HEADER CELL ADHESION 25-FEB-09 3GEA TITLE DONOR STRAND COMPLEMENTED FAEG MONOMER OF F4 VARIANT AD COMPND MOL_ID: 1; COMPND 2 MOLECULE: K88 FIMBRIAL PROTEIN AD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FAEGNTD/DSC, K88 PILIN, K88 ANTIGEN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: C1360-79; SOURCE 5 GENE: FAEG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEXP96 KEYWDS IMMUNOGLOBULIN LIKE FOLD, FIMBRIUM, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR I.VAN MOLLE,K.MOONENS,A.GARCIA-PINO,L.BUTS,J.BOUCKAERT,H.DE GREVE REVDAT 4 09-AUG-17 3GEA 1 SOURCE REMARK REVDAT 3 29-JAN-14 3GEA 1 JRNL REVDAT 2 13-JUL-11 3GEA 1 VERSN REVDAT 1 20-OCT-09 3GEA 0 JRNL AUTH I.VAN MOLLE,K.MOONENS,A.GARCIA-PINO,L.BUTS,M.DE KERPEL, JRNL AUTH 2 L.WYNS,J.BOUCKAERT,H.DE GREVE JRNL TITL STRUCTURAL AND THERMODYNAMIC CHARACTERIZATION OF PRE- AND JRNL TITL 2 POSTPOLYMERIZATION STATES IN THE F4 FIMBRIAL SUBUNIT FAEG JRNL REF J.MOL.BIOL. V. 394 957 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19799915 JRNL DOI 10.1016/J.JMB.2009.09.059 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 93547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6819 - 5.2681 1.00 3127 186 0.1908 0.2184 REMARK 3 2 5.2681 - 4.1856 1.00 3024 173 0.1445 0.1705 REMARK 3 3 4.1856 - 3.6578 1.00 3006 150 0.1468 0.1528 REMARK 3 4 3.6578 - 3.3239 1.00 3013 156 0.1466 0.1648 REMARK 3 5 3.3239 - 3.0859 1.00 2956 187 0.1607 0.1860 REMARK 3 6 3.0859 - 2.9042 1.00 2955 163 0.1526 0.1722 REMARK 3 7 2.9042 - 2.7588 1.00 2994 147 0.1603 0.1684 REMARK 3 8 2.7588 - 2.6388 1.00 2976 157 0.1562 0.1751 REMARK 3 9 2.6388 - 2.5373 1.00 2966 141 0.1522 0.1689 REMARK 3 10 2.5373 - 2.4498 1.00 2953 159 0.1527 0.1864 REMARK 3 11 2.4498 - 2.3732 1.00 2995 129 0.1516 0.1905 REMARK 3 12 2.3732 - 2.3054 1.00 2955 147 0.1493 0.1597 REMARK 3 13 2.3054 - 2.2448 1.00 2999 136 0.1408 0.1807 REMARK 3 14 2.2448 - 2.1900 1.00 2987 136 0.1378 0.1714 REMARK 3 15 2.1900 - 2.1403 1.00 2940 168 0.1355 0.1567 REMARK 3 16 2.1403 - 2.0947 1.00 2903 170 0.1364 0.1594 REMARK 3 17 2.0947 - 2.0528 1.00 2970 159 0.1414 0.1562 REMARK 3 18 2.0528 - 2.0141 1.00 2954 150 0.1418 0.1485 REMARK 3 19 2.0141 - 1.9781 1.00 2941 167 0.1392 0.1660 REMARK 3 20 1.9781 - 1.9446 1.00 2950 141 0.1399 0.1813 REMARK 3 21 1.9446 - 1.9133 1.00 2929 156 0.1471 0.1840 REMARK 3 22 1.9133 - 1.8838 1.00 2931 157 0.1480 0.1786 REMARK 3 23 1.8838 - 1.8561 1.00 2946 174 0.1514 0.1760 REMARK 3 24 1.8561 - 1.8300 1.00 2963 153 0.1632 0.1759 REMARK 3 25 1.8300 - 1.8053 1.00 2927 144 0.1623 0.2028 REMARK 3 26 1.8053 - 1.7818 1.00 2912 158 0.1634 0.1953 REMARK 3 27 1.7818 - 1.7595 1.00 2925 167 0.1715 0.2095 REMARK 3 28 1.7595 - 1.7384 1.00 2971 141 0.1783 0.2101 REMARK 3 29 1.7384 - 1.7181 1.00 2903 165 0.1869 0.2120 REMARK 3 30 1.7181 - 1.6988 0.98 2885 154 0.2049 0.2328 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 46.