A 0 UNP Q4GZ86 EXPRESSION TAG SEQADV 3HJ1 GLY B -1 UNP Q4GZ86 EXPRESSION TAG SEQADV 3HJ1 HIS B 0 UNP Q4GZ86 EXPRESSION TAG SEQRES 1 A 387 GLY HIS MET ASN VAL ALA LYS ARG GLU PHE ILE ARG GLY SEQRES 2 A 387 MET MET ALA HIS TYR ARG ALA SER LEU PRO PRO PRO GLU SEQRES 3 A 387 HIS SER VAL VAL ILE HIS GLU LEU GLN LYS ARG VAL LEU SEQRES 4 A 387 ASP ILE GLY MET LEU ALA VAL ASN LYS ALA HIS VAL GLU SEQRES 5 A 387 LEU PHE GLY SER HIS VAL SER GLY PHE CYS THR PRO HIS SEQRES 6 A 387 SER ASP ALA ASP ILE SER LEU THR TYR ARG ASN PHE SER SEQRES 7 A 387 PRO TRP LEU GLN GLY MET GLU ARG VAL ASP GLU GLN ASN SEQRES 8 A 387 ASN LYS ARG MET THR ARG PHE GLY LYS GLU ALA SER ALA SEQRES 9 A 387 MET GLY MET GLU ASP VAL ARG TYR ILE ARG ALA ARG ILE SEQRES 10 A 387 PRO VAL VAL GLN PHE THR ASP GLY VAL THR GLY ILE HIS SEQRES 11 A 387 CYS ASP VAL SER ILE GLY ASN ILE GLY GLY VAL GLU ASN SEQRES 12 A 387 SER LYS ILE LEU CYS ALA ILE ARG GLN VAL PHE PRO ASP SEQRES 13 A 387 PHE TYR GLY ALA TYR ILE HIS LEU VAL LYS ALA TRP GLY SEQRES 14 A 387 LYS ALA ARG GLU VAL ILE ALA PRO GLU ARG SER THR PHE SEQRES 15 A 387 ASN SER PHE THR VAL THR THR MET ALA LEU MET VAL LEU SEQRES 16 A 387 GLN GLU LEU GLY LEU LEU PRO VAL PHE SER LYS PRO THR SEQRES 17 A 387 GLY GLU PHE GLY GLU LEU THR VAL ALA ASP ALA GLU MET SEQRES 18 A 387 LEU LEU GLN GLU PHE LYS LEU PRO PRO ILE TYR ASP SER SEQRES 19 A 387 LEU HIS ASP ASP ASP GLU LYS LEU GLY GLU ALA VAL PHE SEQRES 20 A 387 PHE CYS LEU GLN ARG PHE ALA GLU TYR TYR ALA LYS TYR SEQRES 21 A 387 ASP PHE SER ALA GLY THR VAL SER LEU ILE HIS PRO ARG SEQRES 22 A 387 ARG HIS ARG THR VAL TYR GLU ARG VAL VAL ARG ARG HIS SEQRES 23 A 387 LEU GLU LEU LEU GLY SER ARG LYS ARG LEU GLU TRP GLU SEQRES 24 A 387 LYS HIS ILE ALA GLU HIS LYS GLU ASP GLY PRO LEU ASP SEQRES 25 A 387 GLU ASN ASP PHE SER ALA SER MET GLN ASN GLU THR THR SEQRES 26 A 387 GLN ARG PRO SER ASN SER PRO TYR VAL VAL GLU ASP PHE SEQRES 27 A 387 VAL ASN TYR VAL ASN CYS GLY ARG ARG VAL GLN ALA SER SEQRES 28 A 387 ARG VAL ARG HIS ILE GLN GLN GLU PHE ASN ARG LEU ARG SEQRES 29 A 387 GLU MET LEU ILE ASP LYS GLU SER GLU LEU LYS PHE ASP SEQRES 30 A 387 GLU VAL PHE ARG GLU SER ASP THR VAL PRO SEQRES 1 B 387 GLY HIS MET ASN VAL ALA LYS ARG GLU PHE ILE ARG GLY SEQRES 2 B 387 MET MET ALA HIS TYR ARG ALA SER LEU PRO PRO PRO GLU SEQRES 3 B 387 HIS SER VAL VAL ILE HIS GLU LEU GLN LYS ARG VAL LEU SEQRES 4 B 387 ASP ILE GLY MET