HEADER OXIDOREDUCTASE 13-APR-99 3HDH TITLE PIG HEART SHORT CHAIN L-3-HYDROXYACYL COA DEHYDROGENASE TITLE 2 REVISITED: SEQUENCE ANALYSIS AND CRYSTAL STRUCTURE TITLE 3 DETERMINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (L-3-HYDROXYACYL COA DEHYDROGENASE); COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SCHAD; COMPND 5 EC: 1.1.1.35 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 ORGANELLE: MITOCHONDRIAL KEYWDS OXIDOREDUCTASE, BETA OXIDATION, SCHAD, CATALYTIC ACTIVITY: KEYWDS 2 L-3-HYDROXYACYL-COA + NAD(+) = 3-OXOACYL-COA + NADH EXPDTA X-RAY DIFFRACTION AUTHOR J.J.BARYCKI,L.K.O'BRIEN,J.J.BIRKTOFT,A.W.STRAUSS, AUTHOR 2 L.J.BANASZAK REVDAT 4 24-FEB-09 3HDH 1 VERSN REVDAT 3 01-APR-03 3HDH 1 JRNL REVDAT 2 26-SEP-01 3HDH 3 ATOM REVDAT 1 08-OCT-99 3HDH 0 JRNL AUTH J.J.BARYCKI,L.K.O'BRIEN,J.J.BIRKTOFT,A.W.STRAUSS, JRNL AUTH 2 L.J.BANASZAK JRNL TITL PIG HEART SHORT CHAIN L-3-HYDROXYACYL-COA JRNL TITL 2 DEHYDROGENASE REVISITED: SEQUENCE ANALYSIS AND JRNL TITL 3 CRYSTAL STRUCTURE DETERMINATION. JRNL REF PROTEIN SCI. V. 8 2010 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10548046 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.J.BIRKTOFT,H.M.HOLDEN,R.HAMLIN,N.H.XUONG, REMARK 1 AUTH 2 L.J.BANASZAK REMARK 1 TITL STRUCTURE OF L-3-HYDROXYACYL-COENZYME A REMARK 1 TITL 2 DEHYDROGENASE: PRELIMINARY CHAIN TRACING AT 2.8-A REMARK 1 TITL 3 RESOLUTION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 84 8262 1987 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 24618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2850 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 160 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.44 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.59 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.070 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.140 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NAD.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NAD.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED POOR REMARK 3 ELECTRON DENSITY OBSERVED FOR THIRD SUBUNIT (SUBUNIT C). THREE REMARK 3 BREAKS WERE OBSERVED IN THE DENSITY AND SEVERAL RESIDUES HAVE REMARK 3 BEEN ASSIGNED OCCUPANCIES OF 0.5 REMARK 4 REMARK 4 3HDH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB ON 27-APR-99. REMARK 100 THE RCSB ID CODE IS RCSB000846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-85 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3HAD REMARK 200 REMARK 200 REMARK: USED DIMER AS A PROBE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS, PH 8.0, + 1MM DTT + 11- REMARK 280 14% PEG 6K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 113.