HEADER ELECTRON TRANSPORT 20-APR-09 3H4N TITLE PPCD, A CYTOCHROME C7 FROM GEOBACTER SULFURREDUCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOCHROME C3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 35554; SOURCE 4 GENE: CYD-4, GSU1024; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JCB7123 KEYWDS CYTOCHROME C7, MULTIHEME CYTOCHROME, GEOBACTER SULFURREDUCENS, KEYWDS 2 ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR P.R.POKKULURI,M.SCHIFFER REVDAT 4 24-JUL-19 3H4N 1 REMARK REVDAT 3 25-OCT-17 3H4N 1 REMARK REVDAT 2 28-APR-10 3H4N 1 JRNL REVDAT 1 29-DEC-09 3H4N 0 JRNL AUTH P.R.POKKULURI,Y.Y.LONDER,X.YANG,N.E.DUKE,J.ERICKSON, JRNL AUTH 2 V.ORSHONSKY,G.JOHNSON,M.SCHIFFER JRNL TITL STRUCTURAL CHARACTERIZATION OF A FAMILY OF CYTOCHROMES C(7) JRNL TITL 2 INVOLVED IN FE(III) RESPIRATION BY GEOBACTER SULFURREDUCENS. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1797 222 2010 JRNL REFN ISSN 0006-3002 JRNL PMID 19857457 JRNL DOI 10.1016/J.BBABIO.2009.10.007 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 28548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1630 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1320 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.1570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1005 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 258 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1419 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1159 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1973 ; 1.413 ; 2.510 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2748 ; 0.865 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 136 ; 5.232 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 153 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1457 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 178 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 380 ; 0.428 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1355 ; 0.244 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 637 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 92 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 679 ; 0.891 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1089 ; 1.462 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 740 ; 1.696 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 883 ; 2.362 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1419 ; 0.980 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 195 ; 2.572 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1358 ; 1.413 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2871 3.4181 6.7204 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.0016 REMARK 3 T33: 0.0100 T12: -0.0053 REMARK 3 T13: -0.0045 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.3495 L22: 0.5571 REMARK 3 L33: 0.5731 L12: -0.2371 REMARK 3 L13: -0.4005 L23: 0.2346 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0600 S13: 0.0116 REMARK 3 S21: 0.0193 S22: -0.0095 S23: 0.0023 REMARK 3 S31: 0.0008 S32: 0.0296 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4214 5.3074 31.3540 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: 0.0183 REMARK 3 T33: 0.0023 T12: 0.0080 REMARK 3 T13: 0.0039 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.2289 L22: 0.5850 REMARK 3 L33: 0.2710 L12: 0.1301 REMARK 3 L13: -0.1256 L23: -0.1562 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.1042 S13: 0.0324 REMARK 3 S21: -0.0140 S22: -0.0189 S23: 0.0007 REMARK 3 S31: -0.0040 S32: -0.0410 S33: -0.0164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3H4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.74041, 1.73818, 1.78832, REMARK 200 1.69077, 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTAL OBTAINED FROM INDEX SCREEN-95 REMARK 280 (30% PEG MONOMETHYLETHER 2000, 0.1 M POTASSIUM