HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-MAR-09 3GNJ TITLE THE CRYSTAL STRUCTURE OF A THIOREDOXIN-RELATED PROTEIN FROM TITLE 2 DESULFITOBACTERIUM HAFNIENSE DCB COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE DCB-2; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB; SOURCE 5 GENE: DESULFITOBACTERIUM HAFNIENSE, DHAF_4889; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS APC92103, THIOREDOXIN, DESULFITOBACTERIUM HAFNIENSE DCB, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,L.VOLKART,M.GU,J.N.KINNEY,G.BABNIGG,C.KERFELD,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 3GNJ 1 VERSN REVDAT 2 26-MAY-09 3GNJ 1 AUTHOR REVDAT 1 12-MAY-09 3GNJ 0 JRNL AUTH K.TAN,L.VOLKART,M.GU,J.N.KINNEY,G.BABNIGG,C.KERFELD, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A THIOREDOXIN-RELATED PROTEIN FROM JRNL TITL 2 DESULFITOBACTERIUM HAFNIENSE DCB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 24697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.343 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3706 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4989 ; 1.685 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 6.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;39.207 ;25.911 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;19.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.646 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2823 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2204 ; 0.861 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3560 ; 1.588 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 2.950 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1423 ; 4.284 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3330 33.5980 37.5070 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.0643 REMARK 3 T33: 0.0125 T12: -0.0170 REMARK 3 T13: -0.0140 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.7249 L22: 4.8884 REMARK 3 L33: 3.1056 L12: 1.1560 REMARK 3 L13: -0.3701 L23: -0.0411 REMARK 3 S TENSOR REMARK 3 S11: 0.0808 S12: -0.2251 S13: -0.2161 REMARK 3 S21: 0.1533 S22: -0.1576 S23: -0.0750 REMARK 3 S31: 0.0270 S32: 0.0762 S33: 0.0768 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0220 51.5980 34.1920 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.0631 REMARK 3 T33: 0.1582 T12: -0.0124 REMARK 3 T13: 0.0131 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 4.9795 L22: 3.7828 REMARK 3 L33: 1.8433 L12: 0.0650 REMARK 3 L13: 0.8977 L23: 0.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.3155 S12: -0.0166 S13: 0.3201 REMARK 3 S21: -0.0749 S22: -0.2425 S23: -0.4051 REMARK 3 S31: 0.1311 S32: 0.1258 S33: -0.0730 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -2 C 108 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7380 36.7090 71.0960 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.0498 REMARK 3 T33: 0.0327 T12: -0.0087 REMARK 3 T13: -0.0378 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 4.1966 L22: 5.3240 REMARK 3 L33: 2.8695 L12: 1.5598 REMARK 3 L13: -0.0412 L23: -0.2899 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: -0.1708 S13: 0.0121 REMARK 3 S21: 0.3323 S22: -0.1579 S23: -0.1174 REMARK 3 S31: 0.0684 S32: 0.0423 S33: 0.1693 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 108 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5750 54.5060 67.