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 113.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.35000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 113.60000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.35000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 113.60000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 UNUSUAL SITUATION OF 3 SUBUNITS CONTAINED WITHIN THE REMARK 300 ASYMMETRIC UNIT FOR A DIMERIC ENZYME. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.35000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 ALA B 10 REMARK 465 LYS B 11 REMARK 465 SER C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 THR C 5 REMARK 465 ALA C 6 REMARK 465 ALA C 7 REMARK 465 ALA C 8 REMARK 465 SER C 9 REMARK 465 ALA C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 224 REMARK 465 GLY C 225 REMARK 465 ASP C 226 REMARK 465 ALA C 227 REMARK 465 SER C 228 REMARK 465 GLY C 241 REMARK 465 TYR C 242 REMARK 465 PRO C 243 REMARK 465 MET C 244 REMARK 465 MET C 268 REMARK 465 ASP C 269 REMARK 465 SER C 270 REMARK 465 GLN C 271 REMARK 465 ASN C 272 REMARK 465 PRO C 273 REMARK 465 LEU C 274 REMARK 465 PHE C 275 REMARK 465 GLN C 276 REMARK 465 PRO C 277 REMARK 465 GLU C 296 REMARK 465 GLY C 297 REMARK 465 PHE C 298 REMARK 465 TYR C 299 REMARK 465 LYS C 300 REMARK 465 TYR C 301 REMARK 465 LYS C 302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 302 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP C 231 N ALA C 235 2.15 REMARK 500 O ALA C 235 N GLY C 239 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG GLU C 217 CG GLU C 217 3555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 25 -72.23 -34.40 REMARK 500 ALA A 36 -25.21 -39.02 REMARK 500 ASN A 73 78.70 175.08 REMARK 500 THR A 84 -72.26 -46.90 REMARK 500 SER A 87 0.62 -64.92 REMARK 500 ALA A 95 -32.57 -37.15 REMARK 500 ALA A 107 68.09 -159.36 REMARK 500 VAL A 109 131.80 -28.18 REMARK 500 ALA A 126 155.51 -48.65 REMARK 500 GLN A 151 -35.97 -34.55 REMARK 500 PHE A 205 -115.62 60.70 REMARK 500 VAL A 207 -70.93 -50.85 REMARK 500 MET A 268 16.21 -61.44 REMARK 500 ASP A 269 77.73 165.44 REMARK 500 LYS A 283 -77.46 -72.58 REMARK 500 LEU A 284 -38.10 -37.55 REMARK 500 ALA A 286 -0.92 -57.92 REMARK 500 VAL B 15 107.73 -44.84 REMARK 500 GLN B 32 -80.22 -47.46 REMARK 500 VAL B 33 -34.12 -39.38 REMARK 500 ALA B 34 -73.90 -64.57 REMARK 500 ALA B 36 -16.85 -46.02 REMARK 500 ASP B 45 -157.45 -157.82 