HEADER HYDROLASE 02-APR-09 3GXH TITLE CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE (DUF442) (YP_001181608.1) TITLE 2 FROM SHEWANELLA PUTREFACIENS CN-32 AT 1.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHATASE (DUF442); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA PUTREFACIENS CN-32; SOURCE 3 ORGANISM_TAXID: 319224; SOURCE 4 GENE: SPUTCN32_0073, YP_001181608.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001181608.1, PUTATIVE PHOSPHATASE (DUF442), STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, TYROSINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 24-JUL-19 3GXH 1 REMARK LINK REVDAT 3 25-OCT-17 3GXH 1 REMARK REVDAT 2 13-JUL-11 3GXH 1 VERSN REVDAT 1 21-APR-09 3GXH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE (DUF442) JRNL TITL 2 (YP_001181608.1) FROM SHEWANELLA PUTREFACIENS CN-32 AT 1.40 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 60434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3927 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2404 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2663 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1728 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3664 ; 1.672 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4295 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 5.819 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;36.790 ;26.691 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;12.421 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.882 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3042 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 476 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1625 ; 1.628 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 640 ; 0.708 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2640 ; 2.728 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1038 ; 4.079 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 6.269 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 26 A 178 4 REMARK 3 1 B 26 B 178 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1774 ; 0.540 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1774 ; 1.490 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6809 12.1965 9.1826 REMARK 3 T TENSOR REMARK 3 T11: 0.0286 T22: 0.0017 REMARK 3 T33: 0.0210 T12: -0.0002 REMARK 3 T13: 0.0078 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.7335 L22: 0.7546 REMARK 3 L33: 0.7308 L12: -0.0627 REMARK 3 L13: 0.1839 L23: -0.0951 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0275 S13: 0.0972 REMARK 3 S21: -0.0473 S22: -0.0103 S23: 0.0127 REMARK 3 S31: -0.1081 S32: 0.0204 S33: 0.0096 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 178 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3015 -13.7484 10.1622 REMARK 3 T TENSOR REMARK 3 T11: 0.0106 T22: 0.0007 REMARK 3 T33: 0.0296 T12: 0.0008 REMARK 3 T13: 0.0152 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.9328 L22: 0.7076 REMARK 3 L33: 0.4368 L12: -0.0186 REMARK 3 L13: -0.3377 L23: 0.1536 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.0008 S13: -0.0792 REMARK 3 S21: -0.0531 S22: -0.0203 S23: -0.1094 REMARK 3 S31: 0.0183 S32: -0.0105 S33: 0.0311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.85 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. CL, SO4, EDO MODELED IS PRESENT IN CRYTALLIZATION OR CRYO REMARK 3 SOLUTION. REMARK 4 REMARK 4 3GXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97828 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60504 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.853 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.53 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0000M (NH4)2SO4, 0.1M TRIS PH 8.