HEADER OXIDOREDUCTASE 24-FEB-09 3GDG TITLE CRYSTAL STRUCTURE OF THE NADP-DEPENDENT MANNITOL DEHYDROGENASE FROM TITLE 2 CLADOSPORIUM HERBARUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE NADP-DEPENDENT MANNITOL DEHYDROGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MTDH, MANNITOL 2-DEHYDROGENASE [NADP+]; COMPND 5 EC: 1.1.1.138; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLADOSPORIUM HERBARUM; SOURCE 3 ORGANISM_TAXID: 29918; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS-PARALLEL2 KEYWDS ROSSMANN FOLD, BETA-ALPHA-BETA MOTIFS, OPEN TWISTED SHEET, ALLERGEN, KEYWDS 2 NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NUESS,P.GOETTIG,I.MAGLER,U.DENK,M.BREITENBACH,P.B.SCHNEIDER, AUTHOR 2 H.BRANDSTETTER,B.SIMON-NOBBE REVDAT 3 16-NOV-11 3GDG 1 VERSN HETATM REVDAT 2 04-AUG-10 3GDG 1 JRNL REVDAT 1 09-JUN-10 3GDG 0 JRNL AUTH D.NUSS,P.GOETTIG,I.MAGLER,U.DENK,M.BREITENBACH, JRNL AUTH 2 P.B.SCHNEIDER,H.BRANDSTETTER,B.SIMON-NOBBE JRNL TITL CRYSTAL STRUCTURE OF THE NADP-DEPENDENT MANNITOL JRNL TITL 2 DEHYDROGENASE FROM CLADOSPORIUM HERBARUM: IMPLICATIONS FOR JRNL TITL 3 OLIGOMERISATION AND CATALYSIS. JRNL REF BIOCHIMIE V. 92 985 2010 JRNL REFN ISSN 0300-9084 JRNL PMID 20420880 JRNL DOI 10.1016/J.BIOCHI.2010.04.012 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2508202.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 41670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2078 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6577 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 319 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 695 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.48000 REMARK 3 B22 (A**2) : 5.99000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.38 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.88 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.740 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.220 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.820 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.230 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 86.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3GDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-09. REMARK 100 THE RCSB ID CODE IS RCSB051722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41671 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.14100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1EDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% MPD, 0.1 M HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.35350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.04450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.35350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.04450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 