LEU ALA VAL ASN LYS ALA HIS VAL GLU SEQRES 5 B 387 LEU PHE GLY SER HIS VAL SER GLY PHE CYS THR PRO HIS SEQRES 6 B 387 SER ASP ALA ASP ILE SER LEU THR TYR ARG ASN PHE SER SEQRES 7 B 387 PRO TRP LEU GLN GLY MET GLU ARG VAL ASP GLU GLN ASN SEQRES 8 B 387 ASN LYS ARG MET THR ARG PHE GLY LYS GLU ALA SER ALA SEQRES 9 B 387 MET GLY MET GLU ASP VAL ARG TYR ILE ARG ALA ARG ILE SEQRES 10 B 387 PRO VAL VAL GLN PHE THR ASP GLY VAL THR GLY ILE HIS SEQRES 11 B 387 CYS ASP VAL SER ILE GLY ASN ILE GLY GLY VAL GLU ASN SEQRES 12 B 387 SER LYS ILE LEU CYS ALA ILE ARG GLN VAL PHE PRO ASP SEQRES 13 B 387 PHE TYR GLY ALA TYR ILE HIS LEU VAL LYS ALA TRP GLY SEQRES 14 B 387 LYS ALA ARG GLU VAL ILE ALA PRO GLU ARG SER THR PHE SEQRES 15 B 387 ASN SER PHE THR VAL THR THR MET ALA LEU MET VAL LEU SEQRES 16 B 387 GLN GLU LEU GLY LEU LEU PRO VAL PHE SER LYS PRO THR SEQRES 17 B 387 GLY GLU PHE GLY GLU LEU THR VAL ALA ASP ALA GLU MET SEQRES 18 B 387 LEU LEU GLN GLU PHE LYS LEU PRO PRO ILE TYR ASP SER SEQRES 19 B 387 LEU HIS ASP ASP ASP GLU LYS LEU GLY GLU ALA VAL PHE SEQRES 20 B 387 PHE CYS LEU GLN ARG PHE ALA GLU TYR TYR ALA LYS TYR SEQRES 21 B 387 ASP PHE SER ALA GLY THR VAL SER LEU ILE HIS PRO ARG SEQRES 22 B 387 ARG HIS ARG THR VAL TYR GLU ARG VAL VAL ARG ARG HIS SEQRES 23 B 387 LEU GLU LEU LEU GLY SER ARG LYS ARG LEU GLU TRP GLU SEQRES 24 B 387 LYS HIS ILE ALA GLU HIS LYS GLU ASP GLY PRO LEU ASP SEQRES 25 B 387 GLU ASN ASP PHE SER ALA SER MET GLN ASN GLU THR THR SEQRES 26 B 387 GLN ARG PRO SER ASN SER PRO TYR VAL VAL GLU ASP PHE SEQRES 27 B 387 VAL ASN TYR VAL ASN CYS GLY ARG ARG VAL GLN ALA SER SEQRES 28 B 387 ARG VAL ARG HIS ILE GLN GLN GLU PHE ASN ARG LEU ARG SEQRES 29 B 387 GLU MET LEU ILE ASP LYS GLU SER GLU LEU LYS PHE ASP SEQRES 30 B 387 GLU VAL PHE ARG GLU SER ASP THR VAL PRO HET UTP A 501 29 HET UTP B 502 29 HETNAM UTP URIDINE 5'-TRIPHOSPHATE FORMUL 3 UTP 2(C9 H15 N2 O15 P3) FORMUL 5 HOH *567(H2 O) HELIX 1 1 VAL A 3 LEU A 20 1 18 HELIX 2 2 GLU A 24 VAL A 44 1 21 HELIX 3 3 GLY A 53 GLY A 58 1 6 HELIX 4 4 SER A 76 GLN A 80 5 5 HELIX 5 5 MET A 82 GLY A 104 1 23 HELIX 6 6 ASN A 135 VAL A 151 1 17 HELIX 7 7 PHE A 152 ARG A 170 1 19 HELIX 8 8 ALA A 174 SER A 178 5 5 HELIX 9 9 ASN A 181 GLY A 197 1 17 HELIX 10 10 THR A 213 PHE A 224 1 12 HELIX 11 11 PRO A 227 LEU A 233 5 7 HELIX 12 12 ASP A 236 TYR A 258 1 23 HELIX 13 13 HIS A 273 HIS A 303 1 31 HELIX 14 14 