HEADER UNKNOWN FUNCTION 06-MAR-09 3GIW TITLE CRYSTAL STRUCTURE OF A DUF574 FAMILY PROTEIN (SAV_2177) FROM TITLE 2 STREPTOMYCES AVERMITILIS MA-4680 AT 1.45 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN OF UNKNOWN FUNCTION DUF574; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 227882; SOURCE 4 STRAIN: MA-4680; SOURCE 5 GENE: NP_823353.1, SAV2177, SAV_2177; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ROSSMANN-FOLD PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 24-JUL-19 3GIW 1 REMARK LINK REVDAT 4 01-NOV-17 3GIW 1 REMARK REVDAT 3 13-JUL-11 3GIW 1 VERSN REVDAT 2 28-JUL-10 3GIW 1 HEADER TITLE KEYWDS REVDAT 1 14-APR-09 3GIW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ROSSMANN-FOLD PROTEIN OF UNKNOWN JRNL TITL 2 FUNCTION (DUF574) (NP_823353.1) FROM STREPTOMYCES JRNL TITL 3 AVERMITILIS MA-4680 AT 1.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 50239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2551 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3214 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2023 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.909 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2207 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1496 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3026 ; 1.511 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3641 ; 1.003 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 5.860 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;33.735 ;23.019 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;11.960 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.108 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2520 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 451 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 469 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1637 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1059 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1080 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 211 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.102 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 1.249 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 539 ; 0.307 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2227 ; 1.815 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 898 ; 1.719 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 785 ; 2.498 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7045 2.7946 15.1233 REMARK 3 T TENSOR REMARK 3 T11: -0.0285 T22: -0.0225 REMARK 3 T33: -0.0485 T12: 0.0001 REMARK 3 T13: 0.0053 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.8190 L22: 1.2003 REMARK 3 L33: 0.2864 L12: 0.1055 REMARK 3 L13: 0.1548 L23: -0.0841 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0213 S13: 0.0474 REMARK 3 S21: -0.0118 S22: -0.0006 S23: -0.0593 REMARK 3 S31: -0.0115 S32: 0.0085 S33: 0.0173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. AN REMARK 3 UNIDENTIFIED LIGAND (UNL) WHICH LOOKS LIKE PHENYLALANINE OR A REMARK 3 SIMILAR MOLECULE HAS BEEN MODELED IN THE PUTATIVE ACTIVE SITE. REMARK 3 5. GLYCEROL (GOL) FROM THE CRYOPROTECTANT HAS BEEN MODELED IN REMARK 3 THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 3GIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97927 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 27.186 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 4.063 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M NA CITRATE, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.85800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.83450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.85800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.83450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 290 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 314 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 ASN A 9 REMARK 465 GLY A 10 REMARK 465 TRP A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 ASP A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CD CE NZ REMARK 470 ASP A 259 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 174 O HOH A 460 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 139 SE MSE A 139 CE -0.523 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 263 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 72.01 46.54 REMARK 500 ILE A 168 -34.90 -135.25 REMARK 500 ASP A 177 73.35 57.25 REMARK 500 ALA A 205 67.77 -153.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 381519 RELATED DB: TARGETDB REMARK 900 RELATED ID: 3GO4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ROSSMANN-FOLD PROTEIN OF UNKNOWN FUNCTION REMARK 900 (DUF574) (NP_823353.1) FROM STREPTOMYCES AVERMITILIS MA-4680 AT REMARK 900 1.80 A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GIW A 1 276 UNP Q82L35 Q82L35_STRAW 1 276 SEQADV 3GIW GLY A 0 UNP Q82L35 LEADER SEQUENCE SEQRES 1 A 277 GLY MSE GLY GLY ALA ALA LEU PRO ASP ASN GLY TRP PRO SEQRES 2 A 277 ALA ASP ARG ILE ASP THR GLU SER ALA HIS SER ALA ARG SEQRES 3 A 277 ILE TYR ASP TYR ILE ILE GLY GLY LYS ASP TYR TYR PRO SEQRES 4 A 277 ALA ASP LYS GLU ALA GLY ASP ALA MSE SER ARG GLU TRP SEQRES 5 A 277 PRO ALA LEU PRO VAL HIS MSE ARG ALA ASN ARG ASP TRP SEQRES 6 A 277 MSE ASN ARG ALA VAL ALA HIS LEU ALA LYS GLU ALA GLY SEQRES 7 A 277 ILE ARG GLN PHE LEU ASP ILE GLY THR GLY ILE PRO THR SEQRES 8 A 277 SER PRO ASN LEU HIS GLU ILE ALA GLN SER VAL ALA PRO SEQRES 9 A 277 GLU SER ARG VAL VAL TYR VAL ASP ASN ASP PRO ILE VAL SEQRES 10 A 277 LEU THR LEU SER GLN GLY LEU LEU ALA SER THR PRO GLU SEQRES 11 A 277 GLY ARG THR ALA TYR VAL GLU ALA ASP MSE LEU ASP PRO SEQRES 12 A 277 ALA SER ILE LEU ASP ALA PRO GLU LEU ARG ASP THR LEU SEQRES 13 A 277 ASP LEU THR ARG PRO VAL ALA LEU THR VAL ILE ALA ILE SEQRES 14 A 277 VAL HIS PHE VAL LEU ASP GLU ASP ASP ALA VAL GLY ILE SEQRES 15 A 277 VAL ARG ARG LEU LEU GLU PRO LEU PRO SER GLY SER TYR SEQRES 16 A 277 LEU ALA MSE SER ILE GLY THR ALA GLU PHE ALA PRO GLN SEQRES 17 A 277 GLU VAL GLY ARG VAL ALA ARG GLU TYR ALA ALA ARG ASN SEQRES 18 A 277 MSE PRO MSE ARG LEU ARG THR HIS ALA GLU ALA GLU GLU SEQRES 19 A 277 PHE PHE GLU GLY LEU GLU LEU VAL GLU PRO GLY ILE VAL SEQRES 20 A 277 GLN VAL HIS LYS TRP HIS PRO ASP ALA ALA THR ALA ASP SEQRES 21 A 277 GLY ILE ARG ASP GLU ASP ILE ALA MSE TYR GLY ALA VAL SEQRES 22 A 277 ALA ARG LYS PRO MODRES 3GIW MSE A 47 MET SELENOMETHIONINE MODRES 3GIW MSE A 58 MET SELENOMETHIONINE MODRES 3GIW