481 LIES ON A SPECIAL POSITION. REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 MET A 1 REMARK 475 PRO A 2 REMARK 475 GLY A 210 REMARK 475 MET B 1 REMARK 475 PRO B 2 REMARK 475 MET C 1 REMARK 475 PRO C 2 REMARK 475 MET D 1 REMARK 475 PRO D 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 8 CG CD CE NZ REMARK 480 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 58 CB CG CD OE1 NE2 REMARK 480 LYS A 65 CB CG CD CE NZ REMARK 480 LYS A 69 CB CG CD CE NZ REMARK 480 LYS A 74 CB CG CD CE NZ REMARK 480 LYS A 79 CD CE NZ REMARK 480 LYS A 93 CB CG CD CE NZ REMARK 480 LYS A 148 CE NZ REMARK 480 PHE A 214 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS A 217 CB CG CD CE NZ REMARK 480 GLU A 218 CB CG CD OE1 OE2 REMARK 480 LYS B 19 NZ REMARK 480 LYS B 65 CB CG CD CE NZ REMARK 480 ILE B 73 CG2 REMARK 480 LYS B 74 CB CG CD CE NZ REMARK 480 ASP B 132 OD1 REMARK 480 PHE B 214 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS B 217 CB CG CD CE NZ REMARK 480 GLN B 221 CB CG CD OE1 NE2 REMARK 480 LYS C 19 CB CG CD CE NZ REMARK 480 LYS C 32 CD CE NZ REMARK 480 ARG C 56 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS C 69 CD CE NZ REMARK 480 LYS C 90 CD CE NZ REMARK 480 LYS C 217 CG CD CE NZ REMARK 480 GLU C 218 CG CD OE1 OE2 REMARK 480 GLN C 221 CB CG CD OE1 NE2 REMARK 480 ARG D 56 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS D 65 CG CD CE NZ REMARK 480 LYS D 74 CE NZ REMARK 480 LYS D 93 CB CG CD CE NZ REMARK 480 ASP D 132 OD1 REMARK 480 LEU D 211 CB CG CD1 CD2 REMARK 480 PHE D 214 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 VAL D 215 CB CG1 CG2 REMARK 480 LYS D 217 CB CG CD CE NZ REMARK 480 GLN D 220 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 195 O HOH C 492 2.15 REMARK 500 O LEU A 118 O HOH A 296 2.19 REMARK 500 O HOH B 288 O HOH B 313 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 28 45.94 -107.35 REMARK 500 ARG A 56 86.88 35.71 REMARK 500 ALA A 57 90.88 -63.62 REMARK 500 GLN A 58 -87.73 -125.57 REMARK 500 LYS A 76 139.59 -178.80 REMARK 500 ASP A 83 1.37 -67.83 REMARK 500 LEU A 133 -63.03 -101.32 REMARK 500 ALA A 159 -113.46 -86.04 REMARK 500 SER A 160 151.69 164.68 REMARK 500 GLN A 172 50.89 -154.57 REMARK 500 LEU A 211 26.16 -147.66 REMARK 500 SER A 250 49.16 -146.04 REMARK 500 PRO B 2 88.88 -53.93 REMARK 500 ALA B 28 37.93 37.48 REMARK 500 SER B 55 -35.11 -133.58 REMARK 500 SER B 115 -175.17 -179.19 REMARK 500 ALA B 159 -122.73 -107.03 REMARK 500 SER B 160 157.03 177.45 REMARK 500 GLN B 172 51.61 -147.66 REMARK 500 ARG B 194 -16.46 -47.13 REMARK 500 PHE B 196 -23.35 -145.59 REMARK 500 PHE B 214 26.09 -68.93 