HEADER TRANSPORT PROTEIN 07-MAR-09 3GJ4 TITLE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF3 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: GTPASE RAN, RAS-RELATED NUCLEAR PROTEIN, RAS-LIKE PROTEIN COMPND 5 TC4, ANDROGEN RECEPTOR-ASSOCIATED PROTEIN 24; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: NUP153 - ZINC FINGER MODULE 3: UNP RESIDUES 790-817; COMPND 11 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24, OK/SW-CL.81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: NUP153; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS G PROTEIN, GDP, RAN, NUP153, NUCLEAR PORE, ZINC FINGER, ACETYLATION, KEYWDS 2 CYTOPLASM, GTP-BINDING, HOST-VIRUS INTERACTION, ISOPEPTIDE BOND, KEYWDS 3 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, PROTEIN KEYWDS 4 TRANSPORT, TRANSPORT, UBL CONJUGATION, DNA-BINDING, METAL-BINDING, KEYWDS 5 MRNA TRANSPORT, NUCLEAR PORE COMPLEX, TRANSLOCATION, ZINC, ZINC- KEYWDS 6 FINGER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.PARTRIDGE,T.U.SCHWARTZ REVDAT 2 20-OCT-21 3GJ4 1 REMARK SEQADV LINK REVDAT 1 04-AUG-09 3GJ4 0 JRNL AUTH J.R.PARTRIDGE,T.U.SCHWARTZ JRNL TITL CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING JRNL TITL 2 ZINC FINGER DOMAIN. JRNL REF J.MOL.BIOL. V. 391 375 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19505478 JRNL DOI 10.1016/J.JMB.2009.06.011 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 29468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4764 - 4.7722 0.91 2511 134 0.1942 0.2368 REMARK 3 2 4.7722 - 3.7885 0.92 2470 147 0.1627 0.1917 REMARK 3 3 3.7885 - 3.3098 0.95 2540 142 0.1768 0.2393 REMARK 3 4 3.3098 - 3.0072 0.96 2542 158 0.1991 0.2660 REMARK 3 5 3.0072 - 2.7917 0.97 2554 143 0.2206 0.2663 REMARK 3 6 2.7917 - 2.6271 0.97 2613 115 0.2197 0.3045 REMARK 3 7 2.6271 - 2.4956 0.97 2570 138 0.2247 0.2773 REMARK 3 8 2.4956 - 2.3870 0.98 2641 132 0.2374 0.3307 REMARK 3 9 2.3870 - 2.2951 0.97 2569 144 0.2551 0.3276 REMARK 3 10 2.2951 - 2.2159 0.95 2549 110 0.2698 0.3569 REMARK 3 11 2.2159 - 2.1500 0.91 2423 123 0.2858 0.3622 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 36.23 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.680 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3735 REMARK 3 ANGLE : 1.018 5072 REMARK 3 CHIRALITY : 0.064 560 REMARK 3 PLANARITY : 0.004 638 REMARK 3 DIHEDRAL : 15.712 1362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 49.7000 -4.5109 -3.6253 REMARK 3 T TENSOR REMARK 3 T11: 0.5477 T22: 0.0548 REMARK 3 T33: 0.2630 T12: 0.0277 REMARK 3 T13: -0.2483 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.5898 L22: -0.1386 REMARK 3 L33: 0.5577 L12: -0.2379 REMARK 3 L13: 0.0328 L23: 0.1060 REMARK 3 S TENSOR REMARK 3 S11: -0.1450 S12: -0.0354 S13: 0.2180 REMARK 3 S21: 0.1433 S22: -0.0218 S23: -0.2464 REMARK 3 S31: -0.2831 S32: -0.0159 S33: 0.1490 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 18-20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.78350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 GLY B 785 REMARK 465 PRO B 786 REMARK 465 LEU B 787 REMARK 465 GLY B 788 REMARK 465 SER B 789 REMARK 465 VAL B 790 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 HIS C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 SER C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 GLN C 4 REMARK 465 GLY C 5 REMARK 465 GLU C 6 REMARK 465 PRO C 7 REMARK 465 ALA C 208 REMARK 465 LEU C 209 REMARK 465 PRO C 210 REMARK 465 ASP C 211 REMARK 465 GLU C 212 REMARK 465 ASP C 213 REMARK 465 ASP C 214 REMARK 465 ASP C 215 REMARK 465 LEU C 216 REMARK 465 GLY D 785 REMARK 465 PRO D 786 REMARK 465 LEU D 787 REMARK 465 GLY D 788 REMARK 465 SER D 789 REMARK 465 VAL D 790 REMARK 465 GLY D 791 REMARK 465 PRO D 817 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 113 -150.18 70.02 REMARK 500 ASN A 114 67.33 -68.34 REMARK 500 ASN A 143 2.25 92.81 REMARK 500 CYS B 799 2.92 82.46 REMARK 500 VAL C 137 -15.69 -145.