MSE A 65 MET SELENOMETHIONINE MODRES 3GIW MSE A 139 MET SELENOMETHIONINE MODRES 3GIW MSE A 197 MET SELENOMETHIONINE MODRES 3GIW MSE A 221 MET SELENOMETHIONINE MODRES 3GIW MSE A 223 MET SELENOMETHIONINE MODRES 3GIW MSE A 268 MET SELENOMETHIONINE HET MSE A 47 8 HET MSE A 58 13 HET MSE A 65 16 HET MSE A 139 8 HET MSE A 197 8 HET MSE A 221 8 HET MSE A 223 13 HET MSE A 268 8 HET UNL A 277 12 HET GOL A 278 6 HET GOL A 279 6 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *299(H2 O) HELIX 1 1 HIS A 22 ILE A 31 1 10 HELIX 2 2 TYR A 37 TRP A 51 1 15 HELIX 3 3 ALA A 53 GLU A 75 1 23 HELIX 4 4 ASN A 93 ALA A 102 1 10 HELIX 5 5 ASP A 113 LEU A 119 1 7 HELIX 6 6 SER A 120 ALA A 125 1 6 HELIX 7 7 ASP A 141 ASP A 147 1 7 HELIX 8 8 ALA A 148 ASP A 153 1 6 HELIX 9 9 ILE A 168 VAL A 172 5 5 HELIX 10 10 LEU A 173 ASP A 176 5 4 HELIX 11 11 ASP A 177 GLU A 187 1 11 HELIX 12 12 ALA A 205 ARG A 219 1 15 HELIX 13 13 THR A 227 PHE A 234 1 8 HELIX 14 14 HIS A 249 TRP A 251 5 3 HELIX 15 15 ARG A 262 ILE A 266 5 5 SHEET 1 A 7 ARG A 131 GLU A 136 0 SHEET 2 A 7 ARG A 106 ASP A 111 1 N TYR A 109 O ALA A 133 SHEET 3 A 7 GLN A 80 ILE A 84 1 N ASP A 83 O VAL A 108 SHEET 4 A 7 ALA A 162 ILE A 166 1 O THR A 164 N ILE A 84 SHEET 5 A 7 TYR A 194 GLY A 200 1 O TYR A 194 N LEU A 163 SHEET 6 A 7 MSE A 268 ARG A 274 -1 O TYR A 269 N ILE A 199 SHEET 7 A 7 GLU A 239 LEU A 240 -1 N GLU A 239 O ARG A 274 SHEET 1 B 7 ARG A 131 GLU A 136 0 SHEET 2 B 7 ARG A 106 ASP A 111 1 N TYR A 109 O ALA A 133 SHEET 3 B 7 GLN A 80 ILE A 84 1 N ASP A 83 O VAL A 108 SHEET 4 B 7 ALA A 162 ILE A 166 1 O THR A 164 N ILE A 84 SHEET 5 B 7 TYR A 194 GLY A 200 1 O TYR A 194 N LEU A 163 SHEET 6 B 7 MSE A 268 ARG A 274 -1 O TYR A 269 N ILE A 199 SHEET 7 B 7 VAL A 246 GLN A 247 -1 N VAL A 246 O GLY A 270 LINK C ALA A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N SER A 48 1555 1555 1.34 LINK C HIS A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N ARG A 59 1555 1555 1.33 LINK C TRP A 64 N AMSE A 65 1555 1555 1.33 LINK C TRP A 64 N BMSE A 65 1555 1555 1.33 LINK C AMSE A 65 N ASN A 66 1555 1555 1.33 LINK C BMSE A 65 N ASN A 66 1555 1555 1.33 LINK C ASP A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N LEU A 140 1555 1555 1.33 LINK C ALA A 196 N MSE A 197 1555 1555 1.32 LINK C MSE A 197 N SER A 198 1555 1555 1.33 LINK C ASN A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N PRO A 222 1555 1555 1.35 LINK C PRO A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N ARG A 224 1555 1555 1.32 LINK C ALA A 267 N MSE A 268 1555 1555 1.34 LINK C MSE A 268 N TYR A 269 1555 1555 1.32 CISPEP 1 SER A 91 PRO A 92 0 -5.65 CISPEP 2 GLU A 242 PRO A 243 0 9.34 SITE 1 AC1 10 TYR A 27 HIS A 57 MSE A 58 ALA A 167 SITE 2 AC1 10 HIS A 170 TYR A 216 MSE A 223 MSE A 268 SITE 3 AC1 10 HOH A 316 HOH A 432 SITE 1 AC2 8 VAL A 110 ASP A 111 ASN A 112 ALA A 137 SITE 2 AC2 8 ASP A 138 MSE A 139 ILE A 168 HOH A 446 SITE 1 AC3 5 ARG A 59 ARG A 62 ASP A 63 ASN A 66 SITE 2 AC3 5 HOH A 456 CRYST1 129.716 49.669 45.132 90.00 94.72 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007709 0.000000 0.000636 0.00000 SCALE2 0.000000 0.020133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022233 0.00000 MASTER 398 0 11 15 14 0 7 6 0 0 0 22 END