REMARK 500 SER B 250 37.60 -141.35 REMARK 500 PRO C 2 -146.07 -70.35 REMARK 500 SER C 29 -10.11 -172.08 REMARK 500 SER C 55 169.30 158.64 REMARK 500 ARG C 56 68.25 72.85 REMARK 500 LEU C 133 -70.85 -85.62 REMARK 500 ALA C 159 -123.81 -91.38 REMARK 500 SER C 160 155.92 177.80 REMARK 500 GLN C 172 51.03 -148.82 REMARK 500 PHE C 196 -23.84 -146.73 REMARK 500 ASP C 208 80.27 -66.07 REMARK 500 LEU C 211 32.77 -142.38 REMARK 500 ASP C 248 5.87 -68.90 REMARK 500 PRO D 2 91.50 -56.74 REMARK 500 ALA D 28 61.88 -110.92 REMARK 500 SER D 55 -27.37 -151.38 REMARK 500 ARG D 56 65.67 -67.22 REMARK 500 ASP D 114 -2.57 76.90 REMARK 500 ALA D 159 -116.91 -84.96 REMARK 500 SER D 160 146.02 170.83 REMARK 500 GLN D 172 47.29 -147.66 REMARK 500 ALA D 197 149.57 -171.85 REMARK 500 ASP D 213 -162.69 39.25 REMARK 500 PRO D 216 150.90 -42.48 REMARK 500 SER D 247 -165.25 -101.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 280 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH A 321 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 595 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH A 616 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A 633 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 641 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 679 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH B 388 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH B 602 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH B 639 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH B 643 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH C 329 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH C 373 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH C 405 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH C 465 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH C 612 DISTANCE = 11.44 ANGSTROMS REMARK 525 HOH C 617 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH C 687 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH D 287 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH D 360 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH D 366 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH D 657 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH D 680 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG C 267 O REMARK 620 2 ARG B 267 O 158.0 REMARK 620 3 HOH B 317 O 114.0 85.4 REMARK 620 4 HOH B 327 O 113.9 74.6 89.6 REMARK 620 5 HOH B 298 O 90.1 68.5 151.4 94.4 REMARK 620 6 HOH B 296 O 98.7 72.4 83.0 146.6 78.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 267 O REMARK 620 2 ARG D 267 O 166.8 REMARK 620 3 ARG A 267 OXT 43.9 135.7 REMARK 620 4 HOH A 419 O 99.1 86.7 58.0 REMARK 620 5 HOH D 668 O 88.7 80.9 117.1 152.2 REMARK 620 6 HOH D 269 O 96.4 72.9 74.3 78.6 74.0 REMARK 620 7 HOH A 304 O 88.3 98.9 121.3 120.9 85.7 159.