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 HOH A 218 O 177.7 REMARK 620 3 HOH A 219 O 91.7 90.1 REMARK 620 4 HOH A 220 O 86.1 92.1 177.8 REMARK 620 5 HOH A 221 O 91.2 87.5 85.4 95.2 REMARK 620 6 GDP A 302 O1B 83.5 97.6 98.7 80.5 173.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 795 SG REMARK 620 2 CYS B 798 SG 121.4 REMARK 620 3 CYS B 809 SG 107.4 105.9 REMARK 620 4 CYS B 812 SG 97.2 119.3 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 24 OG1 REMARK 620 2 HOH C 217 O 162.5 REMARK 620 3 HOH C 219 O 82.7 81.1 REMARK 620 4 HOH C 221 O 94.1 91.9 87.3 REMARK 620 5 GDP C 302 O1B 83.5 89.3 88.4 175.3 REMARK 620 6 HOH C 313 O 94.3 99.7 165.6 107.0 77.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 795 SG REMARK 620 2 CYS D 798 SG 116.8 REMARK 620 3 CYS D 809 SG 107.3 103.6 REMARK 620 4 CYS D 812 SG 98.5 117.6 112.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CH5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RANGDP-NUP153ZNF2 COMPLEX REMARK 900 RELATED ID: 2GQE RELATED DB: PDB REMARK 900 MOLECULAR CHARACTERIZATION OF THE RAN BINDING ZINC FINGER DOMAIN REMARK 900 RELATED ID: 1BYU RELATED DB: PDB REMARK 900 CANINE GDP-RAN REMARK 900 RELATED ID: 3GJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN REMARK 900 RELATED ID: 3GJ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN IN COMPLEX WITH NUP153 - REMARK 900 ZINC FINGER MODULE 2 REMARK 900 RELATED ID: 3GJ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 4 REMARK 900 RELATED ID: 3GJ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 1 REMARK 900 RELATED ID: 3GJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 12 REMARK 900 RELATED ID: 3GJ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 34 DBREF 3GJ4 A 2 216 UNP P62826 RAN_HUMAN 2 216 DBREF 3GJ4 B 790 817 UNP P49791 NU153_RAT 790 817 DBREF 3GJ4 C 2 216 UNP P62826 RAN_HUMAN 2 216 DBREF 3GJ4 D 790 817 UNP P49791 NU153_RAT 790 817 SEQADV 3GJ4 GLY A -4 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 PRO A -3 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 HIS A -2 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 MET A -1 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 ALA A 0 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 SER A 1 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 SER A 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 3GJ4 GLY B 785 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 PRO B 786 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 LEU B 787 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 GLY B 788 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 SER B 789 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 GLY C -4 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 PRO C -3 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 HIS C -2 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 MET C -1 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 ALA C 0 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 SER C 1 UNP P62826 EXPRESSION TAG SEQADV 3GJ4 SER C 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 3GJ4 GLY D 785 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 PRO D 