REMARK 500 ALA B 66 -73.92 -135.47 REMARK 500 GLU B 72 -94.32 -47.35 REMARK 500 ALA B 76 51.13 -64.06 REMARK 500 SER B 87 56.91 -105.92 REMARK 500 ILE B 88 85.60 -150.16 REMARK 500 SER B 89 -168.55 -60.69 REMARK 500 LEU B 103 119.54 -166.34 REMARK 500 ALA B 107 62.67 -151.30 REMARK 500 VAL B 109 140.80 -36.65 REMARK 500 LYS B 124 -76.34 -74.49 REMARK 500 GLU B 128 -79.89 -72.80 REMARK 500 HIS B 129 -38.01 -38.00 REMARK 500 THR B 130 133.05 -36.22 REMARK 500 LYS B 200 -177.27 -61.15 REMARK 500 PHE B 205 -117.48 50.66 REMARK 500 ILE B 206 -78.05 -104.02 REMARK 500 VAL B 207 -80.59 -39.23 REMARK 500 PHE B 260 -80.57 -38.15 REMARK 500 MET B 268 -6.64 -59.53 REMARK 500 ASP B 269 78.21 -176.25 REMARK 500 GLN B 276 109.65 -57.94 REMARK 500 LYS B 293 11.86 -66.28 REMARK 500 THR B 294 -8.99 -142.78 REMARK 500 LEU C 25 -72.94 -40.66 REMARK 500 GLN C 46 -70.98 -66.22 REMARK 500 THR C 47 -167.65 -77.26 REMARK 500 ASN C 73 70.01 -167.91 REMARK 500 GLU C 82 -77.88 -79.92 REMARK 500 LYS C 83 -57.77 -28.50 REMARK 500 GLU C 110 66.62 -62.79 REMARK 500 ALA C 127 175.74 -59.62 REMARK 500 THR C 136 160.09 -46.55 REMARK 500 ALA C 155 -139.59 -105.98 REMARK 500 PHE C 205 -117.60 57.59 REMARK 500 VAL C 207 -81.38 -58.45 REMARK 500 VAL C 219 -73.31 -46.39 REMARK 500 TYR C 222 2.63 -62.55 REMARK 500 MET C 236 -72.74 -56.36 REMARK 500 ALA C 286 30.12 -83.95 REMARK 500 GLU C 287 28.04 -161.93 REMARK 500 ASN C 288 13.56 55.47 REMARK 500 LYS C 289 48.96 -88.99 REMARK 500 PHE C 290 12.88 -59.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 222 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 350 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 750 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD C 1150 DBREF 3HDH A 1 302 UNP P00348 HCDH_PIG 1 302 DBREF 3HDH B 1 302 UNP P00348 HCDH_PIG 1 302 DBREF 3HDH C 1 302 UNP P00348 HCDH_PIG 1 302 SEQRES 1 A 302 SER SER SER SER THR ALA ALA ALA SER ALA LYS LYS ILE SEQRES 2 A 302 LEU VAL LYS HIS VAL THR VAL ILE GLY GLY GLY LEU MET SEQRES 3 A 302 GLY ALA GLY ILE ALA GLN VAL ALA ALA ALA THR GLY HIS SEQRES 4 A 302 THR VAL VAL LEU VAL ASP GLN THR GLU ASP ILE LEU ALA SEQRES 5 A 302 LYS SER LYS LYS GLY ILE GLU GLU SER LEU ARG LYS VAL SEQRES 6 A 302 ALA LYS LYS LYS PHE ALA GLU ASN PRO LYS ALA GLY ASP SEQRES 7 A 302 GLU PHE VAL GLU LYS THR LEU SER SER ILE SER THR SER SEQRES 8 A 302 THR ASP ALA ALA SER VAL VAL HIS SER THR ASP LEU VAL SEQRES 9 A 302 VAL GLU ALA ILE VAL GLU ASN LEU LYS VAL LYS SER GLU SEQRES 10 A 302 LEU PHE LYS ARG LEU ASP LYS PHE ALA ALA GLU HIS THR SEQRES 11 A 302 