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GDF RELATED DB: PDB DBREF 3GDG A 1 267 UNP P0C0Y5 MTDH_CLAHE 1 267 DBREF 3GDG B 1 267 UNP P0C0Y5 MTDH_CLAHE 1 267 DBREF 3GDG C 1 267 UNP P0C0Y5 MTDH_CLAHE 1 267 DBREF 3GDG D 1 267 UNP P0C0Y5 MTDH_CLAHE 1 267 SEQRES 1 A 267 MET PRO GLY GLN GLN ALA THR LYS HIS GLU SER LEU LEU SEQRES 2 A 267 ASP GLN LEU SER LEU LYS GLY LYS VAL VAL VAL VAL THR SEQRES 3 A 267 GLY ALA SER GLY PRO LYS GLY MET GLY ILE GLU ALA ALA SEQRES 4 A 267 ARG GLY CYS ALA GLU MET GLY ALA ALA VAL ALA ILE THR SEQRES 5 A 267 TYR ALA SER ARG ALA GLN GLY ALA GLU GLU ASN VAL LYS SEQRES 6 A 267 GLU LEU GLU LYS THR TYR GLY ILE LYS ALA LYS ALA TYR SEQRES 7 A 267 LYS CYS GLN VAL ASP SER TYR GLU SER CYS GLU LYS LEU SEQRES 8 A 267 VAL LYS ASP VAL VAL ALA ASP PHE GLY GLN ILE ASP ALA SEQRES 9 A 267 PHE ILE ALA ASN ALA GLY ALA THR ALA ASP SER GLY ILE SEQRES 10 A 267 LEU ASP GLY SER VAL GLU ALA TRP ASN HIS VAL VAL GLN SEQRES 11 A 267 VAL ASP LEU ASN GLY THR PHE HIS CYS ALA LYS ALA VAL SEQRES 12 A 267 GLY HIS HIS PHE LYS GLU ARG GLY THR GLY SER LEU VAL SEQRES 13 A 267 ILE THR ALA SER MET SER GLY HIS ILE ALA ASN PHE PRO SEQRES 14 A 267 GLN GLU GLN THR SER TYR ASN VAL ALA LYS ALA GLY CYS SEQRES 15 A 267 ILE HIS MET ALA ARG SER LEU ALA ASN GLU TRP ARG ASP SEQRES 16 A 267 PHE ALA ARG VAL ASN SER ILE SER PRO GLY TYR ILE ASP SEQRES 17 A 267 THR GLY LEU SER ASP PHE VAL PRO LYS GLU THR GLN GLN SEQRES 18 A 267 LEU TRP HIS SER MET ILE PRO MET GLY ARG ASP GLY LEU SEQRES 19 A 267 ALA LYS GLU LEU LYS GLY ALA TYR VAL TYR PHE ALA SER SEQRES 20 A 267 ASP ALA SER THR TYR THR THR GLY ALA ASP LEU LEU ILE SEQRES 21 A 267 ASP GLY GLY TYR THR THR ARG SEQRES 1 B 267 MET PRO GLY GLN GLN ALA THR LYS HIS GLU SER LEU LEU SEQRES 2 B 267 ASP GLN LEU SER LEU LYS GLY LYS VAL VAL VAL VAL THR SEQRES 3 B 267 GLY ALA SER GLY PRO LYS GLY MET GLY ILE GLU ALA ALA SEQRES 4 B 267 ARG GLY CYS ALA GLU MET GLY ALA ALA VAL ALA ILE THR SEQRES 5 B 267 TYR ALA SER ARG ALA GLN GLY ALA GLU GLU ASN VAL LYS SEQRES 6 B 267 GLU LEU GLU LYS THR TYR GLY ILE LYS ALA LYS ALA TYR SEQRES 7 B 267 LYS CYS GLN VAL ASP SER TYR GLU SER CYS GLU LYS LEU SEQRES 8 B 267 VAL LYS ASP VAL VAL ALA ASP PHE GLY GLN ILE ASP ALA SEQRES 9 B 267 PHE ILE ALA ASN ALA GLY ALA THR ALA ASP SER GLY ILE SEQRES 10 B 267 LEU ASP GLY SER VAL GLU ALA TRP ASN HIS VAL VAL GLN SEQRES 11 B 267 VAL ASP LEU ASN GLY THR PHE HIS CYS ALA LYS ALA VAL SEQRES 12 B 267 GLY HIS HIS PHE LYS GLU ARG GLY THR GLY SER LEU VAL SEQRES 13 B 267 ILE THR ALA SER MET SER GLY HIS ILE ALA ASN PHE PRO SEQRES 14 B 267 GLN GLU GLN THR