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.65150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.18200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.76400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.18200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.65150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.76400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY INDICATES THAT THE REMARK 300 MONOMERIC FORM IS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 465 ASN B 23 REMARK 465 ILE B 24 REMARK 465 GLU B 25 REMARK 465 ASP B 157 REMARK 465 GLU B 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 23 CG OD1 ND2 REMARK 470 LYS A 74 CD CE NZ REMARK 470 ASP A 157 CG OD1 OD2 REMARK 470 LYS B 82 NZ REMARK 470 LYS B 117 CD CE NZ REMARK 470 LYS B 141 CE NZ REMARK 470 LEU B 159 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS A 178 O HOH B 242 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 79 80.61 -152.93 REMARK 500 ASN A 100 65.84 -151.42 REMARK 500 CYS A 125 -137.67 -145.50 REMARK 500 TYR A 162 78.57 -118.34 REMARK 500 ASP B 79 72.76 -150.94 REMARK 500 ASN B 100 61.21 -154.99 REMARK 500 CYS B 125 -135.40 -143.52 REMARK 500 MSE B 152 45.86 -99.04 REMARK 500 MSE B 152 50.59 -99.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 10 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396500 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 23-178) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GXH A 23 178 UNP A4Y1H6 A4Y1H6_SHEPC 23 178 DBREF 3GXH B 23 178 UNP A4Y1H6 A4Y1H6_SHEPC 23 178 SEQADV 3GXH GLY A 0 UNP A4Y1H6 LEADER SEQUENCE SEQADV 3GXH GLY B 0 UNP A4Y1H6 LEADER SEQUENCE SEQRES 1 A 157 GLY ASN ILE GLU SER ILE GLU ASN LEU GLN GLY ILE ARG SEQRES 2 A 157 ALA LEU GLN GLN GLN ALA PRO GLN LEU LEU SER SER GLY SEQRES 3 A 157 LEU PRO ASN GLU GLN GLN PHE SER LEU LEU LYS GLN ALA SEQRES 4 A 157 GLY VAL ASP VAL VAL ILE ASN LEU MSE PRO ASP SER SER SEQRES 5 A 157 LYS ASP ALA HIS PRO ASP GLU GLY LYS LEU VAL THR GLN SEQRES 6 A 157 ALA GLY MSE ASP TYR VAL TYR ILE PRO VAL ASP TRP GLN SEQRES 7 A 157 ASN PRO LYS VAL GLU ASP VAL GLU ALA PHE PHE ALA ALA SEQRES 8 A 157 MSE ASP GLN HIS LYS GLY LYS ASP VAL LEU VAL HIS CYS SEQRES 9 A 157 LEU ALA ASN TYR ARG ALA SER ALA PHE ALA TYR LEU TYR SEQRES 10 A 157 GLN LEU LYS GLN GLY GLN ASN PRO ASN MSE ALA GLN THR SEQRES 11 A 157 MSE THR PRO TRP ASN ASP GLU LEU ALA ILE TYR PRO LYS SEQRES 12 A 157 TRP GLN ALA LEU LEU THR GLU VAL SER ALA LYS TYR GLY SEQRES 13 A 157 HIS SEQRES 1 B 157 GLY ASN ILE GLU SER ILE GLU ASN LEU GLN GLY ILE ARG SEQRES 2 B 157 ALA LEU GLN GLN GLN ALA PRO GLN LEU LEU SER SER GLY SEQRES 3 B 157 LEU PRO ASN GLU GLN GLN PHE SER LEU LEU LYS GLN ALA SEQRES 4 B 157 GLY VAL ASP VAL VAL ILE ASN LEU MSE PRO ASP SER SER SEQRES 5 B 157 LYS ASP ALA HIS PRO ASP GLU GLY LYS LEU VAL THR GLN SEQRES 6 B 157 ALA GLY MSE ASP TYR VAL TYR ILE PRO VAL ASP TRP GLN SEQRES 7 B 157 ASN PRO LYS VAL GLU ASP VAL GLU ALA PHE PHE ALA ALA SEQRES 8 B 157 MSE ASP GLN HIS LYS GLY LYS ASP VAL LEU VAL HIS CYS SEQRES 9 B 157 LEU ALA ASN TYR ARG ALA SER ALA PHE ALA TYR LEU TYR SEQRES 10 B 157 GLN LEU LYS GLN GLY GLN ASN PRO ASN MSE ALA GLN THR SEQRES 11 B 157 MSE THR PRO TRP ASN ASP GLU LEU ALA ILE TYR PRO LYS SEQRES 12 B 157 TRP GLN ALA LEU LEU THR GLU VAL SER ALA LYS TYR GLY SEQRES 13 B 157 HIS MODRES 3GXH MSE A 69 MET SELENOMETHIONINE MODRES 3GXH MSE A 89 MET SELENOMETHIONINE MODRES 3GXH MSE A 113 MET SELENOMETHIONINE MODRES 3GXH MSE A 148 MET SELENOMETHIONINE MODRES 