HEADER LIGASE 19-MAY-09 3HID TITLE CRYSTAL STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM YERSINIA PESTIS TITLE 2 CO92 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMP--ASPARTATE LIGASE, ADSS, AMPSASE; COMPND 5 EC: 6.3.4.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS CO92; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92 / BIOVAR ORIENTALIS; SOURCE 5 GENE: GI:16120713, PURA, Y0635, YPO0378, YP_0534; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19C KEYWDS NIAID STRUCTURAL GENOMICS, ADENYLOSUCCINATE SYNTHETASE, VIRULENCE KEYWDS 2 ASSOCIATED FACTOR, PURA, PURINE RIBONUCLEOTIDE BIOSYNTHESIS, KEYWDS 3 CYTOPLASM, GTP-BINDING, LIGASE, MAGNESIUM, METAL-BINDING, KEYWDS 4 NUCLEOTIDE-BINDING, PURINE BIOSYNTHESIS, CENTER FOR STRUCTURAL KEYWDS 5 GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.ZHOU,S.PETERSON,W.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 01-NOV-17 3HID 1 REMARK REVDAT 2 30-JUN-09 3HID 1 AUTHOR JRNL REVDAT 1 02-JUN-09 3HID 0 JRNL AUTH R.ZHANG,M.ZHOU,S.PETERSON,W.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE ADENYLOSUCCINATE SYNTHETASE JRNL TITL 2 FROM YERSINIA PESTIS CO92 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 60809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3235 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 651 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3348 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2266 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4536 ; 1.661 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5526 ; 0.975 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;34.880 ;23.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;12.041 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;21.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3725 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 657 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2093 ; 1.424 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 873 ; 0.614 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3372 ; 2.227 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1255 ; 3.397 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1164 ; 4.745 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5614 ; 1.738 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 704 ; 6.800 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5558 ; 3.415 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60809 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 56.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 30% W/V PEG REMARK 280 8000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.58300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.45150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.45150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.37450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.45150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.45150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.79150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.45150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.45150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 149.37450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.45150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.45150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.79150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.58300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 68.90300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 68.90300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 99.58300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 123 REMARK 465 ALA A 124 REMARK 465 LYS A 125 REMARK 465 ALA A 126 REMARK 465 ILE A 127 REMARK 465 GLY A 128 REMARK 465 THR A 129 REMARK 465 THR A 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 282 CD ARG A 307 2.07 REMARK 500 NH2 ARG A 304 O HOH A 676 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 764 O HOH A 764 8665 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 274 CB VAL A 274 CG2 -0.130 REMARK 500 GLU A 289 CG GLU A 289 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 307 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 307 NE - CZ - NH1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 307 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 MET A 350 CG - SD - CE ANGL. DEV. = -17.2 DEGREES REMARK 500 ASP A 428 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 428 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 11 -125.85 -119.45 REMARK 500 GLU A 26 -35.53 -37.15 REMARK 500 HIS A 38 47.08 -93.45 REMARK 500 LEU A 55 -51.69 -125.09 REMARK 500 ASN A 64 11.62 56.72 REMARK 500 ARG A 90 -157.66 -83.66 REMARK 500 ALA A 121 -9.13 -53.91 REMARK 500 GLN A 225 -143.58 60.42 REMARK 500 PHE A 279 79.47 -155.66 REMARK 500 ASN A 284 55.52 -99.