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0619 REMARK 3 T33: 0.1784 T12: 0.0006 REMARK 3 T13: -0.0274 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 5.2164 L22: 3.5580 REMARK 3 L33: 1.8740 L12: 0.3989 REMARK 3 L13: 0.7132 L23: 0.2081 REMARK 3 S TENSOR REMARK 3 S11: 0.1664 S12: 0.0711 S13: -0.1831 REMARK 3 S21: -0.0703 S22: 0.0235 S23: -0.6442 REMARK 3 S31: 0.0089 S32: 0.2205 S33: -0.1898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB052082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921, 0.97942 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/ARP/WARP/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG400 0.1M MES, 0.1M MGCL2, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.17050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED THAT THE CHAINS A REMARK 300 AND B, C AND D FORM DIMERS RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 24.21623 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -33.17050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.55527 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 5.26546 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -33.17050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 135.11055 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ASP B 108 REMARK 465 SER D -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 49 -84.65 -30.96 REMARK 500 GLU A 62 62.06 -114.97 REMARK 500 MSE B 1 -91.76 -137.93 REMARK 500 GLU B 62 58.14 -108.94 REMARK 500 SER B 70 52.43 31.78 REMARK 500 GLU C 62 57.09 -111.55 REMARK 500 MSE D 1 -81.58 -83.52 REMARK 500 GLU D 62 54.13 -113.02 REMARK 500 SER D 70 53.90 39.35 REMARK 500 LYS D 81 136.18 -174.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC92103 RELATED DB: TARGETDB DBREF 3GNJ A 1 108 UNP B8G0E7 B8G0E7_DESHD 1 108 DBREF 3GNJ B 1 108 UNP B8G0E7 B8G0E7_DESHD 1 108 DBREF 3GNJ C 1 108 UNP B8G0E7 B8G0E7_DESHD 1 108 DBREF 3GNJ D 1 108 UNP B8G0E7 B8G0E7_DESHD 1 108 SEQADV 3GNJ SER A -2 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ASN A -1 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ALA A 0 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ SER B -2 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ASN B -1 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ALA B 0 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ SER C -2 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ASN C -1 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ALA C 0 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ SER D -2 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ASN D -1 UNP B8G0E7 EXPRESSION TAG SEQADV 3GNJ ALA D 0 UNP B8G0E7 EXPRESSION TAG SEQRES 1 A 111 SER ASN ALA MSE SER LEU GLU LYS LEU ASP THR ASN THR SEQRES 2 A 111 PHE GLU GLN LEU ILE TYR ASP GLU GLY LYS ALA CYS LEU SEQRES 3 A 111 VAL MSE PHE SER ARG LYS ASN CYS HIS VAL CYS GLN LYS SEQRES 4 A 111 VAL THR PRO VAL LEU GLU GLU LEU ARG LEU ASN TYR GLU SEQRES 5 A 111 GLU SER PHE GLY PHE TYR TYR VAL ASP VAL GLU GLU GLU