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10600 REMARK 3 B22 (A**2) : 0.10600 REMARK 3 B33 (A**2) : -0.21200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.031 4002 REMARK 3 ANGLE : 2.537 5438 REMARK 3 CHIRALITY : 0.237 620 REMARK 3 PLANARITY : 0.013 703 REMARK 3 DIHEDRAL : 17.465 1335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 57.5559 22.8809 14.9631 REMARK 3 T TENSOR REMARK 3 T11: 0.0548 T22: 0.0345 REMARK 3 T33: 0.0218 T12: -0.0036 REMARK 3 T13: -0.0103 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.1668 L22: 0.4860 REMARK 3 L33: 0.5800 L12: 0.0680 REMARK 3 L13: 0.0276 L23: 0.0992 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.0310 S13: -0.0052 REMARK 3 S21: -0.0486 S22: 0.0057 S23: -0.0115 REMARK 3 S31: -0.0140 S32: -0.0051 S33: -0.0049 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 46.3660 -13.8912 10.8373 REMARK 3 T TENSOR REMARK 3 T11: 0.0726 T22: 0.0616 REMARK 3 T33: 0.1982 T12: -0.0091 REMARK 3 T13: 0.0057 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.8517 L22: 1.8503 REMARK 3 L33: 0.6461 L12: -0.9561 REMARK 3 L13: -0.0537 L23: -0.3070 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: -0.0758 S13: -0.2769 REMARK 3 S21: 0.0031 S22: 0.1152 S23: 0.4588 REMARK 3 S31: 0.0220 S32: -0.1109 S33: -0.0288 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93586 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.699 REMARK 200 RESOLUTION RANGE LOW (A) : 28.677 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : 0.69800 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2J6G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULPHATE, 0.1M TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.96200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.92400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.92400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.96200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 ARG B 11 REMARK 465 GLN B 12 REMARK 465 ALA B 59 REMARK 465 THR B 60 REMARK 465 PRO B 61 REMARK 465 VAL B 62 REMARK 465 THR B 63 REMARK 465 SER B 64 REMARK 465 ASN B 255 REMARK 465 LYS B 256 REMARK 465 ALA B 274 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 6 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 