HEADER TRANSPORT PROTEIN 07-MAR-09 3GJ7 TITLE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF12 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: GTPASE RAN, RAS-RELATED NUCLEAR PROTEIN, RAS-LIKE PROTEIN COMPND 5 TC4, ANDROGEN RECEPTOR-ASSOCIATED PROTEIN 24; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: NUP153 - ZINC FINGER MODULE 12: UNP RESIDUES 658-750; COMPND 12 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24, OK/SW-CL.81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: NUP153; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS G PROTEIN, GDP, RAN, NUP153, NUCLEAR PORE, ZINC FINGER, ACETYLATION, KEYWDS 2 CYTOPLASM, GTP-BINDING, HOST-VIRUS INTERACTION, ISOPEPTIDE BOND, KEYWDS 3 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, PROTEIN KEYWDS 4 TRANSPORT, TRANSPORT, UBL CONJUGATION, DNA-BINDING, METAL-BINDING, KEYWDS 5 MRNA TRANSPORT, NUCLEAR PORE COMPLEX, TRANSLOCATION, ZINC, ZINC- KEYWDS 6 FINGER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.PARTRIDGE,T.U.SCHWARTZ REVDAT 2 20-OCT-21 3GJ7 1 REMARK SEQADV LINK REVDAT 1 04-AUG-09 3GJ7 0 JRNL AUTH J.R.PARTRIDGE,T.U.SCHWARTZ JRNL TITL CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING JRNL TITL 2 ZINC FINGER DOMAIN. JRNL REF J.MOL.BIOL. V. 391 375 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19505478 JRNL DOI 10.1016/J.JMB.2009.06.011 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 36366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7560 - 4.6464 0.91 2696 165 0.1527 0.1841 REMARK 3 2 4.6464 - 3.6902 0.91 2647 137 0.1511 0.2107 REMARK 3 3 3.6902 - 3.2243 0.92 2666 145 0.1819 0.2204 REMARK 3 4 3.2243 - 2.9298 0.93 2682 153 0.2054 0.2321 REMARK 3 5 2.9298 - 2.7200 0.95 2794 132 0.2178 0.2937 REMARK 3 6 2.7200 - 2.5597 0.95 2728 152 0.2064 0.2504 REMARK 3 7 2.5597 - 2.4316 0.96 2763 141 0.1860 0.2375 REMARK 3 8 2.4316 - 2.3258 0.96 2764 147 0.2022 0.2530 REMARK 3 9 2.3258 - 2.2363 0.93 2671 140 0.2002 0.2489 REMARK 3 10 2.2363 - 2.1591 0.93 2654 172 0.2250 0.2875 REMARK 3 11 2.1591 - 2.0916 0.94 2682 129 0.2216 0.3087 REMARK 3 12 2.0916 - 2.0319 0.94 2721 153 0.2399 0.2983 REMARK 3 13 2.0319 - 1.9784 0.93 2658 135 0.2663 0.3428 REMARK 3 14 1.9784 - 1.9300 0.72 2107 90 0.3049 0.3590 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 49.85 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3773 REMARK 3 ANGLE : 1.055 5131 REMARK 3 CHIRALITY : 0.070 569 REMARK 3 PLANARITY : 0.004 645 REMARK 3 DIHEDRAL : 15.514 1379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -14.9267 5.0110 5.5920 REMARK 3 T TENSOR REMARK 3 T11: 0.5623 T22: 0.2161 REMARK 3 T33: 0.0993 T12: 0.0479 REMARK 3 T13: 0.0905 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.5800 L22: 1.2667 REMARK 3 L33: 1.7980 L12: -0.3026 REMARK 3 L13: -0.5482 L23: 0.9293 REMARK 3 S TENSOR REMARK 3 S11: -0.1955 S12: -0.1798 S13: -0.0380 REMARK 3 S21: 0.6117 S22: 0.0214 S23: 0.0902 REMARK 3 S31: 0.5078 S32: 0.4065 S33: 0.1677 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 FOR SHELL : 1.