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG6 A 433 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG6 A 433 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00422 RELATED DB: TARGETDB DBREF 3HID A 1 432 UNP Q8ZIV7 PURA_YERPE 1 432 SEQRES 1 A 432 MET GLY LYS ASN VAL VAL VAL LEU GLY THR GLN TRP GLY SEQRES 2 A 432 ASP GLU GLY LYS GLY LYS VAL VAL ASP LEU LEU THR GLU SEQRES 3 A 432 ARG ALA LYS TYR VAL VAL ARG TYR GLN GLY GLY HIS ASN SEQRES 4 A 432 ALA GLY HIS THR LEU VAL ILE ASN GLY GLU LYS THR VAL SEQRES 5 A 432 LEU HIS LEU ILE PRO SER GLY ILE LEU ARG GLU ASN VAL SEQRES 6 A 432 ILE SER ILE ILE GLY ASN GLY VAL VAL LEU ALA PRO ASP SEQRES 7 A 432 ALA LEU MET LYS GLU MET THR GLU LEU GLU ALA ARG GLY SEQRES 8 A 432 VAL PRO VAL ARG GLU ARG LEU LEU LEU SER GLU ALA CYS SEQRES 9 A 432 PRO LEU ILE LEU PRO TYR HIS VAL ALA LEU ASP ASN ALA SEQRES 10 A 432 ARG GLU LYS ALA ARG GLY ALA LYS ALA ILE GLY THR THR SEQRES 11 A 432 GLY ARG GLY ILE GLY PRO ALA TYR GLU ASP LYS VAL ALA SEQRES 12 A 432 ARG ARG GLY LEU ARG VAL SER ASP LEU PHE ASN LYS GLU SEQRES 13 A 432 THR PHE ALA ILE LYS LEU LYS GLU ILE VAL GLU TYR HIS SEQRES 14 A 432 ASN PHE GLN LEU VAL HIS TYR TYR LYS GLU ALA ALA VAL SEQRES 15 A 432 ASP TYR GLN LYS VAL LEU ASP ASP VAL LEU ALA ILE ALA SEQRES 16 A 432 ASP ILE LEU THR ALA MET VAL VAL ASP VAL SER GLU LEU SEQRES 17 A 432 LEU ASP ASN ALA ARG LYS GLN GLY GLU LEU ILE MET PHE SEQRES 18 A 432 GLU GLY ALA GLN GLY THR LEU LEU ASP ILE ASP HIS GLY SEQRES 19 A 432 THR TYR PRO TYR VAL THR SER SER ASN THR THR ALA GLY SEQRES 20 A 432 GLY VAL ALA THR GLY SER GLY LEU GLY PRO ARG TYR VAL SEQRES 21 A 432 ASP TYR VAL LEU GLY ILE VAL LYS ALA TYR SER THR ARG SEQRES 22 A 432 VAL GLY ALA GLY PRO PHE PRO THR GLU LEU ASN ASP GLU SEQRES 23 A 432 THR GLY GLU PHE LEU ARG LYS GLN GLY ASN GLU TYR GLY SEQRES 24 A 432 ALA THR THR GLY ARG SER ARG ARG THR GLY TRP LEU ASP SEQRES 25 A 432 ILE VAL ALA VAL ARG ARG ALA VAL GLN ILE ASN SER LEU SEQRES 26 A 432 SER GLY PHE CYS MET THR LYS LEU ASP VAL LEU ASP GLY SEQRES 27 A 432 LEU LYS GLU VAL LYS LEU CYS VAL GLY TYR ARG MET PRO SEQRES 28 A 432 ASP GLY ARG GLU VAL ASP THR THR PRO LEU ALA ALA GLU SEQRES 29 A 432 GLY TRP GLU GLY ILE GLU PRO ILE TYR GLU THR MET PRO SEQRES 30 A 432 GLY TRP SER GLU THR THR PHE GLY VAL LYS GLU HIS SER SEQRES 31 A 432 LYS LEU PRO GLN ALA ALA LEU ASN TYR ILE GLN ARG VAL SEQRES 32 A 432 GLU GLU LEU THR GLY VAL PRO ILE ASP ILE ILE SER THR SEQRES 33 A 432 GLY PRO ASP ARG ASP GLU THR MET ILE LEU ARG ASP PRO SEQRES 34 A 432 PHE ASP ALA HET PG6 A 433 9 HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE FORMUL 2 PG6 C12 H26 O6 FORMUL 3 HOH *651(H2 O) HELIX 1 1 GLY A 16 GLU A 26 1 11 HELIX 2 2 ALA A 76 ARG A 90 1 15 HELIX 3 3 PRO A 93 ARG A 97 1 5 HELIX 4 4 LEU A 108 ALA A 121 1 14 HELIX 5 5 GLY A 133 ALA A 143 1 11 HELIX 6 6 ARG A 148 PHE A 153 5 6 HELIX 7 7 ASN A 154 TYR A 176 1 23 HELIX 8 8 ASP A 183 ALA A 200 1 18 HELIX 9 9 ASP A 204 GLN A 215 1 12 HELIX 10 10 GLY A 226 ASP A 230 5 5 HELIX 11 11 THR A 245 GLY A 247 5 3 HELIX 12 12 GLY A 248 GLY A 254 1 7 HELIX 13 13 GLY A 256 VAL A 260 5 5 HELIX 14 14 ASP A 285 GLY A 295 1 11 HELIX 15 15 ILE A 313 SER A 324 1 12 HELIX 16 16 LYS A 332 ASP A 337 5 6 HELIX 17 17 GLU A 388 LEU A 392 5 5 HELIX 18 18 PRO A 393 GLY A 408 1 16 SHEET 1 A 9 LEU A 98 LEU A 100 0 SHEET 2 A 9 ILE A 66 ILE A 69 1 N SER A 67 O LEU A 99 SHEET 3 A 9 TYR A 30 ARG A 33 1 N VAL A 31 O ILE A 68 SHEET 4 A 9 ILE A 219 GLU A 222 1 O GLU A 222 N VAL A 32 SHEET 5 A 9 VAL A 5 GLY A 9 1 N VAL A 7 O PHE A 221 SHEET 6 A 9 TYR A 262 LYS A 268 1 O LEU A 264 N VAL A 6 SHEET 7 A 9 GLY A 327 THR A 331 1 O GLY A 327 N GLY A 265 SHEET 8 A 9 ILE A 411 SER A 415 1 O SER A 415 N MET A 330 SHEET 9 A 9 THR A 423 ILE A 425 -1 O MET A 424 N ILE A 414 SHEET 1 B 2 HIS A 42 ILE A 46 0 SHEET 2 B 2 GLU A 49 LEU A 53 -1 O THR A 51 N LEU A 44 SHEET 1 C 4 TYR A 270 ARG A 273 0 SHEET 2 C 4 ARG A 307 ASP A 312 -1 O ARG A 307 N ARG A 273 SHEET 3 C 4 GLU A 341 ARG A 349 1 O CYS A 345 N LEU A 311 SHEET 4 C 4 GLU A 355 VAL A 356 -1 O VAL A 356 N TYR A 348 SHEET 1 D 4 TYR A 270 ARG A 273 0 SHEET 2 D 4 ARG A 307 ASP A 312 -1 O ARG A 307 N ARG A 273 SHEET 3 D 4 GLU A 341 ARG A 349 1 O CYS A 345 N LEU A 311 SHEET 4 D 4 GLU A 370 PRO A 377 -1 O GLU A 370 N ARG A 349 CISPEP 1 TYR A 236 PRO A 237 0 9.74 SITE 1 AC1 2 TYR A 176 TYR A 177 CRYST1 68.903 68.903 199.166 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005021 0.00000 MASTER 391 0 1 18 19 0 1 6 0 0 0 34 END