HEADER TRANSPORT PROTEIN 10-MAR-09 3GKJ TITLE NPC1D(NTD):25HYDROXYCHOLESTEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIEMANN-PICK C1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPC1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS OXYSTEROL, CHOLESTEROL, CHOLESTEROL TRANSFER, DISEASE MUTATION, KEYWDS 2 ENDOSOME, GLYCOPROTEIN, LYSOSOME, MEMBRANE, TRANSMEMBRANE, TRANSPORT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KWON REVDAT 4 20-OCT-21 3GKJ 1 SEQADV HETSYN REVDAT 3 29-JUL-20 3GKJ 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-JUL-11 3GKJ 1 VERSN REVDAT 1 14-JUL-09 3GKJ 0 JRNL AUTH H.J.KWON,L.ABI-MOSLEH,M.L.WANG,J.DEISENHOFER,J.L.GOLDSTEIN, JRNL AUTH 2 M.S.BROWN,R.E.INFANTE JRNL TITL STRUCTURE OF N-TERMINAL DOMAIN OF NPC1 REVEALS DISTINCT JRNL TITL 2 SUBDOMAINS FOR BINDING AND TRANSFER OF CHOLESTEROL. JRNL REF CELL(CAMBRIDGE,MASS.) V. 137 1213 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19563754 JRNL DOI 10.1016/J.CELL.2009.03.049 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 25079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1710 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1879 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2572 ; 1.476 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 5.776 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;40.671 ;25.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 284 ;15.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;11.804 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1423 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 868 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1339 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.256 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1148 ; 0.823 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1822 ; 1.345 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 815 ; 2.343 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 750 ; 3.408 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 128 REMARK 3 RESIDUE RANGE : A 139 A 227 REMARK 3 RESIDUE RANGE : A 1 A 3 REMARK 3 ORIGIN FOR THE GROUP (A): -32.0402 -32.5899 4.4570 REMARK 3 T TENSOR REMARK 3 T11: -0.0617 T22: -0.0497 REMARK 3 T33: -0.0438 T12: 0.0006 REMARK 3 T13: -0.0088 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.2350 L22: 0.7049 REMARK 3 L33: 1.2411 L12: -0.0963 REMARK 3 L13: 0.0208 L23: 0.1986 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.0027 S13: -0.0968 REMARK 3 S21: 0.0103 S22: -0.0070 S23: 0.0869 REMARK 3 S31: 0.1016 S32: -0.0566 S33: 0.0167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -28.1118 -43.7617 -14.1227 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.0197 REMARK 3 T33: 0.0030 T12: -0.0040 REMARK 3 T13: -0.0154 T23: -0.0942 REMARK 3 L TENSOR REMARK 3 L11: 1.9429 L22: 7.5921 REMARK 3 L33: 4.2455 L12: 1.4880 REMARK 3 L13: -1.7541 L23: -3.8508 REMARK 3 S TENSOR REMARK 3 S11: -0.1092 S12: 0.3229 S13: -0.3353 REMARK 3 S21: -0.6072 S22: 0.0902 S23: -0.0299 REMARK 3 S31: 0.6465 S32: -0.2285 S33: 0.0190 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): -48.7474 -22.7154 24.0008 REMARK 3 T TENSOR REMARK 3 T11: -0.0887 T22: 0.3489 REMARK 3 T33: 0.0039 T12: 0.0059 REMARK 3 T13: 0.0492 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 35.7438 L22: 3.1730 REMARK 3 L33: 18.4073 L12: -10.1564 REMARK 3 L13: -4.2112 L23: -0.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.2858 S12: -1.0526 S13: -0.3668 REMARK 3 S21: 0.1022 S22: 0.9100 S23: 0.0357 REMARK 3 S31: -0.2119 S32: -1.4253 S33: -0.6242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 100 MM MES ACID, 30 MM REMARK 280 GLYCINE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.66267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.32533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.66267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.32533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 248 REMARK 465 PRO A 249 REMARK 465 LYS A 250 REMARK 465 PRO A 251 REMARK 465 GLN A 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 28 118.56 -164.83 REMARK 500 CYS A 31 -122.59 -117.04 REMARK 500 CYS A 63 59.00 -141.83 REMARK 500 ASN A 135 16.00 59.96 REMARK 500 CYS A 243 94.44 -162.