HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 07-MAY-09 3HDT TITLE CRYSTAL STRUCTURE OF PUTATIVE KINASE FROM CLOSTRIDIUM SYMBIOSUM ATCC TITLE 2 14940 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SYMBIOSUM ATCC 14940; SOURCE 3 ORGANISM_TAXID: 411472; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS CLOSTRIDIUM SYMBIOSUM ATCC 14940, PUTATIVE KINASE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,L.FREEMAN,R.JEDRZEJCZAK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 01-NOV-17 3HDT 1 REMARK REVDAT 2 13-JUL-11 3HDT 1 VERSN REVDAT 1 26-MAY-09 3HDT 0 JRNL AUTH C.CHANG,L.FREEMAN,R.JEDRZEJCZAK,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE KINASE FROM CLOSTRIDIUM JRNL TITL 2 SYMBIOSUM ATCC 14940 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 840 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.92000 REMARK 3 B22 (A**2) : -3.92000 REMARK 3 B33 (A**2) : 7.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.859 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.613 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2767 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3712 ; 1.528 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 6.059 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;33.249 ;23.582 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;18.346 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.663 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2050 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1673 ; 0.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2672 ; 1.023 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1094 ; 1.992 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1040 ; 3.281 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9834 58.2636 6.5454 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.0457 REMARK 3 T33: 0.0348 T12: -0.0110 REMARK 3 T13: -0.0058 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.2412 L22: 4.6306 REMARK 3 L33: 2.9688 L12: -1.2679 REMARK 3 L13: -0.7378 L23: 1.2594 REMARK 3 S TENSOR REMARK 3 S11: 0.0743 S12: 0.2603 S13: 0.1867 REMARK 3 S21: -0.6247 S22: 0.0089 S23: -0.2001 REMARK 3 S31: -0.2109 S32: -0.2054 S33: -0.0832 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 219 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0738 36.1963 22.1032 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.0890 REMARK 3 T33: 0.0892 T12: 0.0567 REMARK 3 T13: -0.0621 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.0686 L22: 4.0733 REMARK 3 L33: 2.9174 L12: 0.2542 REMARK 3 L13: 0.8482 L23: 0.9060 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.2844 S13: -0.1576 REMARK 3 S21: 0.8283 S22: 0.2796 S23: -0.2750 REMARK 3 S31: 0.4080 S32: -0.2599 S33: -0.3039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13096 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M ACETIC ACID PH 4.5, 20% 1,4 REMARK 280 -BUTANEDIOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.68750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.72150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.72150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.34375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.72150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.72150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.03125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.72150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.72150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.34375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.72150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.72150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.03125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.68750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER AS IS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 5 REMARK 465 PHE A 6 REMARK 465 MSE A 7 REMARK 465 GLY A 8 REMARK 465 SER A 52 REMARK 465 ALA A 53 REMARK 465 VAL A 54 REMARK 465 GLY A 55 REMARK 465 GLU A 56 REMARK 465 GLN A 57 REMARK 465 PHE A 58 REMARK 465 PHE A 59 REMARK 465 ARG A 60 REMARK 465 LEU A 61 REMARK 465 ALA A 62 REMARK 465 ASP A 63 REMARK 465 GLU A 64 REMARK 465 LYS A 65 REMARK 465 ALA A 66 REMARK 465 GLY A 67 REMARK 465 ASN A 68 REMARK 465 ASN A 69 REMARK 465 LEU A 70 REMARK 465 LEU A 71 REMARK 465 TYR A 72 REMARK 465 ARG A 73 REMARK 465 LEU A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 ARG A 78 REMARK 465 LYS A 79 REMARK 465 ILE A 80 REMARK 465 ASP A 81 REMARK 465 LEU A 82 REMARK 465 HIS A 83 REMARK 465 SER A 84 REMARK 465 LYS A 85 REMARK 465 PRO A 86 REMARK 465 SER A 87 REMARK 465 PRO A 88 REMARK 465 ASN A 89 REMARK 465 ASP A 90 REMARK 465 LYS A 91 REMARK 465 LEU A 92 REMARK 465 THR A 93 REMARK 465 ASP A 220 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 GLN B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 ARG B 5 REMARK 465 PHE B 6 REMARK 465 MSE B 7 REMARK 465 GLY B 8 REMARK 465 SER B 52 REMARK 465 ALA B 53 REMARK 465 VAL B 54 REMARK 465 GLY B 55 REMARK 465 GLU B 56 REMARK 465 GLN B 57 REMARK 465 PHE B 58 REMARK 465 PHE B 59 REMARK 465 ARG B 60 REMARK 465 LEU B 61 REMARK 465 ALA B 62 REMARK 465 ASP B 63 REMARK 465 GLU B 64 REMARK 465 LYS B 65 REMARK 465 ALA B 66 REMARK 465 GLY B 67 REMARK 465 ASN B 68 REMARK 465 ASN B 69 REMARK 465 LEU B 70 REMARK 465 LEU B 71 REMARK 465 TYR B 72 REMARK 465 ARG B 73 REMARK 465 LEU B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 GLY B 77 REMARK 465 ARG B 78 REMARK 465 LYS B 79 REMARK 465 ILE B 80 REMARK 465 ASP B 81 REMARK 465 LEU B 82 REMARK 465 HIS B 83 REMARK 465 SER B 84 REMARK 465 LYS B 85 REMARK 465 PRO B 86 REMARK 465 SER B 87 REMARK 465 PRO B 88 REMARK 465 ASN B 89 REMARK 465 ASP B 90 REMARK 465 LYS B 91 REMARK 465 LEU B 92 REMARK 465 THR B 93 REMARK 465 ASP B 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 9 CG OD1 ND2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 ILE A 37 CG1 CG2 CD1 REMARK 470 LEU A 45 CG CD1 CD2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 SER A 49 OG REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 SER A 94 OG REMARK 470 LEU A 98 CG CD1 