ILE PHE ALA SER ASN THR SER SER LEU GLN ILE THR SER SEQRES 12 A 302 LEU ALA ASN ALA THR THR ARG GLN ASP ARG PHE ALA GLY SEQRES 13 A 302 LEU HIS PHE PHE ASN PRO VAL PRO LEU MET LYS LEU VAL SEQRES 14 A 302 GLU VAL VAL LYS THR PRO MET THR SER GLN LYS THR LEU SEQRES 15 A 302 GLU SER LEU VAL ASP PHE SER LYS THR LEU GLY LYS HIS SEQRES 16 A 302 PRO VAL SER CYS LYS ASP THR PRO GLY PHE ILE VAL ASN SEQRES 17 A 302 ARG LEU LEU VAL PRO TYR LEU ILE GLU ALA VAL ARG LEU SEQRES 18 A 302 TYR GLU ARG GLY ASP ALA SER LYS GLU ASP ILE ASP THR SEQRES 19 A 302 ALA MET LYS LEU GLY ALA GLY TYR PRO MET GLY PRO PHE SEQRES 20 A 302 GLU LEU LEU ASP TYR VAL GLY LEU ASP THR THR LYS PHE SEQRES 21 A 302 ILE ILE ASP GLY TRP HIS GLU MET ASP SER GLN ASN PRO SEQRES 22 A 302 LEU PHE GLN PRO SER PRO ALA MET ASN LYS LEU VAL ALA SEQRES 23 A 302 GLU ASN LYS PHE GLY LYS LYS THR GLY GLU GLY PHE TYR SEQRES 24 A 302 LYS TYR LYS SEQRES 1 B 302 SER SER SER SER THR ALA ALA ALA SER ALA LYS LYS ILE SEQRES 2 B 302 LEU VAL LYS HIS VAL THR VAL ILE GLY GLY GLY LEU MET SEQRES 3 B 302 GLY ALA GLY ILE ALA GLN VAL ALA ALA ALA THR GLY HIS SEQRES 4 B 302 THR VAL VAL LEU VAL ASP GLN THR GLU ASP ILE LEU ALA SEQRES 5 B 302 LYS SER LYS LYS GLY ILE GLU GLU SER LEU ARG LYS VAL SEQRES 6 B 302 ALA LYS LYS LYS PHE ALA GLU ASN PRO LYS ALA GLY ASP SEQRES 7 B 302 GLU PHE VAL GLU LYS THR LEU SER SER ILE SER THR SER SEQRES 8 B 302 THR ASP ALA ALA SER VAL VAL HIS SER THR ASP LEU VAL SEQRES 9 B 302 VAL GLU ALA ILE VAL GLU ASN LEU LYS VAL LYS SER GLU SEQRES 10 B 302 LEU PHE LYS ARG LEU ASP LYS PHE ALA ALA GLU HIS THR SEQRES 11 B 302 ILE PHE ALA SER ASN THR SER SER LEU GLN ILE THR SER SEQRES 12 B 302 LEU ALA ASN ALA THR THR ARG GLN ASP ARG PHE ALA GLY SEQRES 13 B 302 LEU HIS PHE PHE ASN PRO VAL PRO LEU MET LYS LEU VAL SEQRES 14 B 302 GLU VAL VAL LYS THR PRO MET THR SER GLN LYS THR LEU SEQRES 15 B 302 GLU SER LEU VAL ASP PHE SER LYS THR LEU GLY LYS HIS SEQRES 16 B 302 PRO VAL SER CYS LYS ASP THR PRO GLY PHE ILE VAL ASN SEQRES 17 B 302 ARG LEU LEU VAL PRO TYR LEU ILE GLU ALA VAL ARG LEU SEQRES 18 B 302 TYR GLU ARG GLY ASP ALA SER LYS GLU ASP ILE ASP THR SEQRES 19 B 302 ALA MET LYS LEU GLY ALA GLY TYR PRO MET GLY PRO PHE SEQRES 20 B 302 GLU LEU LEU ASP TYR VAL GLY LEU ASP THR THR LYS PHE SEQRES 21 B 302 ILE ILE ASP GLY TRP HIS GLU MET ASP SER GLN ASN PRO SEQRES 22 B 302 LEU PHE GLN PRO SER PRO ALA MET ASN LYS LEU VAL ALA SEQRES 23 B 302 GLU ASN LYS PHE GLY LYS LYS THR GLY GLU GLY PHE TYR SEQRES 24 B 302 LYS TYR LYS SEQRES 1 C 302 SER SER SER SER THR ALA ALA ALA SER ALA LYS LYS ILE SEQRES 