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 18-20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.56450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 208 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 GLY B 653 REMARK 465 PRO B 654 REMARK 465 LEU B 655 REMARK 465 GLY B 656 REMARK 465 SER B 657 REMARK 465 ALA B 658 REMARK 465 GLY B 659 REMARK 465 SER B 660 REMARK 465 SER B 661 REMARK 465 TRP B 662 REMARK 465 GLN B 663 REMARK 465 CYS B 664 REMARK 465 ASP B 665 REMARK 465 THR B 666 REMARK 465 CYS B 667 REMARK 465 LEU B 668 REMARK 465 LEU B 669 REMARK 465 GLN B 670 REMARK 465 ASN B 671 REMARK 465 LYS B 672 REMARK 465 VAL B 673 REMARK 465 THR B 674 REMARK 465 ASP B 675 REMARK 465 ASN B 676 REMARK 465 LYS B 677 REMARK 465 CYS B 678 REMARK 465 ILE B 679 REMARK 465 ALA B 680 REMARK 465 CYS B 681 REMARK 465 GLN B 682 REMARK 465 ALA B 683 REMARK 465 ALA B 684 REMARK 465 LYS B 685 REMARK 465 LEU B 686 REMARK 465 PRO B 687 REMARK 465 LEU B 688 REMARK 465 LYS B 689 REMARK 465 GLU B 690 REMARK 465 THR B 691 REMARK 465 ALA B 692 REMARK 465 LYS B 693 REMARK 465 GLN B 694 REMARK 465 THR B 695 REMARK 465 GLY B 696 REMARK 465 ILE B 697 REMARK 465 GLY B 698 REMARK 465 THR B 699 REMARK 465 PRO B 700 REMARK 465 SER B 701 REMARK 465 LYS B 702 REMARK 465 SER B 703 REMARK 465 ASP B 704 REMARK 465 LYS B 705 REMARK 465 PRO B 706 REMARK 465 ALA B 707 REMARK 465 SER B 708 REMARK 465 THR B 709 REMARK 465 SER B 710 REMARK 465 GLY B 711 REMARK 465 THR B 712 REMARK 465 GLY B 713 REMARK 465 PHE B 714 REMARK 465 GLY B 715 REMARK 465 ASP B 716 REMARK 465 LYS B 717 REMARK 465 PHE B 718 REMARK 465 LYS B 719 REMARK 465 PRO B 720 REMARK 465 ALA B 721 REMARK 465 ILE B 722 REMARK 465 GLY B 750 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 HIS C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 SER C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 GLN C 4 REMARK 465 GLY C 5 REMARK 465 GLU C 6 REMARK 465 LEU C 209 REMARK 465 PRO C 210 REMARK 465 ASP C 211 REMARK 465 GLU C 212 REMARK 465 ASP C 213 REMARK 465 ASP C 214 REMARK 465 ASP C 215 REMARK 465 LEU C 216 REMARK 465 GLY D 653 REMARK 465 PRO D 654 REMARK 465 LEU D 655 REMARK 465 GLY D 656 REMARK 465 SER D 657 REMARK 465 ALA D 658 REMARK 465 GLY D 659 REMARK 465 SER D 660 REMARK 465 SER D 661 REMARK 465 TRP D 662 REMARK 465 GLN D 663 REMARK 465 CYS D 664 REMARK 465 ASP D 665 REMARK 465 THR D 666 REMARK 465 CYS D 667 REMARK 465 LEU D 668 REMARK 465 LEU D 669 REMARK 465 GLN D 670 REMARK 465 ASN D 671 REMARK 465 LYS D 672 REMARK 465 VAL D 673 REMARK 465 THR D 674 REMARK 465 ASP D 675 REMARK 465 ASN D 676 REMARK 465 LYS D 677 REMARK 465 CYS D 678 REMARK 465 ILE D 679 REMARK 465 ALA D 680 REMARK 465 CYS D 681 REMARK 465 GLN D 682 REMARK 465 ALA D 683 REMARK 465 ALA D 684 REMARK 465 LYS D 685 REMARK 465 LEU D 686 REMARK 465 PRO D 687 REMARK 465 LEU D 688 REMARK 465 LYS D 689 REMARK 465 GLU D 690 REMARK 465 THR D 691 REMARK 465 ALA D 692 REMARK 465 LYS D 693 REMARK 465 GLN D 694 REMARK 465 THR D 