786 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 LEU D 787 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 GLY D 788 UNP P49791 EXPRESSION TAG SEQADV 3GJ4 SER D 789 UNP P49791 EXPRESSION TAG SEQRES 1 A 221 GLY PRO HIS MET ALA SER ALA ALA GLN GLY GLU PRO GLN SEQRES 2 A 221 VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY THR SEQRES 3 A 221 GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY GLU SEQRES 4 A 221 SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU VAL SEQRES 5 A 221 HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE LYS SEQRES 6 A 221 PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE GLY SEQRES 7 A 221 GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA SEQRES 8 A 221 ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR LYS SEQRES 9 A 221 ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS SEQRES 10 A 221 GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP SEQRES 11 A 221 ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL PHE SEQRES 12 A 221 HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER ALA SEQRES 13 A 221 LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU SEQRES 14 A 221 ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL SEQRES 15 A 221 ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET ASP SEQRES 16 A 221 PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU VAL SEQRES 17 A 221 ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 B 33 GLY PRO LEU GLY SER VAL GLY SER TRP GLU CYS PRO VAL SEQRES 2 B 33 CYS CYS VAL SER ASN LYS ALA GLU ASP SER ARG CYS VAL SEQRES 3 B 33 SER CYS THR SER GLU LYS PRO SEQRES 1 C 221 GLY PRO HIS MET ALA SER ALA ALA GLN GLY GLU PRO GLN SEQRES 2 C 221 VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY THR SEQRES 3 C 221 GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY GLU SEQRES 4 C 221 SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU VAL SEQRES 5 C 221 HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE LYS SEQRES 6 C 221 PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE GLY SEQRES 7 C 221 GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA SEQRES 8 C 221 ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR LYS SEQRES 9 C 221 ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS SEQRES 10 C 221 GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP SEQRES 11 C 221 ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL PHE SEQRES 12 C 221 HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER ALA SEQRES 13 C 221 LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU SEQRES 14 C 221 ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL SEQRES 15 C 221 ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET ASP SEQRES 16 C 221 PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU VAL SEQRES 17 C 221 ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 D 33 GLY PRO LEU GLY SER VAL GLY SER TRP GLU CYS PRO VAL SEQRES 2 D 33 CYS CYS VAL SER ASN LYS ALA GLU ASP SER ARG CYS VAL SEQRES 3 D 33 SER CYS THR SER GLU LYS PRO HET MG A 301 1 HET GDP A 302 28 HET ZN B 300 1 HET MG C 301 1 HET GDP C 302 28 HET ZN D 300 1 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 5 MG 2(MG 2+) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 ZN 2(ZN 2+) FORMUL 11 HOH *206(H2 O) HELIX 1 1 GLY A 22 LYS A 28 1 7 HELIX 2 2 HIS A 30 GLU A 36 1 7 HELIX 3 3 ALA A 41 LEU A 43 5 3 HELIX 4 4 GLY A 68 PHE A 72 5 5 HELIX 5 5 ARG A 76 ILE A 81 1 6 HELIX 6 6 SER A 94 ASN A 100 1 7 HELIX 7 7 ASN A 100 GLU A 113 1 14 HELIX 8 8 LYS A 132 ILE A 136 5 5 HELIX 9 9 VAL A 