HEADER ISOMERASE 19-FEB-09 3GBD TITLE CRYSTAL STRUCTURE OF THE ISOMALTULOSE SYNTHASE SMUA FROM TITLE 2 PROTAMINOBACTER RUBRUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE ISOMERASE SMUA FROM PROTAMINOBACTER COMPND 3 RUBRUM; COMPND 4 CHAIN: A; COMPND 5 EC: 5.4.99.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTAMINOBACTER RUBRUM; SOURCE 3 ORGANISM_TAXID: 126825; SOURCE 4 STRAIN: CBS 547.77; SOURCE 5 GENE: SMUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHWG314 KEYWDS SUCROSE ISOMERASE, GLYCOSIDE HYDROLASE, PROTAMINOBACTER KEYWDS 2 RUBRUM EXPDTA X-RAY DIFFRACTION AUTHOR S.RAVAUD,X.ROBERT,R.HASER,N.AGHAJARI REVDAT 2 30-JUN-09 3GBD 1 JRNL REVDAT 1 26-MAY-09 3GBD 0 JRNL AUTH S.RAVAUD,X.ROBERT,H.WATZLAWICK,R.HASER,R.MATTES, JRNL AUTH 2 N.AGHAJARI JRNL TITL STRUCTURAL DETERMINANTS OF PRODUCT SPECIFICITY OF JRNL TITL 2 SUCROSE ISOMERASES JRNL REF FEBS LETT. V. 583 1964 2009 JRNL REFN ISSN 0014-5793 JRNL PMID 19427862 JRNL DOI 10.1016/J.FEBSLET.2009.05.002 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2590194.080 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 48439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4879 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7250 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 758 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 699 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 3.78000 REMARK 3 B33 (A**2) : -3.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.02 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.880 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.110 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 46.48 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : EGL_XPLOR.PARAM REMARK 3 PARAMETER FILE 5 : FLC_XPLOR.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : EGL_XPLOR.TOP REMARK 3 TOPOLOGY FILE 5 : FLC_XPLOR.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GBD COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-09. REMARK 100 THE RCSB ID CODE IS RCSB051654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9803 REMARK 200 MONOCHROMATOR : SYNCHROTRON MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51963 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31500 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1M53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-LI-CITRATE, 20% PEG3350, REMARK 280 PH7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.81500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 454 CG CD CE NZ REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 GLN A 527 CG CD OE1 NE2 REMARK 470 LYS A 549 CB CG CD CE NZ REMARK 470 ASN A 550 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1597 O HOH A 1697 2.00 REMARK 500 O HOH A 1421 O HOH A 1622 2.01 REMARK 500 O HOH A 1142 O HOH A 1652 2.05 REMARK 500 O HOH A 1289 O HOH A 1628 2.10 REMARK 500 O GLN A 573 O HOH A 1678 2.11 REMARK 500 O HOH A 1091 O HOH A 1298 2.12 REMARK 500 O HOH A 1534 O HOH A 1613 2.17 REMARK 500 O HOH A 1168 O HOH A 1292 2.17 REMARK 500 O HOH A 1547 O HOH A 1626 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1448 O HOH A 1642 4556 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 34 -68.77 -91.61 REMARK 500 ASN A 76 62.36 37.44 REMARK 500 SER A 132 149.31 -171.36 REMARK 500 PHE A 178 -132.00 -100.51 REMARK 500 THR A 215 59.56 32.28 REMARK 500 PHE A 225 55.46 37.27 REMARK 500 ASN A 235 58.45 -164.76 REMARK 500 VAL A 257 -66.47 -131.76 REMARK 500 GLU A 287 -97.95 -121.75 REMARK 500 ASP A 304 -63.49 -94.35 REMARK 500 ASN A 340 -167.63 -177.32 REMARK 500 LYS A 392 -75.12 -106.54 REMARK 500 ASP A 500 89.96 -172.32 REMARK 500 ASN A 547 -103.82 -87.15 REMARK 500 SER A 548 159.46 106.27 REMARK 500 LYS A 549 -5.45 65.17 REMARK 500 ASN A 550 68.75 -108.00 REMARK 500 TRP A 564 13.67 54.