695 REMARK 465 GLY D 696 REMARK 465 ILE D 697 REMARK 465 GLY D 698 REMARK 465 THR D 699 REMARK 465 PRO D 700 REMARK 465 SER D 701 REMARK 465 LYS D 702 REMARK 465 SER D 703 REMARK 465 ASP D 704 REMARK 465 LYS D 705 REMARK 465 PRO D 706 REMARK 465 ALA D 707 REMARK 465 SER D 708 REMARK 465 THR D 709 REMARK 465 SER D 710 REMARK 465 GLY D 711 REMARK 465 THR D 712 REMARK 465 GLY D 713 REMARK 465 PHE D 714 REMARK 465 GLY D 715 REMARK 465 ASP D 716 REMARK 465 LYS D 717 REMARK 465 PHE D 718 REMARK 465 LYS D 719 REMARK 465 PRO D 720 REMARK 465 ALA D 721 REMARK 465 ILE D 722 REMARK 465 GLY D 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 113 -129.97 80.38 REMARK 500 LYS A 142 50.76 -141.25 REMARK 500 THR A 206 60.56 -105.19 REMARK 500 GLU C 113 -121.50 63.48 REMARK 500 GLU D 745 -3.28 82.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 HOH A 239 O 90.3 REMARK 620 3 HOH A 240 O 94.5 96.4 REMARK 620 4 HOH A 241 O 171.3 93.5 92.9 REMARK 620 5 HOH A 242 O 86.3 171.2 92.0 88.9 REMARK 620 6 GDP A 302 O1B 86.6 83.8 178.9 86.0 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 727 SG REMARK 620 2 CYS B 730 SG 114.8 REMARK 620 3 CYS B 741 SG 110.2 99.8 REMARK 620 4 CYS B 744 SG 103.6 115.4 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 24 OG1 REMARK 620 2 HOH C 235 O 86.5 REMARK 620 3 HOH C 236 O 92.1 178.5 REMARK 620 4 HOH C 237 O 85.6 90.5 89.8 REMARK 620 5 HOH C 238 O 175.1 96.9 84.7 90.7 REMARK 620 6 GDP C 302 O1B 90.8 88.2 91.5 176.3 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 727 SG REMARK 620 2 CYS D 730 SG 117.3 REMARK 620 3 CYS D 741 SG 108.9 103.7 REMARK 620 4 CYS D 744 SG 96.4 117.0 113.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CH5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RANGDP-NUP153ZNF2 COMPLEX REMARK 900 RELATED ID: 2GQE RELATED DB: PDB REMARK 900 MOLECULAR CHARACTERIZATION OF THE RAN BINDING ZINC FINGER DOMAIN REMARK 900 RELATED ID: 1BYU RELATED DB: PDB REMARK 900 CANINE GDP-RAN REMARK 900 RELATED ID: 3GJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN REMARK 900 RELATED ID: 3GJ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN IN COMPLEX WITH NUP153 - REMARK 900 ZINC FINGER MODULE 2 REMARK 900 RELATED ID: 3GJ4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN IN COMPLEX WITH NUP153 - REMARK 900 ZINC FINGER MODULE 3 REMARK 900 RELATED ID: 3GJ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 4 REMARK 900 RELATED ID: 3GJ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 1 REMARK 900 RELATED ID: 3GJ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 34 DBREF 3GJ7 A 2 216 UNP P62826 RAN_HUMAN 2 216 DBREF 3GJ7 B 658 750 UNP P49791 NU153_RAT 658 750 DBREF 3GJ7 C 2 216 UNP P62826 RAN_HUMAN 2 216 DBREF 3GJ7 D 658 750 UNP P49791 NU153_RAT 658 750 SEQADV 3GJ7 GLY A -4 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 PRO A -3 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 HIS A -2 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 MET A -1 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 