HEADER HYDROLASE 30-MAR-09 3GUX TITLE CRYSTAL STRUCTURE OF A PUTATIVE ZN-DEPENDENT EXOPEPTIDASE (BVU_1317) TITLE 2 FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ZN-DEPENDENT EXOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LEUCINE AMINOPEPTIDASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS ATCC 8482; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 ATCC: 8482; SOURCE 5 GENE: BVU_1317, YP_001298628.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS AMINOPEPTIDASE, PHOSPHORYLASE/HYDROLASE-LIKE FOLD, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 24-JUL-19 3GUX 1 REMARK LINK REVDAT 4 25-OCT-17 3GUX 1 REMARK REVDAT 3 13-JUL-11 3GUX 1 VERSN REVDAT 2 23-MAR-11 3GUX 1 HEADER TITLE KEYWDS REVDAT 1 07-APR-09 3GUX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ZN-DEPENDENT EXOPEPTIDASE JRNL TITL 2 (YP_001298628.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.80 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 55877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2836 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : 2.80000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4028 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2649 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5471 ; 1.745 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6449 ; 1.280 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 4.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;36.160 ;24.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;11.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 582 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4610 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 840 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2505 ; 2.127 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1031 ; 0.636 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4000 ; 3.214 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1523 ; 4.983 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1471 ; 6.563 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5087 36.6073 120.8205 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.4036 REMARK 3 T33: 0.1292 T12: -0.1873 REMARK 3 T13: 0.0414 T23: -0.1322 REMARK 3 L TENSOR REMARK 3 L11: 2.6659 L22: 4.3897 REMARK 3 L33: 9.4995 L12: 1.4514 REMARK 3 L13: 2.4402 L23: 5.3881 REMARK 3 S TENSOR REMARK 3 S11: -0.3614 S12: -0.0662 S13: 0.1977 REMARK 3 S21: -0.9383 S22: 0.5427 S23: -0.1814 REMARK 3 S31: -1.4282 S32: 1.0091 S33: -0.1813 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6189 20.2426 85.3024 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0749 REMARK 3 T33: 0.1057 T12: 0.0684 REMARK 3 T13: -0.0062 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.1845 L22: 1.6226 REMARK 3 L33: 3.2353 L12: -0.1714 REMARK 3 L13: 0.1090 L23: -0.7239 REMARK 3 S TENSOR REMARK 3 S11: -0.1586 S12: -0.1648 S13: -0.0048 REMARK 3 S21: 0.2258 S22: 0.2561 S23: 0.0324 REMARK 3 S31: -0.3384 S32: -0.3259 S33: -0.0974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4.ACETATE ION AND ETHYLENE GLYCOL MOLECULE FROM CRYSTALLIZATION REMARK 3 AND CROPROTECTION CONDITIONS ARE MODELED IN THE STRUCTURE. 