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GKH RELATED DB: PDB REMARK 900 RELATED ID: 3GKI RELATED DB: PDB DBREF 3GKJ A 23 252 UNP O15118 NPC1_HUMAN 23 252 SEQADV 3GKJ GLY A 21 UNP O15118 EXPRESSION TAG SEQADV 3GKJ ALA A 22 UNP O15118 EXPRESSION TAG SEQADV 3GKJ GLN A 70 UNP O15118 ASN 70 ENGINEERED MUTATION SEQADV 3GKJ GLN A 122 UNP O15118 ASN 122 ENGINEERED MUTATION SEQADV 3GKJ GLN A 185 UNP O15118 ASN 185 ENGINEERED MUTATION SEQRES 1 A 232 GLY ALA GLN SER CYS VAL TRP TYR GLY GLU CYS GLY ILE SEQRES 2 A 232 ALA TYR GLY ASP LYS ARG TYR ASN CYS GLU TYR SER GLY SEQRES 3 A 232 PRO PRO LYS PRO LEU PRO LYS ASP GLY TYR ASP LEU VAL SEQRES 4 A 232 GLN GLU LEU CYS PRO GLY PHE PHE PHE GLY GLN VAL SER SEQRES 5 A 232 LEU CYS CYS ASP VAL ARG GLN LEU GLN THR LEU LYS ASP SEQRES 6 A 232 ASN LEU GLN LEU PRO LEU GLN PHE LEU SER ARG CYS PRO SEQRES 7 A 232 SER CYS PHE TYR ASN LEU LEU ASN LEU PHE CYS GLU LEU SEQRES 8 A 232 THR CYS SER PRO ARG GLN SER GLN PHE LEU GLN VAL THR SEQRES 9 A 232 ALA THR GLU ASP TYR VAL ASP PRO VAL THR ASN GLN THR SEQRES 10 A 232 LYS THR ASN VAL LYS GLU LEU GLN TYR TYR VAL GLY GLN SEQRES 11 A 232 SER PHE ALA ASN ALA MET TYR ASN ALA CYS ARG ASP VAL SEQRES 12 A 232 GLU ALA PRO SER SER ASN ASP LYS ALA LEU GLY LEU LEU SEQRES 13 A 232 CYS GLY LYS ASP ALA ASP ALA CYS GLN ALA THR ASN TRP SEQRES 14 A 232 ILE GLU TYR MET PHE ASN LYS ASP ASN GLY GLN ALA PRO SEQRES 15 A 232 PHE THR ILE THR PRO VAL PHE SER ASP PHE PRO VAL HIS SEQRES 16 A 232 GLY MET GLU PRO MET ASN ASN ALA THR LYS GLY CYS ASP SEQRES 17 A 232 GLU SER VAL ASP GLU VAL THR ALA PRO CYS SER CYS GLN SEQRES 18 A 232 ASP CYS SER ILE VAL CYS GLY PRO LYS PRO GLN MODRES 3GKJ ASN A 158 ASN GLYCOSYLATION SITE MODRES 3GKJ ASN A 222 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG A 3 14 HET HC3 A 253 29 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM HC3 25-HYDROXYCHOLESTEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN HC3 (3BETA)-CHOLEST-5-ENE-3,25-DIOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 HC3 C27 H46 O2 FORMUL 5 HOH *127(H2 O) HELIX 1 1 PRO A 52 ASP A 54 5 3 HELIX 2 2 GLY A 55 CYS A 63 1 9 HELIX 3 3 PRO A 64 PHE A 67 5 4 HELIX 4 4 ASP A 76 ASN A 86 1 11 HELIX 5 5 LEU A 87 SER A 95 1 9 HELIX 6 6 CYS A 97 SER A 114 1 18 HELIX 7 7 ARG A 116 PHE A 120 1 5 HELIX 8 8 GLY A 149 ARG A 161 1 13 HELIX 9 9 ALA A 172 CYS A 177 1 6 HELIX 10 10 GLN A 185 PHE A 194 1 10 HELIX 11 11 ASN A 195 GLY A 199 5 5 HELIX 12 12 SER A 239 CYS A 247 5 9 SHEET 1 A 2 TRP A 27 TYR A 35 0 SHEET 2 A 2 LYS A 38 GLU A 43 -1 O LYS A 38 N ALA A 34 SHEET 1 B 2 LYS A 49 PRO A 50 0 SHEET 2 B 2 SER A 72 LEU A 73 -1 O LEU A 73 N LYS A 49 SHEET 1 C 3 LEU A 121 VAL A 130 0 SHEET 2 C 3 THR A 137 VAL A 148 -1 O LYS A 138 N TYR A 129 SHEET 3 C 3 THR A 204 PHE A 209 1 O VAL A 208 N VAL A 148 SSBOND 1 CYS A 25 CYS A 74 1555 1555 2.05 SSBOND 2 CYS A 31 CYS A 42 1555 1555 2.05 SSBOND 3 CYS A 63 CYS A 109 1555 1555 2.05 SSBOND 4 CYS A 75 CYS A 113 1555 1555 2.06 SSBOND 5 CYS A 97 CYS A 238 1555 1555 2.04 SSBOND 6 CYS A 100 CYS A 160 1555 1555 2.03 SSBOND 7 CYS A 177 CYS A 184 1555 1555 2.08 SSBOND 8 CYS A 227 CYS A 243 1555 1555 2.05 SSBOND 9 CYS A 240 CYS A 247 1555 1555 2.03 LINK C1 NAG A 3 ND2 ASN A 158 1555 1555 1.45 LINK ND2 ASN A 222 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CRYST1 65.926 65.926 82.988 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015169 0.008758 0.000000 0.00000 SCALE2 0.000000 0.017515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012050 0.00000 MASTER 340 0 4 12 7 0 0 6 0 0 0 18 END