LYS A 304 GLY A 307 5 4 HELIX 15 15 ASP A 310 GLN A 324 1 15 HELIX 16 16 GLN A 347 SER A 349 5 3 HELIX 17 17 ARG A 350 ILE A 366 1 17 HELIX 18 18 LYS A 368 LEU A 372 5 5 HELIX 19 19 LYS A 373 PHE A 378 1 6 HELIX 20 20 VAL B 3 LEU B 20 1 18 HELIX 21 21 GLU B 24 VAL B 44 1 21 HELIX 22 22 GLY B 53 GLY B 58 1 6 HELIX 23 23 MET B 82 GLY B 104 1 23 HELIX 24 24 ASN B 135 VAL B 151 1 17 HELIX 25 25 PHE B 152 ARG B 170 1 19 HELIX 26 26 ALA B 174 SER B 178 5 5 HELIX 27 27 ASN B 181 GLY B 197 1 17 HELIX 28 28 THR B 213 PHE B 224 1 12 HELIX 29 29 PRO B 227 LEU B 233 5 7 HELIX 30 30 ASP B 236 TYR B 258 1 23 HELIX 31 31 HIS B 273 HIS B 303 1 31 HELIX 32 32 LYS B 304 GLY B 307 5 4 HELIX 33 33 ASP B 310 GLN B 324 1 15 HELIX 34 34 GLN B 347 SER B 349 5 3 HELIX 35 35 ARG B 350 ASP B 367 1 18 HELIX 36 36 LYS B 368 LEU B 372 5 5 HELIX 37 37 LYS B 373 PHE B 378 1 6 SHEET 1 A 5 HIS A 48 PHE A 52 0 SHEET 2 A 5 ALA A 66 THR A 71 -1 O SER A 69 N GLU A 50 SHEET 3 A 5 HIS A 128 ILE A 133 1 O HIS A 128 N ALA A 66 SHEET 4 A 5 VAL A 117 THR A 121 -1 N PHE A 120 O CYS A 129 SHEET 5 A 5 GLU A 106 ILE A 111 -1 N GLU A 106 O THR A 121 SHEET 1 B 5 HIS B 48 PHE B 52 0 SHEET 2 B 5 ALA B 66 THR B 71 -1 O SER B 69 N GLU B 50 SHEET 3 B 5 HIS B 128 ILE B 133 1 O HIS B 128 N ALA B 66 SHEET 4 B 5 VAL B 117 THR B 121 -1 N PHE B 120 O CYS B 129 SHEET 5 B 5 GLU B 106 ILE B 111 -1 N ILE B 111 O VAL B 117 CISPEP 1 GLY A 307 PRO A 308 0 -5.14 CISPEP 2 GLY B 307 PRO B 308 0 -4.75 SITE 1 AC1 24 PHE A 52 GLY A 53 SER A 54 ASP A 65 SITE 2 AC1 24 ASP A 67 GLY A 138 ASN A 141 SER A 142 SITE 3 AC1 24 LYS A 164 LYS A 168 ASN A 181 SER A 182 SITE 4 AC1 24 PHE A 183 ASP A 335 CYS A 342 ARG A 345 SITE 5 AC1 24 HOH A 415 HOH A 423 HOH A 434 HOH A 494 SITE 6 AC1 24 HOH A 584 HOH A 645 HOH A 648 HOH A 650 SITE 1 AC2 25 PHE B 52 GLY B 53 SER B 54 ASP B 65 SITE 2 AC2 25 ASP B 67 GLY B 138 ASN B 141 SER B 142 SITE 3 AC2 25 LYS B 164 LYS B 168 ASN B 181 SER B 182 SITE 4 AC2 25 PHE B 183 ASP B 335 CYS B 342 ARG B 345 SITE 5 AC2 25 HOH B 447 HOH B 462 HOH B 479 HOH B 480 SITE 6 AC2 25 HOH B 549 HOH B 605 HOH B 614 HOH B 629 SITE 7 AC2 25 HOH B 645 CRYST1 62.873 101.999 66.124 90.00 111.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015905 0.000000 0.006312 0.00000 SCALE2 0.000000 0.009804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016270 0.00000 MASTER 406 0 2 37 10 0 13 6 0 0 0 60 END