5.A REMARK 3 RAMACHANDRAN OUTLIER IS OBSERVED ON RESIDUE 196 OF CHAIN A IN A REMARK 3 REGION OF POOR ELECTRON DENSITY. REMARK 4 REMARK 4 3GUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97916 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.583 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NH4ACETATE, 20.0000% PEG-3350, REMARK 280 NO BUFFER PH 7.1, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.31000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 140.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE RESULTS FROM SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 22 REMARK 465 ASN A 23 REMARK 465 SER A 24 REMARK 465 LYS A 25 REMARK 465 SER A 26 REMARK 465 ARG A 27 REMARK 465 ASN A 28 REMARK 465 ASP A 29 REMARK 465 ARG A 30 REMARK 465 THR A 31 REMARK 465 GLU A 32 REMARK 465 THR A 33 REMARK 465 VAL A 34 REMARK 465 ASP A 35 REMARK 465 LYS A 36 REMARK 465 TYR A 130 REMARK 465 ALA A 131 REMARK 465 ASP A 132 REMARK 465 ASN A 133 REMARK 465 ASP A 134 REMARK 465 PRO A 135 REMARK 465 ASP A 136 REMARK 465 PRO A 137 REMARK 465 LYS A 138 REMARK 465 ASN A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 THR A 142 REMARK 465 PRO A 143 REMARK 465 ILE A 144 REMARK 465 LEU A 145 REMARK 465 GLY A 146 REMARK 465 VAL A 147 REMARK 465 ASN A 148 REMARK 465 ASP A 149 REMARK 465 GLY A 184 REMARK 465 ILE A 185 REMARK 465 PRO A 186 REMARK 465 GLU A 187 REMARK 465 PHE A 188 REMARK 465 TYR A 189 REMARK 465 ASP A 190 REMARK 465 GLY A 191 REMARK 465 LYS A 192 REMARK 465 TYR A 193 REMARK 465 LYS A 194 REMARK 465 ALA A 293 REMARK 465 GLY A 294 REMARK 465 ASN A 295 REMARK 465 PRO A 296 REMARK 465 GLN A 297 REMARK 465 SER A 298 REMARK 465 SER A 299 REMARK 465 PHE A 300 REMARK 465 GLY A 301 REMARK 465 SER A 302 REMARK 465 PHE A 303 REMARK 465 TRP A 304 REMARK 465 HIS A 305 REMARK 465 THR A 306 REMARK 465 VAL A 307 REMARK 465 ASN A 308 REMARK 465 ASP A 309 REMARK 465 THR A 310 REMARK 465 MSE A 311 REMARK 465 GLU A 312 REMARK 465 GLY B 0 REMARK 465 GLY B 22 REMARK 465 ASN B 23 REMARK 465 SER B 24 REMARK 465 LYS B 25 REMARK 465 SER B 26 REMARK 465 ARG B 27 REMARK 465 ASN B 28 REMARK 465 ASP B 29 REMARK 465 ARG B 30 REMARK 465 THR B 31 REMARK 465 GLU B 32 REMARK 465 THR B 33 REMARK 465 VAL B 34 REMARK 465 ASP B 35 REMARK 465 LYS B 36 REMARK 465 TYR B 130 REMARK 465 ALA B 131 REMARK 465 ASP B 132 REMARK 465 ASN B 133 REMARK 465 ASP B 134 REMARK 465 PRO B 135 REMARK 465 ASP B 136 REMARK 465 PRO B 137 REMARK 465 LYS B 138 REMARK 465 ASN B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 THR B 142 REMARK 465 PRO B 143 REMARK 465 ILE B 144 REMARK 465 LEU B 145 REMARK 465 GLY B 146 REMARK 465 VAL B 147 REMARK 465 ASN B 148 REMARK 