SER TYR ASN VAL ALA LYS ALA GLY CYS SEQRES 15 B 267 ILE HIS MET ALA ARG SER LEU ALA ASN GLU TRP ARG ASP SEQRES 16 B 267 PHE ALA ARG VAL ASN SER ILE SER PRO GLY TYR ILE ASP SEQRES 17 B 267 THR GLY LEU SER ASP PHE VAL PRO LYS GLU THR GLN GLN SEQRES 18 B 267 LEU TRP HIS SER MET ILE PRO MET GLY ARG ASP GLY LEU SEQRES 19 B 267 ALA LYS GLU LEU LYS GLY ALA TYR VAL TYR PHE ALA SER SEQRES 20 B 267 ASP ALA SER THR TYR THR THR GLY ALA ASP LEU LEU ILE SEQRES 21 B 267 ASP GLY GLY TYR THR THR ARG SEQRES 1 C 267 MET PRO GLY GLN GLN ALA THR LYS HIS GLU SER LEU LEU SEQRES 2 C 267 ASP GLN LEU SER LEU LYS GLY LYS VAL VAL VAL VAL THR SEQRES 3 C 267 GLY ALA SER GLY PRO LYS GLY MET GLY ILE GLU ALA ALA SEQRES 4 C 267 ARG GLY CYS ALA GLU MET GLY ALA ALA VAL ALA ILE THR SEQRES 5 C 267 TYR ALA SER ARG ALA GLN GLY ALA GLU GLU ASN VAL LYS SEQRES 6 C 267 GLU LEU GLU LYS THR TYR GLY ILE LYS ALA LYS ALA TYR SEQRES 7 C 267 LYS CYS GLN VAL ASP SER TYR GLU SER CYS GLU LYS LEU SEQRES 8 C 267 VAL LYS ASP VAL VAL ALA ASP PHE GLY GLN ILE ASP ALA SEQRES 9 C 267 PHE ILE ALA ASN ALA GLY ALA THR ALA ASP SER GLY ILE SEQRES 10 C 267 LEU ASP GLY SER VAL GLU ALA TRP ASN HIS VAL VAL GLN SEQRES 11 C 267 VAL ASP LEU ASN GLY THR PHE HIS CYS ALA LYS ALA VAL SEQRES 12 C 267 GLY HIS HIS PHE LYS GLU ARG GLY THR GLY SER LEU VAL SEQRES 13 C 267 ILE THR ALA SER MET SER GLY HIS ILE ALA ASN PHE PRO SEQRES 14 C 267 GLN GLU GLN THR SER TYR ASN VAL ALA LYS ALA GLY CYS SEQRES 15 C 267 ILE HIS MET ALA ARG SER LEU ALA ASN GLU TRP ARG ASP SEQRES 16 C 267 PHE ALA ARG VAL ASN SER ILE SER PRO GLY TYR ILE ASP SEQRES 17 C 267 THR GLY LEU SER ASP PHE VAL PRO LYS GLU THR GLN GLN SEQRES 18 C 267 LEU TRP HIS SER MET ILE PRO MET GLY ARG ASP GLY LEU SEQRES 19 C 267 ALA LYS GLU LEU LYS GLY ALA TYR VAL TYR PHE ALA SER SEQRES 20 C 267 ASP ALA SER THR TYR THR THR GLY ALA ASP LEU LEU ILE SEQRES 21 C 267 ASP GLY GLY TYR THR THR ARG SEQRES 1 D 267 MET PRO GLY GLN GLN ALA THR LYS HIS GLU SER LEU LEU SEQRES 2 D 267 ASP GLN LEU SER LEU LYS GLY LYS VAL VAL VAL VAL THR SEQRES 3 D 267 GLY ALA SER GLY PRO LYS GLY MET GLY ILE GLU ALA ALA SEQRES 4 D 267 ARG GLY CYS ALA GLU MET GLY ALA ALA VAL ALA ILE THR SEQRES 5 D 267 TYR ALA SER ARG ALA GLN GLY ALA GLU GLU ASN VAL LYS SEQRES 6 D 267 GLU LEU GLU LYS THR TYR GLY ILE LYS ALA LYS ALA TYR SEQRES 7 D 267 LYS CYS GLN VAL ASP SER TYR GLU SER CYS GLU LYS LEU SEQRES 8 D 267 VAL LYS ASP VAL VAL ALA ASP PHE GLY GLN ILE ASP ALA SEQRES 9 D 267 PHE ILE ALA ASN ALA GLY ALA THR ALA ASP SER GLY ILE SEQRES 10 D 267 LEU ASP GLY SER VAL GLU ALA TRP ASN HIS VAL VAL GLN SEQRES 11 D 267 VAL ASP LEU ASN GLY THR PHE HIS CYS ALA LYS ALA VAL SEQRES 12 D 267 GLY HIS HIS PHE LYS GLU ARG GLY THR GLY SER LEU VAL SEQRES 