2 C 302 LEU VAL LYS HIS VAL THR VAL ILE GLY GLY GLY LEU MET SEQRES 3 C 302 GLY ALA GLY ILE ALA GLN VAL ALA ALA ALA THR GLY HIS SEQRES 4 C 302 THR VAL VAL LEU VAL ASP GLN THR GLU ASP ILE LEU ALA SEQRES 5 C 302 LYS SER LYS LYS GLY ILE GLU GLU SER LEU ARG LYS VAL SEQRES 6 C 302 ALA LYS LYS LYS PHE ALA GLU ASN PRO LYS ALA GLY ASP SEQRES 7 C 302 GLU PHE VAL GLU LYS THR LEU SER SER ILE SER THR SER SEQRES 8 C 302 THR ASP ALA ALA SER VAL VAL HIS SER THR ASP LEU VAL SEQRES 9 C 302 VAL GLU ALA ILE VAL GLU ASN LEU LYS VAL LYS SER GLU SEQRES 10 C 302 LEU PHE LYS ARG LEU ASP LYS PHE ALA ALA GLU HIS THR SEQRES 11 C 302 ILE PHE ALA SER ASN THR SER SER LEU GLN ILE THR SER SEQRES 12 C 302 LEU ALA ASN ALA THR THR ARG GLN ASP ARG PHE ALA GLY SEQRES 13 C 302 LEU HIS PHE PHE ASN PRO VAL PRO LEU MET LYS LEU VAL SEQRES 14 C 302 GLU VAL VAL LYS THR PRO MET THR SER GLN LYS THR LEU SEQRES 15 C 302 GLU SER LEU VAL ASP PHE SER LYS THR LEU GLY LYS HIS SEQRES 16 C 302 PRO VAL SER CYS LYS ASP THR PRO GLY PHE ILE VAL ASN SEQRES 17 C 302 ARG LEU LEU VAL PRO TYR LEU ILE GLU ALA VAL ARG LEU SEQRES 18 C 302 TYR GLU ARG GLY ASP ALA SER LYS GLU ASP ILE ASP THR SEQRES 19 C 302 ALA MET LYS LEU GLY ALA GLY TYR PRO MET GLY PRO PHE SEQRES 20 C 302 GLU LEU LEU ASP TYR VAL GLY LEU ASP THR THR LYS PHE SEQRES 21 C 302 ILE ILE ASP GLY TRP HIS GLU MET ASP SER GLN ASN PRO SEQRES 22 C 302 LEU PHE GLN PRO SER PRO ALA MET ASN LYS LEU VAL ALA SEQRES 23 C 302 GLU ASN LYS PHE GLY LYS LYS THR GLY GLU GLY PHE TYR SEQRES 24 C 302 LYS TYR LYS HET NAD A 350 44 HET NAD B 750 44 HET NAD C1150 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 4 NAD 3(C21 H27 N7 O14 P2) FORMUL 7 HOH *23(H2 O) HELIX 1 1 LEU A 25 ALA A 36 1 12 HELIX 2 2 GLU A 48 LYS A 69 1 22 HELIX 3 3 PRO A 74 SER A 87 1 14 HELIX 4 4 ALA A 94 SER A 96 5 3 HELIX 5 5 LEU A 112 PHE A 125 1 14 HELIX 6 6 ILE A 141 ALA A 147 1 7 HELIX 7 7 GLN A 151 ARG A 153 5 3 HELIX 8 8 GLN A 179 THR A 191 1 13 HELIX 9 9 VAL A 207 GLU A 223 1 17 HELIX 10 10 LYS A 229 ALA A 240 1 12 HELIX 11 11 PRO A 246 VAL A 253 1 8 HELIX 12 12 LEU A 255 ASP A 269 1 15 HELIX 13 13 PRO A 273 PHE A 275 5 3 HELIX 14 14 PRO A 279 ALA A 286 1 8 HELIX 15 15 LEU B 25 THR B 37 1 13 HELIX 16 16 GLU B 48 LYS B 64 1 17 HELIX 17 17 PHE B 80 SER B 86 1 7 HELIX 18 18 LEU B 112 PHE B 125 1 14 HELIX 19 19 ILE B 141 ALA B 147 1 7 HELIX 20 20 GLN B 151 ARG B 153 5 3 HELIX 21 21 GLN B 179 LEU B 192 1 14 HELIX 22 22 VAL B 207 ARG B 224 1 18 HELIX 23 23 LYS B 229 GLY B 239 1 11 HELIX 24 24 PRO B 246 VAL B 253 1 8 HELIX 25 25 LEU B 255 ASP B 269 1 15 HELIX 