ALA A 0 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 SER A 1 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 SER A 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 3GJ7 GLY B 653 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 PRO B 654 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 LEU B 655 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 GLY B 656 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 SER B 657 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 GLY C -4 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 PRO C -3 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 HIS C -2 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 MET C -1 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 ALA C 0 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 SER C 1 UNP P62826 EXPRESSION TAG SEQADV 3GJ7 SER C 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 3GJ7 GLY D 653 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 PRO D 654 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 LEU D 655 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 GLY D 656 UNP P49791 EXPRESSION TAG SEQADV 3GJ7 SER D 657 UNP P49791 EXPRESSION TAG SEQRES 1 A 221 GLY PRO HIS MET ALA SER ALA ALA GLN GLY GLU PRO GLN SEQRES 2 A 221 VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY THR SEQRES 3 A 221 GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY GLU SEQRES 4 A 221 SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU VAL SEQRES 5 A 221 HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE LYS SEQRES 6 A 221 PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE GLY SEQRES 7 A 221 GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA SEQRES 8 A 221 ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR LYS SEQRES 9 A 221 ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS SEQRES 10 A 221 GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP SEQRES 11 A 221 ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL PHE SEQRES 12 A 221 HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER ALA SEQRES 13 A 221 LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU SEQRES 14 A 221 ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL SEQRES 15 A 221 ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET ASP SEQRES 16 A 221 PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU VAL SEQRES 17 A 221 ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 B 98 GLY PRO LEU GLY SER ALA GLY SER SER TRP GLN CYS ASP SEQRES 2 B 98 THR CYS LEU LEU GLN ASN LYS VAL THR ASP ASN LYS CYS SEQRES 3 B 98 ILE ALA CYS GLN ALA ALA LYS LEU PRO LEU LYS GLU THR SEQRES 4 B 98 ALA LYS GLN THR GLY ILE GLY THR PRO SER LYS SER ASP SEQRES 5 B 98 LYS PRO ALA SER THR SER GLY THR GLY PHE GLY ASP LYS SEQRES 6 B 98 PHE LYS PRO ALA ILE GLY THR TRP ASP CYS ASP THR CYS SEQRES 7 B 98 LEU VAL GLN ASN LYS PRO GLU ALA VAL LYS CYS VAL ALA SEQRES 8 B 98 CYS GLU THR PRO LYS PRO GLY SEQRES 1 C 221 GLY PRO HIS MET ALA SER ALA