CD2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ASN B 9 CG OD1 ND2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 LEU B 45 CG CD1 CD2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LEU B 47 CG CD1 CD2 REMARK 470 SER B 49 OG REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 SER B 94 OG REMARK 470 PRO B 95 CG CD REMARK 470 SER B 112 OG REMARK 470 LEU B 126 CG CD1 CD2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 GLU B 160 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 PRO B 95 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 143.16 -38.06 REMARK 500 ARG A 134 55.26 -115.85 REMARK 500 GLU B 33 -70.70 -59.46 REMARK 500 GLU B 34 -26.82 -39.58 REMARK 500 SER B 49 -73.33 -47.00 REMARK 500 GLU B 50 -84.40 -4.30 REMARK 500 ASP B 129 102.07 -52.57 REMARK 500 THR B 181 -16.48 -149.68 REMARK 500 HIS B 186 35.66 -95.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC21299 RELATED DB: TARGETDB DBREF 3HDT A -2 220 PDB 3HDT 3HDT 1 223 DBREF 3HDT B -2 220 PDB 3HDT 3HDT 1 223 SEQRES 1 A 223 SER ASN ALA MSE GLN GLY GLY ARG PHE MSE GLY ASN LYS SEQRES 2 A 223 ASN LEU ILE ILE THR ILE GLU ARG GLU TYR GLY SER GLY SEQRES 3 A 223 GLY ARG ILE VAL GLY LYS LYS LEU ALA GLU GLU LEU GLY SEQRES 4 A 223 ILE HIS PHE TYR ASP ASP ASP ILE LEU LYS LEU ALA SER SEQRES 5 A 223 GLU LYS SER ALA VAL GLY GLU GLN PHE PHE ARG LEU ALA SEQRES 6 A 223 ASP GLU LYS ALA GLY ASN ASN LEU LEU TYR ARG LEU GLY SEQRES 7 A 223 GLY GLY ARG LYS ILE ASP LEU HIS SER LYS PRO SER PRO SEQRES 8 A 223 ASN ASP LYS LEU THR SER PRO GLU ASN LEU PHE LYS PHE SEQRES 9 A 223 GLN SER GLU VAL MSE ARG GLU LEU ALA GLU SER GLU PRO SEQRES 10 A 223 CYS ILE PHE VAL GLY ARG ALA ALA GLY TYR VAL LEU ASP SEQRES 11 A 223 GLN ASP GLU ASP ILE GLU ARG LEU ILE ARG ILE PHE VAL SEQRES 12 A 223 TYR THR ASP LYS VAL LYS LYS VAL GLN ARG VAL MSE GLU SEQRES 13 A 223 VAL ASP CYS ILE ASP GLU GLU ARG ALA LYS ARG ARG ILE SEQRES 14 A 223 LYS LYS ILE GLU LYS GLU ARG LYS GLU TYR TYR LYS TYR SEQRES 15 A 223 PHE THR GLY SER GLU TRP HIS SER MSE LYS ASN TYR ASP SEQRES 16 A 223 LEU PRO ILE ASN THR THR LYS LEU THR LEU GLU GLU THR SEQRES 17 A 223 ALA GLU LEU ILE LYS ALA TYR ILE ARG LEU LYS GLY PHE SEQRES 18 A 223 MSE ASP SEQRES 1 B 223 SER ASN ALA MSE GLN GLY GLY ARG PHE MSE GLY ASN LYS SEQRES 2 B 223 ASN LEU ILE ILE THR ILE GLU ARG GLU TYR GLY SER GLY SEQRES 3 B 223 GLY ARG ILE VAL GLY LYS LYS LEU ALA GLU GLU LEU GLY SEQRES 4 B 223 ILE HIS PHE TYR ASP ASP ASP ILE LEU LYS LEU ALA SER SEQRES 5 B 223 GLU LYS SER ALA VAL GLY GLU GLN PHE PHE ARG LEU ALA SEQRES 6 B 223 ASP GLU LYS ALA GLY ASN ASN LEU LEU TYR ARG LEU GLY SEQRES 7 B 223 GLY GLY ARG LYS ILE ASP LEU HIS SER LYS PRO SER PRO SEQRES 8 B 223 ASN ASP LYS LEU THR SER PRO GLU ASN LEU PHE LYS PHE SEQRES 9 B 223 GLN SER GLU VAL MSE ARG GLU LEU ALA GLU SER GLU PRO SEQRES 10 B 223 CYS ILE PHE VAL GLY ARG ALA ALA GLY TYR VAL LEU ASP SEQRES 11 B 223 GLN ASP GLU ASP ILE GLU ARG LEU ILE ARG ILE PHE VAL SEQRES 12 B 223 TYR THR ASP LYS VAL LYS LYS VAL GLN ARG VAL MSE GLU SEQRES 13 B 223 VAL ASP CYS ILE ASP GLU GLU ARG ALA LYS ARG ARG ILE SEQRES 14 B 223 LYS LYS ILE GLU LYS