26 26 PRO B 279 GLU B 287 1 9 HELIX 27 27 LYS B 292 THR B 294 5 3 HELIX 28 28 LEU C 25 ALA C 36 1 12 HELIX 29 29 ILE C 50 LYS C 69 1 20 HELIX 30 30 PRO C 74 SER C 87 1 14 HELIX 31 31 ALA C 94 SER C 96 5 3 HELIX 32 32 LEU C 112 PHE C 125 1 14 HELIX 33 33 ILE C 141 ALA C 147 1 7 HELIX 34 34 GLN C 151 ARG C 153 5 3 HELIX 35 35 GLN C 179 THR C 191 1 13 HELIX 36 36 VAL C 207 TYR C 222 1 16 HELIX 37 37 ASP C 231 GLY C 239 1 9 HELIX 38 38 PRO C 246 VAL C 253 1 8 HELIX 39 39 PHE C 260 TRP C 265 1 6 SHEET 1 A 8 HIS A 195 LYS A 200 0 SHEET 2 A 8 LEU A 168 LYS A 173 1 N VAL A 169 O HIS A 195 SHEET 3 A 8 PHE A 154 PHE A 159 -1 N HIS A 158 O GLU A 170 SHEET 4 A 8 ILE A 131 SER A 134 1 N PHE A 132 O ALA A 155 SHEET 5 A 8 LEU A 103 GLU A 106 1 N VAL A 104 O ILE A 131 SHEET 6 A 8 HIS A 17 ILE A 21 1 N THR A 19 O LEU A 103 SHEET 7 A 8 THR A 40 VAL A 44 1 N THR A 40 O VAL A 18 SHEET 8 A 8 ILE A 88 SER A 91 1 N SER A 89 O VAL A 41 SHEET 1 B 6 THR B 19 ILE B 21 0 SHEET 2 B 6 LEU B 103 GLU B 106 1 N VAL B 105 O THR B 19 SHEET 3 B 6 ILE B 131 SER B 134 1 N ILE B 131 O VAL B 104 SHEET 4 B 6 PHE B 154 PHE B 159 1 N ALA B 155 O PHE B 132 SHEET 5 B 6 LEU B 168 VAL B 172 -1 N VAL B 172 O GLY B 156 SHEET 6 B 6 HIS B 195 CYS B 199 1 N HIS B 195 O VAL B 169 SHEET 1 C 2 VAL B 41 VAL B 44 0 SHEET 2 C 2 ILE B 88 SER B 91 1 N SER B 89 O VAL B 41 SHEET 1 D 5 ILE C 131 SER C 134 0 SHEET 2 D 5 LEU C 103 GLU C 106 1 N VAL C 104 O ILE C 131 SHEET 3 D 5 HIS C 17 ILE C 21 1 N THR C 19 O LEU C 103 SHEET 4 D 5 THR C 40 VAL C 44 1 N THR C 40 O VAL C 18 SHEET 5 D 5 ILE C 88 SER C 91 1 N SER C 89 O VAL C 41 SHEET 1 E 3 ALA C 155 HIS C 158 0 SHEET 2 E 3 LEU C 168 LYS C 173 -1 N VAL C 172 O GLY C 156 SHEET 3 E 3 HIS C 195 LYS C 200 1 N HIS C 195 O VAL C 169 CISPEP 1 ASN A 161 PRO A 162 0 -0.61 CISPEP 2 ASN B 161 PRO B 162 0 0.88 CISPEP 3 ASN C 161 PRO C 162 0 -1.01 SITE 1 AC1 14 LEU A 25 MET A 26 ASP A 45 GLN A 46 SITE 2 AC1 14 ALA A 107 ILE A 108 VAL A 109 GLU A 110 SITE 3 AC1 14 VAL A 114 LYS A 115 ASN A 135 SER A 137 SITE 4 AC1 14 HIS A 158 PHE A 159 SITE 1 AC2 12 GLY B 24 LEU B 25 MET B 26 ASP B 45 SITE 2 AC2 12 GLN B 46 ALA B 107 ILE B 108 GLU B 110 SITE 3 AC2 12 LYS B 115 ASN B 135 SER B 137 PHE B 159 SITE 1 AC3 16 GLY C 22 LEU C 25 MET C 26 ASP C 45 SITE 2 AC3 16 GLN C 46 ALA C 107 ILE C 108 GLU C 110 SITE 3 AC3 16 LYS C 115 LEU C 118 ASN C 135 THR C 136 SITE 4 AC3 16 SER C 137 HIS C 158 PHE C 159 ASN C 161 CRYST1 227.200 82.100 124.700 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008019 0.00000 MASTER 473 0 3 39 24 0 11 6 0 0 0 72 END