MET B 2 SD REMARK 470 HIS B 5 O REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 LYS B 17 NZ REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 LYS B 55 CD CE NZ REMARK 470 GLU B 56 CD OE1 OE2 REMARK 470 PHE B 58 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 VAL B 128 CG1 CG2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 188 CG1 CG2 REMARK 470 GLN B 234 CD OE1 NE2 REMARK 470 GLN B 257 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 547 O HOH A 876 1.54 REMARK 500 O HOH B 416 O HOH B 619 1.81 REMARK 500 O HOH B 812 O HOH B 824 1.87 REMARK 500 O HOH A 285 O HOH A 700 1.93 REMARK 500 N TRP A 1 O HOH A 705 1.94 REMARK 500 O HOH A 304 O HOH A 704 2.08 REMARK 500 O HOH B 619 O HOH B 880 2.11 REMARK 500 O3 GOL B 275 O HOH B 829 2.12 REMARK 500 O HOH A 402 O HOH A 465 2.12 REMARK 500 O THR A 237 O HOH A 361 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 825 O HOH A 828 2655 1.64 REMARK 500 O HOH A 826 O HOH A 830 3664 1.76 REMARK 500 O HOH A 449 O HOH A 662 3664 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 15 CB GLU A 15 CG -0.179 REMARK 500 GLU A 56 CG GLU A 56 CD 0.103 REMARK 500 PHE A 58 CE1 PHE A 58 CZ 0.121 REMARK 500 PRO A 61 CB PRO A 61 CG -0.237 REMARK 500 VAL A 62 CB VAL A 62 CG2 -0.179 REMARK 500 GLU A 83 CG GLU A 83 CD 0.096 REMARK 500 SER A 118 CB SER A 118 OG 0.089 REMARK 500 TYR A 148 CE2 TYR A 148 CD2 0.091 REMARK 500 VAL A 248 CB VAL A 248 CG2 0.140 REMARK 500 LYS B 109 CE LYS B 109 NZ 0.205 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 HIS B 5 CA - C - N ANGL. DEV. = -13.4 DEGREES REMARK 500 LEU B 32 CB - CG - CD2 ANGL. DEV. = -12.5 DEGREES REMARK 500 THR B 33 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 75.14 57.50 REMARK 500 VAL A 66 -138.27 -125.39 REMARK 500 VAL A 66 -141.42 -122.01 REMARK 500 MET A 258 7.86 58.29 REMARK 500 SER B 175 -158.56 -94.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 276 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J6G RELATED DB: PDB REMARK 900 PLANT EXPRESSED FAEG OF F4 AC 5/95 FIMBRIAE REMARK 900 RELATED ID: 2J6R RELATED DB: PDB REMARK 900 PLANT EXPRESSED FAEG OF F4 AC GIS26 FIMBRIAE REMARK 900 RELATED ID: 3F65 RELATED DB: PDB REMARK 900 STRUCTURE OF THE F4 FIMBRIAL CHAPERONE FAEE REMARK 900 RELATED ID: 3GEW RELATED DB: PDB REMARK 900 FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX FOR F4 AD FIMBRIAE REMARK 900 RELATED ID: 3GFU RELATED DB: PDB REMARK 900 FAEE-FAEG CHAPERONE-MAJOR PILIN COMPLEX FOR F4 AC 5/95 FIMBRIAE REMARK 900 RELATED ID: 3GGH RELATED DB: PDB REMARK 900 DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE REMARK 900 RELATED ID: 3HLR RELATED DB: PDB REMARK 900 DONOR STRAND COMPLEMENTED FAEG OF F4AD FIMBRIAE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICT BASED ON REFERENCE 2 OF DATABASE FAEG3_ECOLX REMARK 999 (UNIPROTKB/SWISS-PROT P14191). N27S (UNP RESIDUE 59) IS CONFLICT OF REMARK 999 FAEG3_ECOLX. DBREF 3GEA A 1 4 UNP P14191 FAEG3_ECOLX 22 25 DBREF 3GEA A 11 253 UNP P14191 FAEG3_ECOLX 43 285 DBREF 3GEA A 258 274 UNP P14191 FAEG3_ECOLX 23 39 DBREF 3GEA B 1 4 UNP P14191 FAEG3_ECOLX 22 25 DBREF 3GEA B 11 253 UNP P14191 FAEG3_ECOLX 43 285 DBREF 3GEA B 258 274 UNP P14191 FAEG3_ECOLX 23 39 SEQADV 3GEA HIS A 5 UNP P14191 LINKER SEQADV 3GEA HIS A 6 UNP P14191 LINKER SEQADV 3GEA HIS A 7 UNP P14191 LINKER SEQADV 3GEA HIS A 8 UNP P14191 LINKER SEQADV 3GEA HIS A 9 UNP P14191 LINKER SEQADV 3GEA HIS A 10 UNP P14191 LINKER SEQADV 3GEA SER A 27 UNP P14191 ASN 59 SEE REMARK 999 SEQADV 3GEA ASP A 254 UNP P14191 LINKER SEQADV 3GEA ASN A 255 UNP P14191 LINKER SEQADV 3GEA LYS A 256 UNP P14191 LINKER SEQADV 3GEA GLN A 257 UNP P14191 LINKER SEQADV 3GEA HIS B 5 UNP P14191 LINKER SEQADV 3GEA HIS B 6 UNP P14191 LINKER SEQADV 3GEA HIS B 7 UNP P14191 LINKER SEQADV 3GEA HIS B 8 UNP P14191 LINKER SEQADV 3GEA HIS B 9 UNP P14191 LINKER SEQADV 3GEA HIS B 10 UNP P14191 LINKER SEQADV 3GEA SER B 27 UNP P14191 ASN 59 SEE REMARK 999 SEQADV 3GEA ASP B 254 UNP P14191 LINKER SEQADV 3GEA ASN B 255 UNP P14191 LINKER SEQADV 3GEA LYS B 256 UNP P14191 LINKER SEQADV 3GEA GLN B 257 UNP P14191 LINKER SEQRES 1 A 274 TRP MET THR GLY HIS HIS HIS HIS HIS HIS ARG GLN LYS SEQRES 2 A 274 TRP GLU TRP LYS VAL GLY THR GLY LEU ASN GLY PHE GLY SEQRES 3 A 274 SER VAL LEU ASN ASP LEU THR ASN GLY GLY THR LYS LEU SEQRES 4 A 274 THR ILE THR VAL THR GLY ASN LYS PRO ILE LEU LEU GLY SEQRES 5 A 274 ARG THR LYS GLU ALA PHE ALA THR PRO VAL THR SER GLY SEQRES 6 A 274 VAL ASP GLY ILE PRO HIS ILE ALA PHE THR ASP TYR GLU SEQRES 7 A 274 GLY ALA SER VAL GLU LEU ARG ASN PRO ASP GLY GLU THR SEQRES 8 A 274 GLU LYS GLY LEU ALA TYR PHE VAL LEU PRO MET LYS ASN SEQRES 9 A 274 ALA GLU GLY THR LYS VAL GLY SER VAL LYS VAL ASN ALA SEQRES 10 A 274 SER TYR ALA GLY ALA LEU GLY ARG GLY GLY VAL THR SER SEQRES 11 A 274 ALA ASP GLY GLU LEU MET SER LEU PHE ALA GLU GLY SER SEQRES 12 A 274 HIS ALA ILE PHE TYR GLY GLY LEU PRO THR ASN VAL LYS SEQRES 13 A 274 ASN SER GLU LEU LYS GLY GLY SER ALA ALA ALA ALA ARG SEQRES 14 A 274 THR GLU LEU PHE GLY SER LEU SER LYS ASN ASP ILE LEU SEQRES 15 A 274 GLY GLN ILE GLN ARG VAL ASN ALA ASN ILE THR SER LEU SEQRES 16 A 274 