SEQRES 6 A 111 LYS THR LEU PHE GLN ARG PHE SER LEU LYS GLY VAL PRO SEQRES 7 A 111 GLN ILE LEU TYR PHE LYS ASP GLY GLU TYR LYS GLY LYS SEQRES 8 A 111 MSE ALA GLY ASP VAL GLU ASP ASP GLU VAL GLU GLN MSE SEQRES 9 A 111 ILE ALA ASP VAL LEU GLU ASP SEQRES 1 B 111 SER ASN ALA MSE SER LEU GLU LYS LEU ASP THR ASN THR SEQRES 2 B 111 PHE GLU GLN LEU ILE TYR ASP GLU GLY LYS ALA CYS LEU SEQRES 3 B 111 VAL MSE PHE SER ARG LYS ASN CYS HIS VAL CYS GLN LYS SEQRES 4 B 111 VAL THR PRO VAL LEU GLU GLU LEU ARG LEU ASN TYR GLU SEQRES 5 B 111 GLU SER PHE GLY PHE TYR TYR VAL ASP VAL GLU GLU GLU SEQRES 6 B 111 LYS THR LEU PHE GLN ARG PHE SER LEU LYS GLY VAL PRO SEQRES 7 B 111 GLN ILE LEU TYR PHE LYS ASP GLY GLU TYR LYS GLY LYS SEQRES 8 B 111 MSE ALA GLY ASP VAL GLU ASP ASP GLU VAL GLU GLN MSE SEQRES 9 B 111 ILE ALA ASP VAL LEU GLU ASP SEQRES 1 C 111 SER ASN ALA MSE SER LEU GLU LYS LEU ASP THR ASN THR SEQRES 2 C 111 PHE GLU GLN LEU ILE TYR ASP GLU GLY LYS ALA CYS LEU SEQRES 3 C 111 VAL MSE PHE SER ARG LYS ASN CYS HIS VAL CYS GLN LYS SEQRES 4 C 111 VAL THR PRO VAL LEU GLU GLU LEU ARG LEU ASN TYR GLU SEQRES 5 C 111 GLU SER PHE GLY PHE TYR TYR VAL ASP VAL GLU GLU GLU SEQRES 6 C 111 LYS THR LEU PHE GLN ARG PHE SER LEU LYS GLY VAL PRO SEQRES 7 C 111 GLN ILE LEU TYR PHE LYS ASP GLY GLU TYR LYS GLY LYS SEQRES 8 C 111 MSE ALA GLY ASP VAL GLU ASP ASP GLU VAL GLU GLN MSE SEQRES 9 C 111 ILE ALA ASP VAL LEU GLU ASP SEQRES 1 D 111 SER ASN ALA MSE SER LEU GLU LYS LEU ASP THR ASN THR SEQRES 2 D 111 PHE GLU GLN LEU ILE TYR ASP GLU GLY LYS ALA CYS LEU SEQRES 3 D 111 VAL MSE PHE SER ARG LYS ASN CYS HIS VAL CYS GLN LYS SEQRES 4 D 111 VAL THR PRO VAL LEU GLU GLU LEU ARG LEU ASN TYR GLU SEQRES 5 D 111 GLU SER PHE GLY PHE TYR TYR VAL ASP VAL GLU GLU GLU SEQRES 6 D 111 LYS THR LEU PHE GLN ARG PHE SER LEU LYS GLY VAL PRO SEQRES 7 D 111 GLN ILE LEU TYR PHE LYS ASP GLY GLU TYR LYS GLY LYS SEQRES 8 D 111 MSE ALA GLY ASP VAL GLU ASP ASP GLU VAL GLU GLN MSE SEQRES 9 D 111 ILE ALA ASP VAL LEU GLU ASP MODRES 3GNJ MSE A 1 MET SELENOMETHIONINE MODRES 3GNJ MSE A 25 MET SELENOMETHIONINE MODRES 3GNJ MSE A 89 MET SELENOMETHIONINE MODRES 3GNJ MSE A 101 MET SELENOMETHIONINE MODRES 3GNJ MSE B 1 MET SELENOMETHIONINE MODRES 3GNJ MSE B 25 MET SELENOMETHIONINE MODRES 3GNJ MSE B 89 MET SELENOMETHIONINE MODRES 3GNJ MSE B 101 MET SELENOMETHIONINE MODRES 3GNJ MSE C 1 MET SELENOMETHIONINE MODRES 3GNJ MSE C 25 MET SELENOMETHIONINE MODRES 3GNJ MSE C 89 MET SELENOMETHIONINE MODRES 3GNJ MSE C 101 MET SELENOMETHIONINE MODRES 3GNJ MSE D 1 MET SELENOMETHIONINE MODRES 3GNJ MSE D 25 MET SELENOMETHIONINE MODRES 3GNJ MSE D 89 MET SELENOMETHIONINE MODRES 3GNJ MSE D 101 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 25 8 HET MSE A 89 8 HET MSE A 101 8 HET MSE B 1 8 HET MSE B 25 8 HET MSE B 89 8 HET MSE B 101 8 HET MSE C 1 8 HET MSE C 25 8 HET MSE C 89 8 HET MSE C 101 8 HET MSE D 1 8 HET MSE D 25 8 HET MSE D 89 8 HET MSE D 101 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *90(H2 O) HELIX 1 1 ASP A 7 TYR A 16 1 10 HELIX 2 2 CYS A 31 TYR A 48 1 18 HELIX 3 3 GLU A 62 PHE A 69 1 8 HELIX 4 4 GLU A 94 ASP A 108 1 15 HELIX 5 5 ASP B 7 TYR B 16 1 10 HELIX 6 6 CYS B 31 LEU B 46 1 16 HELIX 7 7 GLU