THIOCYANATE), PH REMARK 280 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.70000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWO MOLECULES PER ASYMMETRIC UNIT; MONOMER IN SOLUTION REMARK 300 BASED ON SIZE EXCLUSION COLUMN CHROMATOGRAPHY AND DYNAMIC LIGHT REMARK 300 SCATTERING REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 ASP A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 71 REMARK 465 HIS B 0 REMARK 465 ASP B 1 REMARK 465 LYS B 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 65 CAB HEM A 74 1.91 REMARK 500 SG CYS B 51 CAB HEM B 73 1.92 REMARK 500 SG CYS A 51 CAB HEM A 73 1.92 REMARK 500 SG CYS A 27 CAB HEM A 72 1.93 REMARK 500 SG CYS B 65 CAB HEM B 74 1.94 REMARK 500 SG CYS A 30 CAC HEM A 72 1.94 REMARK 500 SG CYS A 54 CAC HEM A 73 1.94 REMARK 500 SG CYS B 27 CAB HEM B 72 1.94 REMARK 500 SG CYS B 30 CAC HEM B 72 1.97 REMARK 500 SG CYS B 54 CAC HEM B 73 2.01 REMARK 500 SG CYS A 68 CAC HEM A 74 2.02 REMARK 500 SD MET B 58 O HOH B 79 2.04 REMARK 500 SG CYS B 68 CAC HEM B 74 2.06 REMARK 500 OE2 GLU A 32 O HOH A 123 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 26 -125.01 46.00 REMARK 500 GLU B 26 -132.14 50.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 72 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 17 NE2 REMARK 620 2 HEM A 72 NA 91.4 REMARK 620 3 HEM A 72 NB 92.9 89.7 REMARK 620 4 HEM A 72 NC 90.2 178.4 89.6 REMARK 620 5 HEM A 72 ND 88.8 89.5 178.1 91.1 REMARK 620 6 HIS A 31 NE2 175.5 90.6 91.2 88.0 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 73 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 20 NE2 REMARK 620 2 HEM A 73 NA 91.4 REMARK 620 3 HEM A 73 NB 90.0 89.5 REMARK 620 4 HEM A 73 NC 89.5 179.0 90.2 REMARK 620 5 HEM A 73 ND 90.3 91.0 179.5 89.3 REMARK 620 6 HIS A 55 NE2 178.4 90.1 90.5 89.0 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 74 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 NE2 REMARK 620 2 HEM A 74 NA 89.0 REMARK 620 3 HEM A 74 NB 87.2 89.2 REMARK 620 4 HEM A 74 NC 92.4 178.4 91.7 REMARK 620 5 HEM A 74 ND 94.8 90.1 178.0 88.9 REMARK 620 6 HIS A 69 NE2 176.1 88.8 89.5 89.8 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 72 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 17 NE2 REMARK 620 2 HEM B 72 NA 89.4 REMARK 620 3 HEM B 72 NB 89.8 90.7 REMARK 620 4 HEM B 72 NC 91.3 179.2 89.6 REMARK 620 5 HEM B 72 ND 91.6 88.5 178.3 91.2 REMARK 620 6 HIS B 31 NE2 177.5 88.7 88.6 90.5 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 73 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 20 NE2 REMARK 620 2 HEM B 73 NA 90.0 REMARK 620 3 HEM B 73 NB 91.4 89.2 REMARK 620 4 HEM B 73 NC 90.0 179.6 91.1 REMARK 620 5 HEM B 73 ND 89.2 90.2 179.2 89.4 REMARK 620 6 HIS B 55 NE2 175.9 94.1 88.2 85.9 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 74 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 47 NE2 REMARK 620 2 HEM B 74 NA 92.3 REMARK 620 3 HEM B 74 NB 87.4 90.2 REMARK 620 4 HEM B 74 NC 87.8 178.8 90.9 REMARK 620 5 HEM B 74 ND 93.2 89.7 179.5 89.2 REMARK 620 6 HIS B 69 NE2 177.5 87.8 90.1 92.2 89.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 72 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 73 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 74 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 72 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 73 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 74 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OS6 RELATED DB: PDB REMARK 900 CYTOCHROME C7 FROM GEOBACTER SULFURREDUCENS REMARK 900 RELATED ID: 3BXU RELATED DB: PDB REMARK 900 CYTOCHROME C7 FROM GEOBACTER SULFURREDUCENS REMARK 900 RELATED ID: 3H33 RELATED DB: PDB REMARK 900 CYTOCHROME C7 FROM GEOBACTER SULFURREDUCENS REMARK 900 RELATED ID: 3H34 RELATED DB: PDB REMARK 900 CYTOCHROME C7 FROM