13 D 267 ILE THR ALA SER MET SER GLY HIS ILE ALA ASN PHE PRO SEQRES 14 D 267 GLN GLU GLN THR SER TYR ASN VAL ALA LYS ALA GLY CYS SEQRES 15 D 267 ILE HIS MET ALA ARG SER LEU ALA ASN GLU TRP ARG ASP SEQRES 16 D 267 PHE ALA ARG VAL ASN SER ILE SER PRO GLY TYR ILE ASP SEQRES 17 D 267 THR GLY LEU SER ASP PHE VAL PRO LYS GLU THR GLN GLN SEQRES 18 D 267 LEU TRP HIS SER MET ILE PRO MET GLY ARG ASP GLY LEU SEQRES 19 D 267 ALA LYS GLU LEU LYS GLY ALA TYR VAL TYR PHE ALA SER SEQRES 20 D 267 ASP ALA SER THR TYR THR THR GLY ALA ASP LEU LEU ILE SEQRES 21 D 267 ASP GLY GLY TYR THR THR ARG HET NA A1002 1 HET NA B1001 1 HETNAM NA SODIUM ION FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *695(H2 O) HELIX 1 1 SER A 11 SER A 17 1 7 HELIX 2 2 GLY A 33 MET A 45 1 13 HELIX 3 3 GLN A 58 GLY A 72 1 15 HELIX 4 4 SER A 84 PHE A 99 1 16 HELIX 5 5 SER A 121 LEU A 133 1 13 HELIX 6 6 LEU A 133 GLY A 151 1 19 HELIX 7 7 SER A 160 HIS A 164 5 5 HELIX 8 8 GLN A 172 TRP A 193 1 22 HELIX 9 9 LEU A 211 VAL A 215 5 5 HELIX 10 10 PRO A 216 SER A 225 1 10 HELIX 11 11 ALA A 235 SER A 247 1 13 HELIX 12 12 GLY A 263 ARG A 267 5 5 HELIX 13 13 SER B 11 SER B 17 1 7 HELIX 14 14 GLY B 33 MET B 45 1 13 HELIX 15 15 ALA B 57 GLY B 72 1 16 HELIX 16 16 SER B 84 GLY B 100 1 17 HELIX 17 17 SER B 121 LEU B 133 1 13 HELIX 18 18 LEU B 133 GLY B 151 1 19 HELIX 19 19 SER B 160 HIS B 164 5 5 HELIX 20 20 GLN B 172 TRP B 193 1 22 HELIX 21 21 LEU B 211 VAL B 215 5 5 HELIX 22 22 PRO B 216 SER B 225 1 10 HELIX 23 23 LEU B 238 SER B 247 1 10 HELIX 24 24 GLY B 263 ARG B 267 5 5 HELIX 25 25 SER C 11 SER C 17 1 7 HELIX 26 26 GLY C 33 MET C 45 1 13 HELIX 27 27 ARG C 56 GLY C 72 1 17 HELIX 28 28 SER C 84 GLY C 100 1 17 HELIX 29 29 SER C 121 LEU C 133 1 13 HELIX 30 30 LEU C 133 GLY C 151 1 19 HELIX 31 31 SER C 160 HIS C 164 5 5 HELIX 32 32 GLN C 172 TRP C 193 1 22 HELIX 33 33 PRO C 216 SER C 225 1 10 HELIX 34 34 LEU C 234 GLU C 237 5 4 HELIX 35 35 LEU C 238 SER C 247 1 10 HELIX 36 36 ASP C 248 THR C 251 5 4 HELIX 37 37 GLY C 263 ARG C 267 5 5 HELIX 38 38 SER D 11 SER D 17 1 7 HELIX 39 39 GLY D 33 MET D 45 1 13 HELIX 40 40 ARG D 56 GLY D 72 1 17 HELIX 41 41 SER D 84 GLY D 100 1 17 HELIX 42 42 SER D 121 LEU D 133 1 13 HELIX 43 43 LEU D 133 GLY D 151 1 19 HELIX 44 44 SER D 160 HIS D 164 5 5 HELIX 45 45 GLN D 172 TRP D 193 1 22 HELIX 46 46 PRO D 216 SER D 225 1 10 HELIX 47 47 LEU D 238 SER D 247 1 10 HELIX 48 48 ASP D 248 THR D 251 5 4 HELIX 49 49 GLY D 263 ARG D 267 5 5 SHEET 1 A 7 ALA A 75 LYS A 76 0 SHEET 2 A 7 ALA A 48 ILE A 51 1 N ILE A 51 O LYS A 76 SHEET 3 A 7 VAL A 22 VAL A 25 1 N VAL A 25 O ALA A 50 SHEET 4 A 7 ALA A 104 ALA A 107 1 O ILE A 106 N VAL A 24 SHEET 5 A 7 SER A 154 THR A 158 1 O THR A 158 N ALA