3GXH MSE A 152 MET SELENOMETHIONINE MODRES 3GXH MSE B 69 MET SELENOMETHIONINE MODRES 3GXH MSE B 89 MET SELENOMETHIONINE MODRES 3GXH MSE B 113 MET SELENOMETHIONINE MODRES 3GXH MSE B 148 MET SELENOMETHIONINE MODRES 3GXH MSE B 152 MET SELENOMETHIONINE HET MSE A 69 13 HET MSE A 89 8 HET MSE A 113 8 HET MSE A 148 8 HET MSE A 152 8 HET MSE B 69 8 HET MSE B 89 8 HET MSE B 113 8 HET MSE B 148 8 HET MSE B 152 8 HET CL A 1 1 HET SO4 A 5 5 HET SO4 A 6 5 HET SO4 A 7 5 HET EDO A 8 4 HET CL B 2 1 HET CL B 3 1 HET SO4 B 4 5 HET EDO B 9 4 HET EDO B 10 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 4 SO4 4(O4 S 2-) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 13 HOH *343(H2 O) HELIX 1 1 ASN A 23 ASN A 29 1 7 HELIX 2 2 ASN A 50 ALA A 60 1 11 HELIX 3 3 ASP A 79 ALA A 87 1 9 HELIX 4 4 LYS A 102 HIS A 116 1 15 HELIX 5 5 ASN A 128 GLN A 142 1 15 HELIX 6 6 ASN A 147 MSE A 152 1 6 HELIX 7 7 THR A 153 ASN A 156 5 4 HELIX 8 8 GLU A 158 ILE A 161 5 4 HELIX 9 9 TYR A 162 TYR A 176 1 15 HELIX 10 10 SER B 26 GLN B 31 1 6 HELIX 11 11 ASN B 50 ALA B 60 1 11 HELIX 12 12 ASP B 79 ALA B 87 1 9 HELIX 13 13 LYS B 102 HIS B 116 1 15 HELIX 14 14 ASN B 128 GLN B 142 1 15 HELIX 15 15 ASN B 147 MSE B 152 1 6 HELIX 16 16 THR B 153 ASN B 156 5 4 HELIX 17 17 TYR B 162 GLY B 177 1 16 SHEET 1 A 5 GLN A 37 ALA A 40 0 SHEET 2 A 5 LEU A 43 SER A 46 -1 O SER A 45 N GLN A 37 SHEET 3 A 5 VAL A 121 HIS A 124 1 O VAL A 121 N LEU A 44 SHEET 4 A 5 VAL A 64 ASN A 67 1 N ILE A 66 O LEU A 122 SHEET 5 A 5 ASP A 90 TYR A 93 1 O VAL A 92 N ASN A 67 SHEET 1 B 5 GLN B 37 ALA B 40 0 SHEET 2 B 5 LEU B 43 SER B 46 -1 O LEU B 43 N GLN B 39 SHEET 3 B 5 VAL B 121 HIS B 124 1 O VAL B 121 N LEU B 44 SHEET 4 B 5 VAL B 64 ASN B 67 1 N ILE B 66 O LEU B 122 SHEET 5 B 5 ASP B 90 TYR B 93 1 O ASP B 90 N VAL B 65 LINK C LEU A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N PRO A 70 1555 1555 1.33 LINK C GLY A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ASP A 90 1555 1555 1.33 LINK C ALA A 112 N MSE A 113 1555 1555 1.32 LINK C MSE A 113 N ASP A 114 1555 1555 1.33 LINK C ASN A 147 N MSE A 148 1555 1555 1.34 LINK C MSE A 148 N ALA A 149 1555 1555 1.32 LINK C THR A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N THR A 153 1555 1555 1.33 LINK C LEU B 68 N MSE B 69 1555 1555 1.34 LINK C MSE B 69 N PRO B 70 1555 1555 1.35 LINK C GLY B 88 N MSE B 89 1555 1555 1.32 LINK C MSE B 89 N ASP B 90 1555 1555 1.34 LINK C ALA B 112 N MSE B 113 1555 1555 1.32 LINK C MSE B 113 N ASP B 114 1555 1555 1.32 LINK C ASN B 147 N MSE B 148 1555 1555 1.33 LINK C MSE B 148 N ALA B 149 1555 1555 1.33 LINK C THR B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N ATHR B 153 1555 1555 1.33 LINK C MSE B 152 N BTHR B 153 1555 1555 1.33 SITE 1 AC1 4 ASN A 50 GLU A 51 ASN B 50 GLU B 51 SITE 1 AC2 10 CYS A 125 LEU A 126 ALA A 127 ASN A 128 SITE 2 AC2 10 TYR A 129 ARG A 130 HOH A 248 HIS B 178 SITE 3 AC2 10 HOH B 209 HOH B 302 SITE 1 AC3 7 ARG A 34 TYR A 129 HOH A 227 HOH A 250 SITE 2 AC3 7 CL B 2 HOH B 268 HOH B 388 SITE 1 AC4 5 ARG A 34 ALA A 35 HOH A 227 ARG B 34 SITE 2 AC4 5 HOH B 336 SITE 1 AC5 6 ARG A 34 LEU A 48 ASN A 50 HOH B 11 SITE 2 AC5 6 ASN B 50 HOH B 223 SITE 1 AC6 4 SO4 A 6 ARG A 34 ALA B 35 HOH B 238 SITE 1 AC7 2 SER B 73 LYS B 74 SITE 1 AC8 7 CYS B 125 LEU B 126 ALA B 127 ASN B 128 SITE 2 AC8 7 TYR B 129 ARG B 130 HOH B 220 SITE 1 AC9 6 ALA B 60 VAL B 62 ASP B 120 GLN B 166 SITE 2 AC9 6 HOH B 233 HOH B 309 SITE 1 BC1 5 PRO B 70 ASP B 71 SER B 72 TYR B 93 SITE 2 BC1 5 HOH B 366 CRYST1 57.303 57.528 92.364 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010827 0.00000 MASTER 430 0 20 17 10 0 18 6 0 0 0 26 END