GEOBACTER SULFURREDUCENS DBREF 3H4N A 0 71 UNP Q74ED8 Q74ED8_GEOSL 21 92 DBREF 3H4N B 0 71 UNP Q74ED8 Q74ED8_GEOSL 21 92 SEQRES 1 A 72 HIS ASP LYS VAL VAL VAL LEU GLU ALA LYS ASN GLY ASN SEQRES 2 A 72 VAL THR PHE ASP HIS LYS LYS HIS ALA GLY VAL LYS GLY SEQRES 3 A 72 GLU CYS LYS ALA CYS HIS GLU THR GLU ALA GLY GLY LYS SEQRES 4 A 72 ILE ALA GLY MET GLY LYS ASP TRP ALA HIS LYS THR CYS SEQRES 5 A 72 THR GLY CYS HIS LYS GLU MET GLY LYS GLY PRO THR LYS SEQRES 6 A 72 CYS GLY GLU CYS HIS LYS LYS SEQRES 1 B 72 HIS ASP LYS VAL VAL VAL LEU GLU ALA LYS ASN GLY ASN SEQRES 2 B 72 VAL THR PHE ASP HIS LYS LYS HIS ALA GLY VAL LYS GLY SEQRES 3 B 72 GLU CYS LYS ALA CYS HIS GLU THR GLU ALA GLY GLY LYS SEQRES 4 B 72 ILE ALA GLY MET GLY LYS ASP TRP ALA HIS LYS THR CYS SEQRES 5 B 72 THR GLY CYS HIS LYS GLU MET GLY LYS GLY PRO THR LYS SEQRES 6 B 72 CYS GLY GLU CYS HIS LYS LYS HET HEM A 72 43 HET HEM A 73 48 HET HEM A 74 46 HET HEM B 72 43 HET HEM B 73 43 HET HEM B 74 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 6(C34 H32 FE N4 O4) FORMUL 9 HOH *195(H2 O) HELIX 1 1 ASP A 16 ALA A 21 5 6 HELIX 2 2 GLY A 25 CYS A 30 5 6 HELIX 3 3 GLY A 42 GLY A 59 1 17 HELIX 4 4 LYS A 64 HIS A 69 1 6 HELIX 5 5 HIS B 17 ALA B 21 5 5 HELIX 6 6 GLY B 25 CYS B 30 5 6 HELIX 7 7 GLY B 42 GLY B 59 1 17 HELIX 8 8 LYS B 64 HIS B 69 1 6 SHEET 1 A 2 VAL A 4 LEU A 6 0 SHEET 2 A 2 VAL A 13 PHE A 15 -1 O VAL A 13 N LEU A 6 SHEET 1 B 2 VAL B 4 LEU B 6 0 SHEET 2 B 2 VAL B 13 PHE B 15 -1 O VAL B 13 N LEU B 6 LINK NE2 HIS A 17 FE HEM A 72 1555 1555 2.06 LINK NE2 HIS A 20 FE HEM A 73 1555 1555 2.03 LINK NE2 HIS A 31 FE HEM A 72 1555 1555 2.05 LINK NE2 HIS A 47 FE HEM A 74 1555 1555 2.08 LINK NE2 HIS A 55 FE HEM A 73 1555 1555 2.02 LINK NE2 HIS A 69 FE HEM A 74 1555 1555 2.05 LINK NE2 HIS B 17 FE HEM B 72 1555 1555 2.03 LINK NE2 HIS B 20 FE HEM B 73 1555 1555 2.04 LINK NE2 HIS B 31 FE HEM B 72 1555 1555 2.01 LINK NE2 HIS B 47 FE HEM B 74 1555 1555 2.05 LINK NE2 HIS B 55 FE HEM B 73 1555 1555 2.07 LINK NE2 HIS B 69 FE HEM B 74 1555 1555 2.03 SITE 1 AC1 22 LYS A 9 PHE A 15 HIS A 17 HIS A 20 SITE 2 AC1 22 GLU A 26 CYS A 27 CYS A 30 HIS A 31 SITE 3 AC1 22 GLU A 33 ALA A 34 GLY A 35 GLY A 36 SITE 4 AC1 22 LYS A 37 ILE A 38 LYS A 43 HEM A 73 SITE 5 AC1 22 HEM A 74 HOH A 84 HOH A 109 HOH A 112 SITE 6 AC1 22 HOH A 133 HOH A 142 SITE 1 AC2 23 VAL A 13 THR A 14 ASP A 16 LYS A 19 SITE 2 AC2 23 HIS A 20 THR A 49A CYS A 51 CYS A 54 SITE 3 AC2 23 HIS A 55 MET A 58 PRO A 62 HEM A 72 SITE 4 AC2 23 HOH A 77 HOH A 78 HOH A 116 HOH A 127 SITE 5 AC2 23 HOH A 161 HOH A 172 GLY B 59 LYS B 60 SITE 6 AC2 23 GLY B 61 HOH B 100 HOH B 181 SITE 1 AC3 21 LEU A 6 GLU A 7 ALA A 8 LYS A 9 SITE 2 AC3 21 ASN A 10 LYS A 37 MET A 41 GLY A 42 SITE 3 AC3 21 LYS A 43 ALA A 46 HIS A 47 THR A 52 SITE 4 AC3 21 PRO A 62 THR A 63 LYS A 64 CYS A 65 SITE 5 AC3 21 CYS A 68 HIS A 69 HEM A 72 HOH A 87 SITE 6 AC3 21 HOH A 113 SITE 1 AC4 22 PHE B 15 HIS B 17 HIS B 20 VAL B 23 SITE 2 AC4 22 GLU B 26 CYS B 27 CYS B 30 HIS B 31 SITE 3 AC4 22 GLU B 33 GLY B 35 GLY B 36 LYS B 37 SITE 4 AC4 22 ILE B 38 MET B 41 LYS B 43 HEM B 73 SITE 5 AC4 22 HEM B 74 HOH B 80 HOH B 92 HOH B 107 SITE 6 AC4 22 HOH B 131 HOH B 168 SITE 1 AC5 18 GLU A 67 LYS A 70 THR B 14 PHE B 15 SITE 2 AC5 18 LYS B 19 HIS B 20 VAL B 23 THR B 49A SITE 3 AC5 18 CYS B 51 CYS B 54 HIS B 55 LYS B 60 SITE 4 AC5 18 PRO B 62 HEM B 72 HOH B 109 HOH B 112 SITE 5 AC5 18 HOH B 126 HOH B 179 SITE 1 AC6 23 LYS A 24 LEU B 6 GLU B 7 ALA B 8 SITE 2 AC6 23 LYS B 9 ASN B 10 HIS B 17 GLY B 42 SITE 3 AC6 23 LYS B 43 ALA B 46 HIS B 47 THR B 52 SITE 4 AC6 23 PRO B 62 THR B 63 LYS B 64 CYS B 65 SITE 5 AC6 23 CYS B 68 HIS B 69 HEM B 72 HOH B 102 SITE 6 AC6 23 HOH B 138 HOH B 193 HOH B 197 CRYST1 27.400 55.900 94.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010549 0.00000 MASTER 447 0 6 8 4 0 35 6 0 0 0 12 END