465 ASP B 149 REMARK 465 ILE B 185 REMARK 465 PRO B 186 REMARK 465 GLU B 187 REMARK 465 PHE B 188 REMARK 465 TYR B 189 REMARK 465 ASP B 190 REMARK 465 GLY B 191 REMARK 465 LYS B 192 REMARK 465 TYR B 193 REMARK 465 LYS B 194 REMARK 465 GLN B 195 REMARK 465 ASP B 196 REMARK 465 ALA B 293 REMARK 465 GLY B 294 REMARK 465 ASN B 295 REMARK 465 PRO B 296 REMARK 465 GLN B 297 REMARK 465 SER B 298 REMARK 465 SER B 299 REMARK 465 PHE B 300 REMARK 465 GLY B 301 REMARK 465 SER B 302 REMARK 465 PHE B 303 REMARK 465 TRP B 304 REMARK 465 HIS B 305 REMARK 465 THR B 306 REMARK 465 VAL B 307 REMARK 465 ASN B 308 REMARK 465 ASP B 309 REMARK 465 THR B 310 REMARK 465 MSE B 311 REMARK 465 GLU B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ILE A 39 CG1 CG2 CD1 REMARK 470 LYS A 40 CD CE NZ REMARK 470 GLN A 67 CD OE1 NE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 LYS A 82 CE NZ REMARK 470 LYS A 86 CD CE NZ REMARK 470 TYR A 88 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 89 CG OD1 ND2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 ARG A 128 NE CZ NH1 NH2 REMARK 470 LYS A 166 CD CE NZ REMARK 470 GLN A 195 OE1 NE2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 212 CD OE1 NE2 REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 LYS A 228 CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 ARG A 282 NE CZ NH1 NH2 REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 ASN A 313 CG OD1 ND2 REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 GLU B 37 OE1 OE2 REMARK 470 LYS B 40 NZ REMARK 470 ARG B 128 CD NE CZ NH1 NH2 REMARK 470 LYS B 166 NZ REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 212 CD OE1 NE2 REMARK 470 ARG B 282 CD NE CZ NH1 NH2 REMARK 470 ASP B 292 CG OD1 OD2 REMARK 470 LYS B 334 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE B 327 CG MSE B 327 SE -0.206 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 282 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG B 62 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 196 1.75 -52.67 REMARK 500 PRO A 209 170.72 -59.72 REMARK 500 MSE A 224 67.22 61.63 REMARK 500 ALA A 242 46.98 -149.11 REMARK 500 LYS A 279 -60.69 -98.70 REMARK 500 ASN B 213 59.57 33.36 REMARK 500 MSE B 224 70.26 59.32 REMARK 500 ALA B 242 45.56 -146.48 REMARK 500 ALA B 242 47.39 -146.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 335 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390181 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 22-334 OF THE FULL LENGTH PROTEIN. DBREF 3GUX A 22 334 UNP A6KZZ2 A6KZZ2_BACV8 22 334 DBREF 3GUX B 22 334 UNP A6KZZ2 A6KZZ2_BACV8 22 334 SEQADV 3GUX GLY A 0 UNP A6KZZ2 LEADER SEQUENCE SEQADV 3GUX GLY B 0 UNP A6KZZ2 LEADER SEQUENCE SEQRES 1 A 314 GLY GLY ASN SER LYS SER ARG ASN ASP ARG THR GLU THR SEQRES 2 A 314 VAL ASP LYS GLU VAL ILE LYS ALA PRO GLU PHE ASP ALA SEQRES 3 A 314 ASP SER ALA TYR GLN TYR ILE GLN VAL GLN ALA ASP PHE SEQRES 4 A 314 GLY PRO ARG VAL