HEADER DNA 19-FEB-09 3GBI TITLE THE RATIONAL DESIGN AND STRUCTURAL ANALYSIS OF A SELF-ASSEMBLED THREE- TITLE 2 DIMENSIONAL DNA CRYSTAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: SYMMETRICALLY- AND SEQUENTIALLY REPEATING UNIT OF A COMPND 11 CIRCULAR DNA MOLECULES, SEE REMARK 400 FOR DETAILS.; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3'); COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: LAST 6 RESIDUES OF A DNA MOLECULE USED IN EXPERIMENT, SEE COMPND 17 REMARK 400 FOR DETAILS.; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 21 CHAIN: D; COMPND 22 FRAGMENT: FIRST 8 RESIDUES OF A DNA MOLECULE USED IN EXPERIMENT, SEE COMPND 23 REMARK 400 FOR DETAILS.; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DNA STRANDS WERE SYNTHESIZED BY STANDARD SOURCE 4 PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SOURCE 5 SYNTHESIZER USING TRITYL-ON MODE.; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 OTHER_DETAILS: DNA STRANDS WERE SYNTHESIZED BY STANDARD SOURCE 9 PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SOURCE 10 SYNTHESIZER USING TRITYL-ON; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: DNA STRANDS WERE SYNTHESIZED BY STANDARD SOURCE 14 PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SOURCE 15 SYNTHESIZER USING TRITYL-ON; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 OTHER_DETAILS: DNA STRANDS WERE SYNTHESIZED BY STANDARD SOURCE 19 PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA SOURCE 20 SYNTHESIZER USING TRITYL-ON KEYWDS NANOTECHNOLOGY, DNA CRYSTALS, DNA CROSSOVER, DESIGNED CRYSTAL KEYWDS 2 LATTICE, DNA EXPDTA X-RAY DIFFRACTION AUTHOR J.J.BIRKTOFT,J.ZHENG,N.C.SEEMAN REVDAT 3 01-NOV-17 3GBI 1 REMARK REVDAT 2 22-SEP-09 3GBI 1 JRNL REVDAT 1 01-SEP-09 3GBI 0 JRNL AUTH J.ZHENG,J.J.BIRKTOFT,Y.CHEN,T.WANG,R.SHA,P.E.CONSTANTINOU, JRNL AUTH 2 S.L.GINELL,C.MAO,N.C.SEEMAN JRNL TITL FROM MOLECULAR TO MACROSCOPIC VIA THE RATIONAL DESIGN OF A JRNL TITL 2 SELF-ASSEMBLED 3D DNA CRYSTAL. JRNL REF NATURE V. 461 74 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19727196 JRNL DOI 10.1038/NATURE08274 REMARK 2 REMARK 2 RESOLUTION. 4.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.1 REMARK 3 NUMBER OF REFLECTIONS : 2022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 4.0180 0.61 1819 203 0.2400 0.3090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.09 REMARK 3 B_SOL : 20.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.830 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 199.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 63.25200 REMARK 3 B22 (A**2) : 63.25200 REMARK 3 B33 (A**2) : 227.85100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1052 REMARK 3 ANGLE : 1.364 1465 REMARK 3 CHIRALITY : 0.058 166 REMARK 3 PLANARITY : 0.002 42 REMARK 3 DIHEDRAL : 31.823 406 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN REALITY ALL 3211 MEASURED REMARK 3 REFLECTIONS WERE USED IN THE REFINEMENT (USING PHENIX). OF THESE REMARK 3 ONLY 2022 HAD FOBS/SIGMA_FOBS >/= 0.140. REMARK 4 REMARK 4 3GBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3211 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.010 REMARK 200 RESOLUTION RANGE LOW (A) : 17.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GROWN BY VAPOR DIFFUSION WHILE TREATED REMARK 280 WITH A CONTROLLED TEMPERATURE GRADIENT FROM 333 DEGS TO 293 REMARK 280 DEGS., PH 8.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.58050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.93472 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.04800 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.58050 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.93472 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.04800 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.58050 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.93472 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.04800 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.86943 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 62.09600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.86943 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 62.09600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.86943 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.09600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE CRYSTAL IS AN INFINITE NETWORK MADE REMARK 300 FROM THREE DNA STRANDS THAT SELF-ASSOCIATE. IN THE CURRENT ENTRY REMARK 300 THE ASYMMETRIC UNIT IS COMPRISED OF 4 CHAINS, 3 OF WHICH ARE REMARK 300 FRAGMENTS OF LONGER DNA STRANDS. APPLYING THE SPACE GROUP H3 REMARK 300 SYMMETRY OPERATORS (X, Y, Z,), (-Y, X-Y, Z), AND (-X+Y,-X,Z) TO THE REMARK 300 CONTENTS OF THE ASYMMETRIC UNIT GENERATES ONE TRIMERIC UNIT OF THE REMARK 300 SELF-ASSOCIATED DNA NETWORK. ADDITIONAL DETAILS ABOUT THE CHEMICAL REMARK 300 COMPOSITION AND ASSOCIATION ARE INCLUDED IN REMARK 400. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE STRUCTURE UNIT IS GENERATED FROM 7 DNA STRANDS WHICH FORM REMARK 400 A NETWORK UNIT WITH INTERNAL 3-FOLD SYMMETRY. EXTENDING OF THE REMARK 400 STRUCTURE UNIT IN 3-D SPACE RESULTS THE CRYSTAL AT R3 SPACE REMARK 400 GROUP (REPRESENTED AS H3). THE DNA SEQUENCES OF THE 7 STRANDS REMARK 400 ARE: REMARK 400 (#1) 3 STRANDS REMARK 400 5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP REMARK 400 *CP*A)-3' REMARK 400 REMARK 400 (#2) 1 STRAND REMARK 400 5'-D(*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP* REMARK 400 CP*G)-3' REMARK 400 REMARK 400 (#3) 3 STRANDS REMARK 400 5'-D(*TP*CP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*GP*C)-3' REMARK 400 REMARK 400 THE ASYMMETRIC UNIT IS COMPRISED OF ONE FULL #1 STRAND (CHAIN A), REMARK 400 7-RESIDUE REPEATING UNIT OF #2 STRAND (CHAIN B) AND TWO FRAGMENTS REMARK 400 OF #3 STRAND (CHAINS C AND D). REMARK 400 REMARK 400 THE #2 STRAND SELF-ASSOICATES TO FORM A CIRCULAR DNA MOLECULE REMARK 400 WITH INTERNAL 3-FOLD SYMMETRY. IT HAS 3 SYMMETRIC AND SEQUENTIAL REMARK 400 REPEATING UNITS. CHAIN B IN THE ASYMMETRIC UNIT REPRESENTS ONE REMARK 400 OF THESE REPEATING UNITS. REMARK 400 REMARK 400 CHAINS D (FIRST 8 RESIDUES OF STRAND #3) AND C (NEXT 6 RESIDUES REMARK 400 OF STRAND #3) TOGETHER FORM THE THIRD DNA STRAND (#3) OF THE REMARK 400 EXPERIMENT. THIS DNA STRAND SPANS TWO ASYMMETRIC UNITS - HENCE IT REMARK 400 WAS DIVIDED INTO THE CURRENT CHAINS C AND D FOR CONVENIENT REMARK 400 REPRESENTATION. CHAIN C (1_555) IS COVALENTLY LINKED TO REMARK 400 CHAIN D OF ANOTHER ASYMMETRIC UNIT (3_555); AND CHAIN D (1_555) REMARK 400 IS COVALENTLY LINKED TO CHAIN C OF ANOTHER ASYMMETRIC UNIT REMARK 400 (2_555). REMARK 400 REMARK 400 THE SELECTION OF RESIDUES FROM THE DNA #2 AND #3 REMARK 400 ARE DICTATED BY THEIR PROXIMITY (BASE PAIRING) TO CHAIN A. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 106 C5 DT D 106 C7 0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 102 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG A 103 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA A 105 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA A 105 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC A 107 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC A 107 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 107 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT A 111 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA A 116 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC A 117 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA A 118 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DT A 119 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA A 121 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DA A 121 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA B 123 C3' - C2' - C1' ANGL. DEV. = -6.9 DEGREES REMARK 500 DA B 123 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 210 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 211 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG C 213 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC D 102 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 103 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG D 104 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DA D 105 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT D 106 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT D 106 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT D 106 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT D 108 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 3GBI A 101 121 PDB 3GBI 3GBI 1 21 DBREF 3GBI B 119 125 PDB 3GBI 3GBI 1 7 DBREF 3GBI C 209 214 PDB 3GBI 3GBI 1 6 DBREF 3GBI D 101 108 PDB 3GBI 3GBI 1 8 SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT DA DC SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DG DT DA DC DA SEQRES 1 C 6 DG DG DC DT DG DC SEQRES 1 D 8 DT DC DT DG DA DT DG DT LINK P DC B 119 O3' DA B 125 1555 2555 1.61 LINK O3' DA B 125 P DC B 119 1555 3555 1.61 LINK P DG C 209 O3' DT D 108 1555 3555 1.61 LINK O3' DT D 108 P DG C 209 1555 2555 1.61 CRYST1 107.161 107.161 93.144 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009332 0.005388 0.000000 0.00000 SCALE2 0.000000 0.010775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010736 0.00000 MASTER 326 0 0 0 0 0 0 6 0 0 0 5 END