GLU ARG LYS GLU TYR TYR LYS TYR SEQRES 15 B 223 PHE THR GLY SER GLU TRP HIS SER MSE LYS ASN TYR ASP SEQRES 16 B 223 LEU PRO ILE ASN THR THR LYS LEU THR LEU GLU GLU THR SEQRES 17 B 223 ALA GLU LEU ILE LYS ALA TYR ILE ARG LEU LYS GLY PHE SEQRES 18 B 223 MSE ASP MODRES 3HDT MSE A 106 MET SELENOMETHIONINE MODRES 3HDT MSE A 152 MET SELENOMETHIONINE MODRES 3HDT MSE A 188 MET SELENOMETHIONINE MODRES 3HDT MSE A 219 MET SELENOMETHIONINE MODRES 3HDT MSE B 106 MET SELENOMETHIONINE MODRES 3HDT MSE B 152 MET SELENOMETHIONINE MODRES 3HDT MSE B 188 MET SELENOMETHIONINE MODRES 3HDT MSE B 219 MET SELENOMETHIONINE HET MSE A 106 8 HET MSE A 152 8 HET MSE A 188 8 HET MSE A 219 8 HET MSE B 106 8 HET MSE B 152 8 HET MSE B 188 8 HET MSE B 219 8 HET PO4 A 301 5 HET CL A 302 1 HET PO4 B 301 5 HET CL B 302 1 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *31(H2 O) HELIX 1 1 GLY A 23 GLY A 36 1 14 HELIX 2 2 ASP A 41 LYS A 51 1 11 HELIX 3 3 SER A 94 GLU A 113 1 20 HELIX 4 4 ALA A 121 ASP A 129 1 9 HELIX 5 5 ASP A 143 CYS A 156 1 14 HELIX 6 6 ASP A 158 GLY A 182 1 25 HELIX 7 7 SER A 187 TYR A 191 5 5 HELIX 8 8 THR A 201 LYS A 216 1 16 HELIX 9 9 GLY B 23 GLY B 36 1 14 HELIX 10 10 ASP B 41 LYS B 51 1 11 HELIX 11 11 GLU B 96 GLU B 113 1 18 HELIX 12 12 ALA B 121 ASP B 129 1 9 HELIX 13 13 ASP B 143 CYS B 156 1 14 HELIX 14 14 ASP B 158 GLY B 182 1 25 HELIX 15 15 SER B 187 TYR B 191 5 5 HELIX 16 16 THR B 198 LEU B 200 5 3 HELIX 17 17 THR B 201 LYS B 216 1 16 SHEET 1 A 5 HIS A 38 TYR A 40 0 SHEET 2 A 5 CYS A 115 VAL A 118 1 O ILE A 116 N TYR A 40 SHEET 3 A 5 LEU A 12 ARG A 18 1 N ILE A 16 O PHE A 117 SHEET 4 A 5 ARG A 134 TYR A 141 1 O ILE A 138 N THR A 15 SHEET 5 A 5 LEU A 193 ASN A 196 1 O LEU A 193 N ARG A 137 SHEET 1 B 5 HIS B 38 TYR B 40 0 SHEET 2 B 5 CYS B 115 VAL B 118 1 O VAL B 118 N TYR B 40 SHEET 3 B 5 ILE B 13 ARG B 18 1 N ILE B 16 O PHE B 117 SHEET 4 B 5 LEU B 135 TYR B 141 1 O VAL B 140 N GLU B 17 SHEET 5 B 5 LEU B 193 ASN B 196 1 O ILE B 195 N PHE B 139 LINK C VAL A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N ARG A 107 1555 1555 1.33 LINK C VAL A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N GLU A 153 1555 1555 1.32 LINK C SER A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N LYS A 189 1555 1555 1.33 LINK C PHE A 218 N MSE A 219 1555 1555 1.34 LINK C VAL B 105 N MSE B 106 1555 1555 1.33 LINK C MSE B 106 N ARG B 107 1555 1555 1.34 LINK C VAL B 151 N MSE B 152 1555 1555 1.34 LINK C MSE B 152 N GLU B 153 1555 1555 1.33 LINK C SER B 187 N MSE B 188 1555 1555 1.34 LINK C MSE B 188 N LYS B 189 1555 1555 1.32 LINK C PHE B 218 N MSE B 219 1555 1555 1.33 SITE 1 AC1 11 ARG A 18 GLU A 19 TYR A 20 GLY A 21 SITE 2 AC1 11 SER A 22 GLY A 23 GLY A 24 ARG A 25 SITE 3 AC1 11 ARG A 173 HOH A 233 HOH A 234 SITE 1 AC2 4 GLU A 17 ARG A 18 TRP A 185 HOH A 225 SITE 1 AC3 8 ARG B 18 GLU B 19 GLY B 21 SER B 22 SITE 2 AC3 8 GLY B 23 GLY B 24 ARG B 25 HOH B 230 SITE 1 AC4 3 GLU B 17 ARG B 18 TRP B 185 CRYST1 95.443 95.443 109.375 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009143 0.00000 MASTER 507 0 12 17 10 0 7 6 0 0 0 36 END