PRO ASN THR GLN ALA HIS LYS GLU CYS SEQRES 5 A 314 GLY GLU TYR LEU ALA GLY GLN LEU GLU LYS PHE GLY ALA SEQRES 6 A 314 LYS VAL TYR ASN GLN TYR ALA ASP LEU ILE ALA TYR ASP SEQRES 7 A 314 GLY THR ILE LEU LYS SER ARG ASN ILE ILE GLY ALA TYR SEQRES 8 A 314 LYS PRO GLU SER LYS LYS ARG ILE LEU LEU CYS ALA HIS SEQRES 9 A 314 TRP ASP SER ARG PRO TYR ALA ASP ASN ASP PRO ASP PRO SEQRES 10 A 314 LYS ASN HIS HIS THR PRO ILE LEU GLY VAL ASN ASP GLY SEQRES 11 A 314 ALA SER GLY VAL GLY VAL LEU LEU GLU ILE ALA ARG GLN SEQRES 12 A 314 ILE GLN LYS GLU GLN PRO ALA LEU GLY ILE ASP ILE VAL SEQRES 13 A 314 PHE PHE ASP SER GLU ASP TYR GLY ILE PRO GLU PHE TYR SEQRES 14 A 314 ASP GLY LYS TYR LYS GLN ASP THR TRP CYS LEU GLY SER SEQRES 15 A 314 GLN TYR TRP ALA ARG THR PRO HIS VAL GLN ASN TYR ASN SEQRES 16 A 314 ALA ARG TYR GLY ILE LEU LEU ASP MSE VAL GLY GLY LYS SEQRES 17 A 314 ASP ALA THR PHE TYR TYR GLU GLY TYR SER ALA ARG THR SEQRES 18 A 314 ALA ARG SER GLU MSE LYS LYS ILE TRP LYS LYS ALA HIS SEQRES 19 A 314 GLU LEU GLY TYR GLY LYS TYR PHE VAL LYS GLU ASP GLY SEQRES 20 A 314 GLY GLU THR VAL ASP ASP HIS ILE TYR VAL ASN LYS LEU SEQRES 21 A 314 ALA ARG ILE PRO CYS VAL ASP ILE ILE ASN TYR ASP ALA SEQRES 22 A 314 GLY ASN PRO GLN SER SER PHE GLY SER PHE TRP HIS THR SEQRES 23 A 314 VAL ASN ASP THR MSE GLU ASN ILE ASP ARG ASN THR LEU SEQRES 24 A 314 LYS ALA VAL GLY GLN THR VAL MSE ASP VAL ILE TYR ASN SEQRES 25 A 314 GLU LYS SEQRES 1 B 314 GLY GLY ASN SER LYS SER ARG ASN ASP ARG THR GLU THR SEQRES 2 B 314 VAL ASP LYS GLU VAL ILE LYS ALA PRO GLU PHE ASP ALA SEQRES 3 B 314 ASP SER ALA TYR GLN TYR ILE GLN VAL GLN ALA ASP PHE SEQRES 4 B 314 GLY PRO ARG VAL PRO ASN THR GLN ALA HIS LYS GLU CYS SEQRES 5 B 314 GLY GLU TYR LEU ALA GLY GLN LEU GLU LYS PHE GLY ALA SEQRES 6 B 314 LYS VAL TYR ASN GLN TYR ALA ASP LEU ILE ALA TYR ASP SEQRES 7 B 314 GLY THR ILE LEU LYS SER ARG ASN ILE ILE GLY ALA TYR SEQRES 8 B 314 LYS PRO GLU SER LYS LYS ARG ILE LEU LEU CYS ALA HIS SEQRES 9 B 314 TRP ASP SER ARG PRO TYR ALA ASP ASN ASP PRO ASP PRO SEQRES 10 B 314 LYS ASN HIS HIS THR PRO ILE LEU GLY VAL ASN ASP GLY SEQRES 11 B 314 ALA SER GLY VAL GLY VAL LEU LEU GLU ILE ALA ARG GLN SEQRES 12 B 314 ILE GLN LYS GLU GLN PRO ALA LEU GLY ILE ASP ILE VAL SEQRES 13 B 314 PHE PHE ASP SER GLU ASP TYR GLY ILE PRO GLU PHE TYR SEQRES 14 B 314 ASP GLY LYS TYR LYS GLN ASP THR TRP CYS LEU GLY SER SEQRES 15 B 314 GLN TYR TRP ALA ARG THR PRO HIS VAL GLN ASN TYR ASN SEQRES 16 B 314 ALA ARG TYR GLY ILE LEU LEU ASP MSE VAL GLY GLY LYS SEQRES 17 B 314 ASP ALA THR PHE TYR TYR GLU GLY TYR SER ALA ARG THR SEQRES 18 B 314 ALA ARG SER GLU MSE LYS LYS ILE TRP LYS LYS ALA HIS SEQRES 19 B 314 GLU LEU GLY TYR GLY LYS TYR PHE VAL LYS GLU ASP GLY SEQRES 20 B 314 GLY GLU THR VAL ASP ASP HIS ILE TYR VAL ASN LYS LEU SEQRES 21 B 314 ALA ARG ILE PRO CYS VAL ASP ILE ILE ASN TYR ASP ALA SEQRES 22 B 314 GLY ASN PRO GLN SER SER PHE GLY SER PHE TRP HIS THR SEQRES 23 B 314 VAL