A 107 SHEET 6 A 7 ARG A 198 PRO A 204 1 O ASN A 200 N ILE A 157 SHEET 7 A 7 ASP A 257 ILE A 260 1 O LEU A 258 N SER A 203 SHEET 1 B 2 ILE A 207 ASP A 208 0 SHEET 2 B 2 GLY A 233 LEU A 234 1 O GLY A 233 N ASP A 208 SHEET 1 C 7 ALA B 75 LYS B 79 0 SHEET 2 C 7 ALA B 48 TYR B 53 1 N ILE B 51 O LYS B 76 SHEET 3 C 7 VAL B 22 VAL B 25 1 N VAL B 23 O ALA B 50 SHEET 4 C 7 ALA B 104 ALA B 107 1 O ILE B 106 N VAL B 24 SHEET 5 C 7 SER B 154 THR B 158 1 O VAL B 156 N PHE B 105 SHEET 6 C 7 ARG B 198 PRO B 204 1 O ARG B 198 N LEU B 155 SHEET 7 C 7 ASP B 257 ILE B 260 1 O ILE B 260 N SER B 203 SHEET 1 D 2 ILE B 207 ASP B 208 0 SHEET 2 D 2 GLY B 233 LEU B 234 1 O GLY B 233 N ASP B 208 SHEET 1 E 7 ALA C 75 LYS C 79 0 SHEET 2 E 7 ALA C 48 TYR C 53 1 N ILE C 51 O LYS C 76 SHEET 3 E 7 VAL C 22 VAL C 25 1 N VAL C 25 O ALA C 50 SHEET 4 E 7 ALA C 104 ALA C 107 1 O ILE C 106 N VAL C 24 SHEET 5 E 7 SER C 154 THR C 158 1 O VAL C 156 N PHE C 105 SHEET 6 E 7 ARG C 198 PRO C 204 1 O ARG C 198 N LEU C 155 SHEET 7 E 7 ASP C 257 ILE C 260 1 O LEU C 258 N SER C 201 SHEET 1 F 7 ALA D 75 LYS D 79 0 SHEET 2 F 7 ALA D 48 TYR D 53 1 N ILE D 51 O TYR D 78 SHEET 3 F 7 VAL D 22 VAL D 25 1 N VAL D 23 O ALA D 48 SHEET 4 F 7 ALA D 104 ALA D 107 1 O ILE D 106 N VAL D 24 SHEET 5 F 7 SER D 154 THR D 158 1 O VAL D 156 N PHE D 105 SHEET 6 F 7 ARG D 198 PRO D 204 1 O ASN D 200 N ILE D 157 SHEET 7 F 7 ASP D 257 ILE D 260 1 O LEU D 258 N SER D 203 SHEET 1 G 2 ILE D 207 ASP D 208 0 SHEET 2 G 2 GLY D 233 LEU D 234 1 O GLY D 233 N ASP D 208 LINK O ARG C 267 NA NA B1001 1555 1555 1.96 LINK O ARG A 267 NA NA A1002 1555 1555 2.13 LINK O ARG D 267 NA NA A1002 1555 1555 2.29 LINK O ARG B 267 NA NA B1001 1555 1555 2.31 LINK OXT ARG A 267 NA NA A1002 1555 1555 3.17 LINK NA NA A1002 O HOH A 419 1555 1555 2.11 LINK NA NA B1001 O HOH B 317 1555 1555 2.17 LINK NA NA A1002 O HOH D 668 1555 1555 2.20 LINK NA NA B1001 O HOH B 327 1555 1555 2.33 LINK NA NA A1002 O HOH D 269 1555 1555 2.33 LINK NA NA A1002 O HOH A 304 1555 1555 2.38 LINK NA NA B1001 O HOH B 298 1555 1555 2.52 LINK NA NA B1001 O HOH B 296 1555 1555 2.59 CISPEP 1 MET A 1 PRO A 2 0 0.09 CISPEP 2 PHE A 168 PRO A 169 0 -0.67 CISPEP 3 PHE B 168 PRO B 169 0 -0.21 CISPEP 4 PHE C 168 PRO C 169 0 0.11 CISPEP 5 PHE D 168 PRO D 169 0 -0.01 SITE 1 AC1 6 ARG A 267 HOH A 304 HOH A 419 ARG D 267 SITE 2 AC1 6 HOH D 269 HOH D 668 SITE 1 AC2 6 ARG B 267 HOH B 296 HOH B 298 HOH B 317 SITE 2 AC2 6 HOH B 327 ARG C 267 CRYST1 82.707 112.089 107.292 90.00 98.28 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012091 0.000000 0.001760 0.00000 SCALE2 0.000000 0.008921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009419 0.00000 MASTER 440 0 2 49 34 0 4 6 0 0 0 84 END