137 ASN A 143 1 7 HELIX 10 10 GLU A 158 GLY A 170 1 13 HELIX 11 11 ASP A 190 THR A 206 1 17 HELIX 12 12 GLY C 22 LYS C 28 1 7 HELIX 13 13 HIS C 30 GLU C 36 1 7 HELIX 14 14 GLY C 68 GLY C 73 5 6 HELIX 15 15 ARG C 76 ILE C 81 1 6 HELIX 16 16 SER C 94 ASN C 100 1 7 HELIX 17 17 ASN C 100 CYS C 112 1 13 HELIX 18 18 LYS C 132 ILE C 136 5 5 HELIX 19 19 VAL C 137 LYS C 141 5 5 HELIX 20 20 GLU C 158 GLY C 170 1 13 HELIX 21 21 ASP C 190 THR C 207 1 18 SHEET 1 A 7 LYS A 38 VAL A 40 0 SHEET 2 A 7 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 A 7 GLY A 57 THR A 66 -1 O PHE A 61 N LEU A 50 SHEET 4 A 7 GLN A 10 VAL A 16 1 N LEU A 13 O ASN A 62 SHEET 5 A 7 CYS A 85 ASP A 91 1 O MET A 89 N VAL A 16 SHEET 6 A 7 ILE A 117 ASN A 122 1 O CYS A 120 N ILE A 88 SHEET 7 A 7 GLN A 145 ASP A 148 1 O GLN A 145 N LEU A 119 SHEET 1 B 3 LYS A 38 VAL A 40 0 SHEET 2 B 3 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 B 3 PHE A 176 ALA A 178 -1 O VAL A 177 N HIS A 53 SHEET 1 C 2 TRP B 793 GLU B 794 0 SHEET 2 C 2 SER B 801 ASN B 802 -1 O ASN B 802 N TRP B 793 SHEET 1 D 7 LYS C 38 VAL C 40 0 SHEET 2 D 7 VAL C 45 THR C 54 -1 O VAL C 45 N VAL C 40 SHEET 3 D 7 GLY C 57 THR C 66 -1 O VAL C 63 N HIS C 48 SHEET 4 D 7 VAL C 9 VAL C 16 1 N LEU C 13 O ASN C 62 SHEET 5 D 7 CYS C 85 ASP C 91 1 O MET C 89 N VAL C 16 SHEET 6 D 7 ILE C 117 ASN C 122 1 O CYS C 120 N ILE C 88 SHEET 7 D 7 GLN C 145 ASP C 148 1 O GLN C 145 N LEU C 119 SHEET 1 E 3 LYS C 38 VAL C 40 0 SHEET 2 E 3 VAL C 45 THR C 54 -1 O VAL C 45 N VAL C 40 SHEET 3 E 3 PHE C 176 ALA C 178 -1 O VAL C 177 N HIS C 53 SHEET 1 F 2 TRP D 793 GLU D 794 0 SHEET 2 F 2 SER D 801 ASN D 802 -1 O ASN D 802 N TRP D 793 LINK OG1 THR A 24 MG MG A 301 1555 1555 2.33 LINK O HOH A 218 MG MG A 301 1555 1555 2.41 LINK O HOH A 219 MG MG A 301 1555 1555 2.13 LINK O HOH A 220 MG MG A 301 1555 1555 2.23 LINK O HOH A 221 MG MG A 301 1555 1555 2.28 LINK MG MG A 301 O1B GDP A 302 1555 1555 2.32 LINK ZN ZN B 300 SG CYS B 795 1555 1555 2.56 LINK ZN ZN B 300 SG CYS B 798 1555 1555 2.45 LINK ZN ZN B 300 SG CYS B 809 1555 1555 2.51 LINK ZN ZN B 300 SG CYS B 812 1555 1555 2.45 LINK OG1 THR C 24 MG MG C 301 1555 1555 2.37 LINK O HOH C 217 MG MG C 301 1555 1555 2.32 LINK O HOH C 219 MG MG C 301 1555 1555 2.37 LINK O HOH C 221 MG MG C 301 1555 1555 2.26 LINK MG MG C 301 O1B GDP C 302 1555 1555 2.40 LINK MG MG C 301 O HOH C 313 1555 1555 2.16 LINK ZN ZN D 300 SG CYS D 795 1555 1555 2.50 LINK ZN ZN D 300 SG CYS D 798 1555 1555 2.34 LINK ZN ZN D 300 SG CYS D 809 1555 1555 2.34 LINK ZN ZN D 300 SG CYS D 812 1555 1555 2.44 SITE 1 AC1 6 THR A 24 HOH A 218 HOH A 219 HOH A 220 SITE 2 AC1 6 HOH A 221 GDP A 302 SITE 1 AC2 18 GLY A 20 THR A 21 GLY A 22 LYS A 23 SITE 2 AC2 18 THR A 24 THR A 25 GLU A 70 ASN A 122 SITE 3 AC2 18 LYS A 123 ASP A 125 ILE A 126 SER A 150 SITE 4 AC2 18 ALA A 151 LYS A 152 HOH A 218 HOH A 220 SITE 5 AC2 18 HOH A 243 MG A 301 SITE 1 AC3 4 CYS B 795 CYS B 798 CYS B 809 CYS B 812 SITE 1 AC4 6 THR C 24 HOH C 217 HOH C 219 HOH C 221 SITE 2 AC4 6 GDP C 302 HOH C 313 SITE 1 AC5 17 GLY C 20 THR C 21 GLY C 22 LYS C 23 SITE 2 AC5 17 THR C 24 THR C 25 ASN C 122 LYS C 123 SITE 3 AC5 17 ASP C 125 ILE C 126 SER C 150 ALA C 151 SITE 4 AC5 17 LYS C 152 HOH C 217 HOH C 233 MG C 301 SITE 5 AC5 17 HOH C 313 SITE 1 AC6 4 CYS D 795 CYS D 798 CYS D 809 CYS D 812 CRYST1 68.422 61.567 72.062 90.00 110.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014615 0.000000 0.005322 0.00000 SCALE2 0.000000 0.016242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014768 0.00000 MASTER 389 0 6 21 24 0 16 6 0 0 0 40 END