ALA GLN GLY GLU PRO GLN SEQRES 2 C 221 VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY THR SEQRES 3 C 221 GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY GLU SEQRES 4 C 221 SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU VAL SEQRES 5 C 221 HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE LYS SEQRES 6 C 221 PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE GLY SEQRES 7 C 221 GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA SEQRES 8 C 221 ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR LYS SEQRES 9 C 221 ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS SEQRES 10 C 221 GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP SEQRES 11 C 221 ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL PHE SEQRES 12 C 221 HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER ALA SEQRES 13 C 221 LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU SEQRES 14 C 221 ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL SEQRES 15 C 221 ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET ASP SEQRES 16 C 221 PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU VAL SEQRES 17 C 221 ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 D 98 GLY PRO LEU GLY SER ALA GLY SER SER TRP GLN CYS ASP SEQRES 2 D 98 THR CYS LEU LEU GLN ASN LYS VAL THR ASP ASN LYS CYS SEQRES 3 D 98 ILE ALA CYS GLN ALA ALA LYS LEU PRO LEU LYS GLU THR SEQRES 4 D 98 ALA LYS GLN THR GLY ILE GLY THR PRO SER LYS SER ASP SEQRES 5 D 98 LYS PRO ALA SER THR SER GLY THR GLY PHE GLY ASP LYS SEQRES 6 D 98 PHE LYS PRO ALA ILE GLY THR TRP ASP CYS ASP THR CYS SEQRES 7 D 98 LEU VAL GLN ASN LYS PRO GLU ALA VAL LYS CYS VAL ALA SEQRES 8 D 98 CYS GLU THR PRO LYS PRO GLY HET MG A 301 1 HET GDP A 302 28 HET MG A 304 1 HET MG A 306 1 HET ZN B 300 1 HET MG C 301 1 HET GDP C 302 28 HET MG C 303 1 HET MG C 305 1 HET ZN D 300 1 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 5 MG 6(MG 2+) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 9 ZN 2(ZN 2+) FORMUL 15 HOH *294(H2 O) HELIX 1 1 GLY A 22 LYS A 28 1 7 HELIX 2 2 HIS A 30 GLU A 36 1 7 HELIX 3 3 GLY A 68 PHE A 72 5 5 HELIX 4 4 ARG A 76 ILE A 81 1 6 HELIX 5 5 SER A 94 ASN A 100 1 7 HELIX 6 6 ASN A 100 GLU A 113 1 14 HELIX 7 7 LYS A 132 ILE A 136 5 5 HELIX 8 8 VAL A 137 LYS A 142 5 6 HELIX 9 9 SER A 150 ASN A 154 5 5 HELIX 10 10 PHE A 157 GLY A 170 1 14 HELIX 11 11 ASP A 190 THR A 206 1 17 HELIX 12 12 GLY C 22 LYS C 28 1 7 HELIX 13 13 HIS C 30 GLU C 36 1 7 HELIX 14 14 GLY C 68 PHE C 72 5 5 HELIX 15 15 ARG C 76 ILE C 81 1 6 HELIX 16 16 SER C 94 ASN C 100 1 7 HELIX 17 17 ASN C 100 GLU C 113 1 14 HELIX 18 18 LYS C 132 ILE C 136 5 5 HELIX 19 19 VAL C 137 LYS C 142 1 6 HELIX 20 20 SER C 150 ASN C 154 5 5 HELIX 21 21 GLU C 158 GLY C 170 1 13 HELIX 22 22 ASP C 190 GLN C 205 1 16 SHEET 1 A 7 LYS A 38 VAL A 40 0 SHEET 2 A 7 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 A 7 GLY A 57 THR A 66 -1 O PHE A 61 N LEU A 50 SHEET 4 A 7 GLN A 10 GLY A 17 1 N LEU A 13 O TRP A 64 SHEET 5 A 7 CYS A 85 ASP A 91 1 O MET