VAL ASN VAL PRO GLY SER PHE ASN GLU ASN MET ALA TYR SEQRES 17 A 274 THR ASP GLY SER VAL VAL SER VAL ALA TYR ALA LEU GLY SEQRES 18 A 274 ILE ALA ASN GLY GLN THR ILE GLU ALA THR PHE ASN GLN SEQRES 19 A 274 ALA VAL THR THR SER THR GLN TRP SER ALA PRO LEU ASN SEQRES 20 A 274 VAL ALA ILE THR TYR TYR ASP ASN LYS GLN MET THR GLY SEQRES 21 A 274 ASP PHE ASN GLY SER VAL ASP ILE GLY GLY SER ILE THR SEQRES 22 A 274 ALA SEQRES 1 B 274 TRP MET THR GLY HIS HIS HIS HIS HIS HIS ARG GLN LYS SEQRES 2 B 274 TRP GLU TRP LYS VAL GLY THR GLY LEU ASN GLY PHE GLY SEQRES 3 B 274 SER VAL LEU ASN ASP LEU THR ASN GLY GLY THR LYS LEU SEQRES 4 B 274 THR ILE THR VAL THR GLY ASN LYS PRO ILE LEU LEU GLY SEQRES 5 B 274 ARG THR LYS GLU ALA PHE ALA THR PRO VAL THR SER GLY SEQRES 6 B 274 VAL ASP GLY ILE PRO HIS ILE ALA PHE THR ASP TYR GLU SEQRES 7 B 274 GLY ALA SER VAL GLU LEU ARG ASN PRO ASP GLY GLU THR SEQRES 8 B 274 GLU LYS GLY LEU ALA TYR PHE VAL LEU PRO MET LYS ASN SEQRES 9 B 274 ALA GLU GLY THR LYS VAL GLY SER VAL LYS VAL ASN ALA SEQRES 10 B 274 SER TYR ALA GLY ALA LEU GLY ARG GLY GLY VAL THR SER SEQRES 11 B 274 ALA ASP GLY GLU LEU MET SER LEU PHE ALA GLU GLY SER SEQRES 12 B 274 HIS ALA ILE PHE TYR GLY GLY LEU PRO THR ASN VAL LYS SEQRES 13 B 274 ASN SER GLU LEU LYS GLY GLY SER ALA ALA ALA ALA ARG SEQRES 14 B 274 THR GLU LEU PHE GLY SER LEU SER LYS ASN ASP ILE LEU SEQRES 15 B 274 GLY GLN ILE GLN ARG VAL ASN ALA ASN ILE THR SER LEU SEQRES 16 B 274 VAL ASN VAL PRO GLY SER PHE ASN GLU ASN MET ALA TYR SEQRES 17 B 274 THR ASP GLY SER VAL VAL SER VAL ALA TYR ALA LEU GLY SEQRES 18 B 274 ILE ALA ASN GLY GLN THR ILE GLU ALA THR PHE ASN GLN SEQRES 19 B 274 ALA VAL THR THR SER THR GLN TRP SER ALA PRO LEU ASN SEQRES 20 B 274 VAL ALA ILE THR TYR TYR ASP ASN LYS GLN MET THR GLY SEQRES 21 B 274 ASP PHE ASN GLY SER VAL ASP ILE GLY GLY SER ILE THR SEQRES 22 B 274 ALA HET SO4 A 275 5 HET SO4 A 276 5 HET SO4 A 277 5 HET GOL A 278 6 HET GOL A 279 6 HET GOL A 280 6 HET GOL B 275 6 HET GOL B 276 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 11 HOH *521(H2 O) HELIX 1 1 ASN A 30 LEU A 32 5 3 HELIX 2 2 GLY A 162 GLY A 174 1 13 HELIX 3 3 SER A 177 ASN A 189 1 13 HELIX 4 4 ASN B 30 LEU B 32 5 3 HELIX 5 5 GLY B 162 GLY B 174 1 13 HELIX 6 6 SER B 177 ASN B 189 1 13 SHEET 1 A 5 TRP A 14 VAL A 18 0 SHEET 2 A 5 LYS A 47 THR A 54 -1 O LEU A 51 N LYS A 17 SHEET 3 A 5 VAL A 213 ILE A 222 -1 O LEU A 220 N ILE A 49 SHEET 4 A 5 LYS A 109 GLY A 126 -1 N GLY A 124 O SER A 215 SHEET 5 A 5 LEU A 95 LYS A 103 -1 N PHE A 98 O VAL A 115 SHEET 1 B 5 PHE A 58 ALA A 59 0 SHEET 2 B 5 VAL