ASN ASP THR MSE GLU ASN ILE ASP ARG ASN THR LEU SEQRES 24 B 314 LYS ALA VAL GLY GLN THR VAL MSE ASP VAL ILE TYR ASN SEQRES 25 B 314 GLU LYS MODRES 3GUX MSE A 224 MET SELENOMETHIONINE MODRES 3GUX MSE A 246 MET SELENOMETHIONINE MODRES 3GUX MSE A 327 MET SELENOMETHIONINE MODRES 3GUX MSE B 224 MET SELENOMETHIONINE MODRES 3GUX MSE B 246 MET SELENOMETHIONINE MODRES 3GUX MSE B 327 MET SELENOMETHIONINE HET MSE A 224 8 HET MSE A 246 8 HET MSE A 327 8 HET MSE B 224 8 HET MSE B 246 8 HET MSE B 327 8 HET ACT A 335 4 HET EDO A 336 4 HET ACT B 335 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *282(H2 O) HELIX 1 1 ASP A 45 ASP A 58 1 14 HELIX 2 2 THR A 66 PHE A 83 1 18 HELIX 3 3 GLY A 150 GLU A 167 1 18 HELIX 4 4 CYS A 199 THR A 208 1 10 HELIX 5 5 TYR A 237 ALA A 242 1 6 HELIX 6 6 ALA A 242 GLY A 257 1 16 HELIX 7 7 ASP A 272 ALA A 281 1 10 HELIX 8 8 ASP A 315 ASN A 332 1 18 HELIX 9 9 ASP B 45 PHE B 59 1 15 HELIX 10 10 THR B 66 PHE B 83 1 18 HELIX 11 11 GLY B 150 GLU B 167 1 18 HELIX 12 12 CYS B 199 THR B 208 1 10 HELIX 13 13 GLU B 235 ALA B 242 1 8 HELIX 14 14 ALA B 242 GLY B 257 1 16 HELIX 15 15 ASP B 272 ARG B 282 1 11 HELIX 16 16 ASP B 315 ASN B 332 1 18 SHEET 1 A 6 LYS A 86 ILE A 95 0 SHEET 2 A 6 ILE A 101 TYR A 111 -1 O ASN A 106 N GLN A 90 SHEET 3 A 6 GLY A 172 PHE A 178 -1 O ILE A 175 N GLY A 109 SHEET 4 A 6 ARG A 118 HIS A 124 1 N LEU A 121 O ASP A 174 SHEET 5 A 6 TYR A 218 ASP A 223 1 O LEU A 222 N CYS A 122 SHEET 6 A 6 CYS A 285 ILE A 289 1 O VAL A 286 N LEU A 221 SHEET 1 B 2 PHE A 232 TYR A 234 0 SHEET 2 B 2 PHE A 262 ASP A 266 1 O GLU A 265 N TYR A 234 SHEET 1 C 6 LYS B 86 ILE B 95 0 SHEET 2 C 6 ILE B 101 TYR B 111 -1 O ILE B 108 N TYR B 88 SHEET 3 C 6 GLY B 172 PHE B 178 -1 O PHE B 177 N ILE B 107 SHEET 4 C 6 ARG B 118 HIS B 124 1 N LEU B 121 O ASP B 174 SHEET 5 C 6 GLY B 219 ASP B 223 1 O ILE B 220 N CYS B 122 SHEET 6 C 6 CYS B 285 ILE B 289 1 O ILE B 288 N LEU B 221 SHEET 1 D 2 PHE B 232 TYR B 234 0 SHEET 2 D 2 PHE B 262 ASP B 266 1 O GLU B 265 N TYR B 234 LINK C ASP A 223 N MSE A 224 1555 1555 1.34 LINK C MSE A 224 N VAL A 225 1555 1555 1.34 LINK C GLU A 245 N MSE A 246 1555 1555 1.32 LINK C MSE A 246 N LYS A 247 1555 1555 1.34 LINK C VAL A 326 N MSE A 327 1555 1555 1.32 LINK C MSE A 327 N ASP A 328 1555 1555 1.33 LINK C ASP B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N VAL B 225 1555 1555 1.33 LINK C GLU B 245 N MSE B 246 1555 1555 1.32 LINK C MSE B 246 N LYS B 247 1555 1555 1.32 LINK C VAL B 326 N MSE B 327 1555 1555 1.32 LINK C MSE B 327 N ASP B 328 1555 1555 1.33 SITE 1 AC1 7 ASN A 65 THR A 66 HIS A 69 LYS A 70 SITE 2 AC1 7 LYS A 103 HOH A 340 HOH A 482 SITE 1 AC2 5 ASP A 47 HIS A 254 ASN A 317 LYS A 320 SITE 2 AC2 5 HOH A 456 SITE 1 AC3 7 ASN B 65 THR B 66 HIS B 69 LYS B 70 SITE 2 AC3 7 HOH B 368 HOH B 440 HOH B 475 CRYST1 42.620 49.060 281.360 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003554 0.00000 MASTER 565 0 9 16 16 0 6 6 0 0 0 50 END