A 89 N VAL A 16 SHEET 6 A 7 ILE A 117 ASN A 122 1 O CYS A 120 N ILE A 88 SHEET 7 A 7 LEU A 144 ASP A 148 1 O GLN A 145 N LEU A 119 SHEET 1 B 2 TRP B 725 ASP B 726 0 SHEET 2 B 2 GLN B 733 ASN B 734 -1 O ASN B 734 N TRP B 725 SHEET 1 C 7 LYS C 38 VAL C 40 0 SHEET 2 C 7 VAL C 45 THR C 54 -1 O VAL C 45 N VAL C 40 SHEET 3 C 7 GLY C 57 THR C 66 -1 O PHE C 61 N LEU C 50 SHEET 4 C 7 GLN C 10 GLY C 17 1 N PHE C 11 O ASN C 62 SHEET 5 C 7 CYS C 85 ASP C 91 1 O MET C 89 N VAL C 16 SHEET 6 C 7 ILE C 117 ASN C 122 1 O ASN C 122 N PHE C 90 SHEET 7 C 7 GLN C 145 ASP C 148 1 O GLN C 145 N LEU C 119 SHEET 1 D 3 LYS C 38 VAL C 40 0 SHEET 2 D 3 VAL C 45 THR C 54 -1 O VAL C 45 N VAL C 40 SHEET 3 D 3 PHE C 176 ALA C 178 -1 O VAL C 177 N HIS C 53 SHEET 1 E 2 TRP D 725 ASP D 726 0 SHEET 2 E 2 GLN D 733 ASN D 734 -1 O ASN D 734 N TRP D 725 LINK OG1 THR A 24 MG MG A 301 1555 1555 2.25 LINK O HOH A 239 MG MG A 301 1555 1555 2.35 LINK O HOH A 240 MG MG A 301 1555 1555 2.21 LINK O HOH A 241 MG MG A 301 1555 1555 2.29 LINK O HOH A 242 MG MG A 301 1555 1555 2.32 LINK MG MG A 301 O1B GDP A 302 1555 1555 2.19 LINK ZN ZN B 300 SG CYS B 727 1555 1555 2.52 LINK ZN ZN B 300 SG CYS B 730 1555 1555 2.40 LINK ZN ZN B 300 SG CYS B 741 1555 1555 2.50 LINK ZN ZN B 300 SG CYS B 744 1555 1555 2.41 LINK OG1 THR C 24 MG MG C 301 1555 1555 2.27 LINK O HOH C 235 MG MG C 301 1555 1555 2.26 LINK O HOH C 236 MG MG C 301 1555 1555 2.28 LINK O HOH C 237 MG MG C 301 1555 1555 2.35 LINK O HOH C 238 MG MG C 301 1555 1555 2.25 LINK MG MG C 301 O1B GDP C 302 1555 1555 2.11 LINK ZN ZN D 300 SG CYS D 727 1555 1555 2.43 LINK ZN ZN D 300 SG CYS D 730 1555 1555 2.28 LINK ZN ZN D 300 SG CYS D 741 1555 1555 2.24 LINK ZN ZN D 300 SG CYS D 744 1555 1555 2.32 SITE 1 AC1 6 THR A 24 HOH A 239 HOH A 240 HOH A 241 SITE 2 AC1 6 HOH A 242 GDP A 302 SITE 1 AC2 20 GLY A 20 THR A 21 GLY A 22 LYS A 23 SITE 2 AC2 20 THR A 24 THR A 25 ASN A 122 LYS A 123 SITE 3 AC2 20 ASP A 125 ILE A 126 SER A 150 ALA A 151 SITE 4 AC2 20 LYS A 152 HOH A 219 HOH A 239 HOH A 241 SITE 5 AC2 20 HOH A 299 MG A 301 HOH A 310 HOH A 344 SITE 1 AC3 3 LEU A 31 HOH A 279 MG C 303 SITE 1 AC4 4 PRO A 180 ALA A 181 HOH A 221 MG C 305 SITE 1 AC5 4 CYS B 727 CYS B 730 CYS B 741 CYS B 744 SITE 1 AC6 6 THR C 24 HOH C 235 HOH C 236 HOH C 237 SITE 2 AC6 6 HOH C 238 GDP C 302 SITE 1 AC7 23 GLY C 20 THR C 21 GLY C 22 LYS C 23 SITE 2 AC7 23 THR C 24 THR C 25 ASN C 122 LYS C 123 SITE 3 AC7 23 ASP C 125 ILE C 126 SER C 150 ALA C 151 SITE 4 AC7 23 LYS C 152 HOH C 235 HOH C 238 HOH C 275 SITE 5 AC7 23 HOH C 300 MG C 301 HOH C 351 HOH C 362 SITE 6 AC7 23 HOH C 392 HOH C 394 HOH C 395 SITE 1 AC8 4 MG A 304 HIS C 53 PRO C 58 HOH C 358 SITE 1 AC9 3 MG A 306 ALA C 181 HOH C 244 SITE 1 BC1 4 CYS D 727 CYS D 730 CYS D 741 CYS D 744 CRYST1 58.523 61.129 80.215 90.00 93.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017087 0.000000 0.001108 0.00000 SCALE2 0.000000 0.016359 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012493 0.00000 MASTER 534 0 10 22 21 0 21 6 0 0 0 50 END