A 213 ILE A 222 -1 O VAL A 214 N PHE A 58 SHEET 3 B 5 LYS A 109 GLY A 126 -1 N GLY A 124 O SER A 215 SHEET 4 B 5 THR A 227 PHE A 232 -1 O GLU A 229 N LYS A 114 SHEET 5 B 5 LYS A 38 THR A 42 -1 N ILE A 41 O ILE A 228 SHEET 1 C 4 LEU A 95 LYS A 103 0 SHEET 2 C 4 LYS A 109 GLY A 126 -1 O VAL A 115 N PHE A 98 SHEET 3 C 4 ASP A 132 PHE A 139 -1 O MET A 136 N LEU A 123 SHEET 4 C 4 PHE A 202 ASN A 203 1 O PHE A 202 N PHE A 139 SHEET 1 D 3 PHE A 202 ASN A 203 0 SHEET 2 D 3 ASP A 132 PHE A 139 1 N PHE A 139 O PHE A 202 SHEET 3 D 3 SER A 194 ASN A 197 1 O SER A 194 N GLY A 133 SHEET 1 E 8 PRO A 70 THR A 75 0 SHEET 2 E 8 THR A 240 TYR A 252 -1 O THR A 251 N HIS A 71 SHEET 3 E 8 PHE A 262 THR A 273 -1 O PHE A 262 N ILE A 250 SHEET 4 E 8 PHE A 25 VAL A 28 1 N SER A 27 O SER A 271 SHEET 5 E 8 LYS B 38 VAL B 43 1 O THR B 42 N GLY A 26 SHEET 6 E 8 THR B 227 PHE B 232 -1 O ALA B 230 N LEU B 39 SHEET 7 E 8 LYS B 109 GLY B 126 -1 N SER B 112 O THR B 231 SHEET 8 E 8 LEU B 95 LYS B 103 -1 N ALA B 96 O ALA B 117 SHEET 1 F 6 TRP B 14 VAL B 18 0 SHEET 2 F 6 LYS B 47 THR B 54 -1 O LEU B 51 N LYS B 17 SHEET 3 F 6 VAL B 213 ILE B 222 -1 O ILE B 222 N LYS B 47 SHEET 4 F 6 LYS B 109 GLY B 126 -1 N GLY B 124 O SER B 215 SHEET 5 F 6 ASP B 132 LEU B 138 -1 O MET B 136 N LEU B 123 SHEET 6 F 6 SER B 194 PHE B 202 1 O VAL B 196 N GLY B 133 SHEET 1 G 3 PHE B 25 VAL B 28 0 SHEET 2 G 3 GLY B 269 THR B 273 1 O SER B 271 N PHE B 25 SHEET 3 G 3 THR B 240 SER B 243 -1 N THR B 240 O ILE B 272 SHEET 1 H 4 SER B 81 VAL B 82 0 SHEET 2 H 4 ILE B 69 THR B 75 -1 N PHE B 74 O VAL B 82 SHEET 3 H 4 LEU B 246 TYR B 253 -1 O ASN B 247 N THR B 75 SHEET 4 H 4 GLY B 260 VAL B 266 -1 O PHE B 262 N ILE B 250 CISPEP 1 THR A 60 PRO A 61 0 -7.22 SITE 1 AC1 5 GLY A 21 LYS A 47 PRO A 48 HOH A 863 SITE 2 AC1 5 HOH A 874 SITE 1 AC2 7 ARG A 125 GLY A 127 VAL A 128 THR A 129 SITE 2 AC2 7 SER A 130 HOH A 856 HOH A 858 SITE 1 AC3 6 SER A 164 LYS A 178 ASN A 197 HOH A 497 SITE 2 AC3 6 HOH B 854 HOH B 884 SITE 1 AC4 8 PHE A 139 ASN A 157 GLU A 159 HOH A 315 SITE 2 AC4 8 HOH A 464 HOH A 865 GLU B 78 LYS B 109 SITE 1 AC5 6 THR A 40 HOH A 833 HOH A 871 THR B 44 SITE 2 AC5 6 GLY B 45 GOL B 275 SITE 1 AC6 3 THR A 33 ASN A 34 GLY A 35 SITE 1 AC7 5 GOL A 279 GLY B 45 ASN B 46 LEU B 172 SITE 2 AC7 5 HOH B 829 SITE 1 AC8 3 ASN B 34 GLY B 35 HOH B 410 CRYST1 123.965 123.965 95.886 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008067 0.004657 0.000000 0.00000 SCALE2 0.000000 0.009315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010429 0.00000 MASTER 481 0 8 6 38 0 14 6 0 0 0 44 END