B 62 PHE B 69 1 8 HELIX 8 8 GLU B 94 GLU B 107 1 14 HELIX 9 9 ASP C 7 TYR C 16 1 10 HELIX 10 10 CYS C 31 GLU C 49 1 19 HELIX 11 11 GLU C 62 PHE C 69 1 8 HELIX 12 12 GLU C 94 ASP C 108 1 15 HELIX 13 13 ASP D 7 ASP D 17 1 11 HELIX 14 14 CYS D 31 LEU D 46 1 16 HELIX 15 15 GLU D 62 PHE D 69 1 8 HELIX 16 16 GLU D 94 ASP D 108 1 15 SHEET 1 A 5 GLU A 4 LYS A 5 0 SHEET 2 A 5 GLY A 53 ASP A 58 1 O TYR A 56 N GLU A 4 SHEET 3 A 5 CYS A 22 SER A 27 1 N MSE A 25 O TYR A 55 SHEET 4 A 5 GLN A 76 LYS A 81 -1 O GLN A 76 N PHE A 26 SHEET 5 A 5 GLU A 84 ALA A 90 -1 O MSE A 89 N ILE A 77 SHEET 1 B 5 GLU B 4 LYS B 5 0 SHEET 2 B 5 PHE B 52 ASP B 58 1 O TYR B 56 N GLU B 4 SHEET 3 B 5 ALA B 21 SER B 27 1 N SER B 27 O VAL B 57 SHEET 4 B 5 GLN B 76 LYS B 81 -1 O GLN B 76 N PHE B 26 SHEET 5 B 5 GLU B 84 ALA B 90 -1 O GLU B 84 N LYS B 81 SHEET 1 C 5 GLU C 4 LYS C 5 0 SHEET 2 C 5 GLY C 53 ASP C 58 1 O TYR C 56 N GLU C 4 SHEET 3 C 5 CYS C 22 SER C 27 1 N MSE C 25 O VAL C 57 SHEET 4 C 5 GLN C 76 LYS C 81 -1 O GLN C 76 N PHE C 26 SHEET 5 C 5 GLU C 84 ALA C 90 -1 O MSE C 89 N ILE C 77 SHEET 1 D 5 GLU D 4 LYS D 5 0 SHEET 2 D 5 GLY D 53 ASP D 58 1 O TYR D 56 N GLU D 4 SHEET 3 D 5 CYS D 22 SER D 27 1 N SER D 27 O VAL D 57 SHEET 4 D 5 GLN D 76 LYS D 81 -1 O GLN D 76 N PHE D 26 SHEET 5 D 5 GLU D 84 ALA D 90 -1 O MSE D 89 N ILE D 77 SSBOND 1 CYS A 31 CYS A 34 1555 1555 2.97 SSBOND 2 CYS B 31 CYS B 34 1555 1555 2.90 SSBOND 3 CYS C 31 CYS C 34 1555 1555 2.93 SSBOND 4 CYS D 31 CYS D 34 1555 1555 2.81 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C VAL A 24 N MSE A 25 1555 1555 1.32 LINK C MSE A 25 N PHE A 26 1555 1555 1.33 LINK C LYS A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ALA A 90 1555 1555 1.32 LINK C GLN A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N ILE A 102 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.32 LINK C VAL B 24 N MSE B 25 1555 1555 1.34 LINK C MSE B 25 N PHE B 26 1555 1555 1.32 LINK C LYS B 88 N MSE B 89 1555 1555 1.32 LINK C MSE B 89 N ALA B 90 1555 1555 1.33 LINK C GLN B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N ILE B 102 1555 1555 1.34 LINK C ALA C 0 N MSE C 1 1555 1555 1.32 LINK C MSE C 1 N SER C 2 1555 1555 1.34 LINK C VAL C 24 N MSE C 25 1555 1555 1.32 LINK C MSE C 25 N PHE C 26 1555 1555 1.34 LINK C LYS C 88 N MSE C 89 1555 1555 1.34 LINK C MSE C 89 N ALA C 90 1555 1555 1.32 LINK C GLN C 100 N MSE C 101 1555 1555 1.34 LINK C MSE C 101 N ILE C 102 1555 1555 1.32 LINK C ALA D 0 N MSE D 1 1555 1555 1.34 LINK C MSE D 1 N SER D 2 1555 1555 1.33 LINK C VAL D 24 N MSE D 25 1555 1555 1.32 LINK C MSE D 25 N PHE D 26 1555 1555 1.34 LINK C LYS D 88 N MSE D 89 1555 1555 1.33 LINK C MSE D 89 N ALA D 90 1555 1555 1.32 LINK C GLN D 100 N MSE D 101 1555 1555 1.33 LINK C MSE D 101 N ILE D 102 1555 1555 1.34 CISPEP 1 VAL A 74 PRO A 75 0 -9.13 CISPEP 2 VAL B 74 PRO B 75 0 -3.12 CISPEP 3 VAL C 74 PRO C 75 0 -9.27 CISPEP 4 VAL D 74 PRO D 75 0 -1.59 CRYST1 43.167 66.341 70.163 90.00 105.67 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023166 0.000000 0.006499 0.00000 SCALE2 0.000000 0.015074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014803 0.00000 MASTER 373 0 16 16 20 0 0 6 0 0 0 36 END