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1468 DISTANCE = 5.80 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8003 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8004 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8005 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8006 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8007 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8008 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 9000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GBE RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN REMARK 999 DOES NOT CURRENTLY EXIST. REMARK 999 THIS SEQUENCE WILL BE DEPOSITED IN THE SEQUENCE DATABASE. DBREF 3GBD A 16 573 PDB 3GBD 3GBD 16 573 SEQRES 1 A 558 THR ILE PRO LYS TRP TRP LYS GLU ALA VAL PHE TYR GLN SEQRES 2 A 558 VAL TYR PRO ARG SER PHE LYS ASP THR ASN GLY ASP GLY SEQRES 3 A 558 ILE GLY ASP ILE ASN GLY ILE ILE GLU LYS LEU ASP TYR SEQRES 4 A 558 LEU LYS ALA LEU GLY ILE ASP ALA ILE TRP ILE ASN PRO SEQRES 5 A 558 HIS TYR ASP SER PRO ASN THR ASP ASN GLY TYR ASP ILE SEQRES 6 A 558 ARG ASP TYR ARG LYS ILE MET LYS GLU TYR GLY THR MET SEQRES 7 A 558 GLU ASP PHE ASP ARG LEU ILE SER GLU MET LYS LYS ARG SEQRES 8 A 558 ASN MET ARG LEU MET ILE ASP VAL VAL ILE ASN HIS THR SEQRES 9 A 558 SER ASP GLN ASN GLU TRP PHE VAL LYS SER LYS SER SER SEQRES 10 A 558 LYS ASP ASN PRO TYR ARG GLY TYR TYR PHE TRP LYS ASP SEQRES 11 A 558 ALA LYS GLU GLY GLN ALA PRO ASN ASN TYR PRO SER PHE SEQRES 12 A 558 PHE GLY GLY SER ALA TRP GLN LYS ASP GLU LYS THR ASN SEQRES 13 A 558 GLN TYR TYR LEU HIS TYR PHE ALA LYS GLN GLN PRO ASP SEQRES 14 A 558 LEU ASN TRP ASP ASN PRO LYS VAL ARG GLN ASP LEU TYR SEQRES 15 A 558 ALA MET LEU ARG PHE TRP LEU ASP LYS GLY VAL SER GLY SEQRES 16 A 558 LEU ARG PHE ASP THR VAL ALA THR TYR SER LYS ILE PRO SEQRES 17 A 558 ASP PHE PRO ASN LEU THR GLN GLN GLN LEU LYS ASN PHE SEQRES 18 A 558 ALA ALA GLU TYR THR LYS GLY PRO ASN ILE HIS ARG TYR SEQRES 19 A 558 VAL ASN GLU MET ASN LYS GLU VAL LEU SER HIS TYR ASP SEQRES 20 A 558 ILE ALA THR ALA GLY GLU ILE PHE GLY VAL PRO LEU ASP SEQRES 21 A 558 GLN SER ILE LYS PHE PHE ASP ARG ARG ARG ASP GLU LEU SEQRES 22 A 558 ASN ILE ALA PHE THR PHE ASP LEU ILE ARG LEU ASP ARG SEQRES 23 A 558 ASP SER ASP GLN ARG TRP ARG ARG LYS ASP TRP LYS LEU SEQRES 24 A 558 SER GLN PHE ARG GLN ILE ILE ASP ASN VAL ASP ARG THR SEQRES 25 A 558 ALA GLY GLU TYR GLY TRP ASN ALA PHE PHE LEU ASP ASN SEQRES 26 A 558 HIS ASP ASN PRO ARG ALA VAL SER HIS PHE GLY ASP ASP SEQRES 27 A 558 ARG PRO GLN TRP ARG GLU PRO SER ALA LYS ALA LEU ALA SEQRES 28 A 558 THR LEU THR LEU THR GLN ARG ALA THR PRO PHE ILE TYR SEQRES 29 A 558 GLN GLY SER GLU LEU GLY MET THR ASN TYR PRO PHE LYS SEQRES 30 A 558 ALA ILE ASP GLU PHE ASP ASP ILE GLU VAL LYS GLY PHE SEQRES 31 A 558 TRP HIS ASP TYR VAL GLU THR GLY LYS VAL LYS ALA ASP SEQRES 32 A 558 GLU PHE LEU GLN ASN VAL ARG LEU THR SER ARG ASP ASN SEQRES 33 A 558 SER ARG THR PRO PHE GLN TRP ASP GLY SER LYS ASN ALA SEQRES 34 A 558 GLY PHE THR SER GLY LYS PRO TRP PHE LYS VAL ASN PRO SEQRES 35 A 558 ASN TYR GLN GLU ILE ASN ALA VAL SER GLN VAL THR GLN SEQRES 36 A 558 PRO ASP SER VAL PHE ASN TYR TYR ARG GLN LEU ILE LYS SEQRES 37 A 558 ILE ARG HIS ASP ILE PRO ALA LEU THR TYR GLY THR TYR SEQRES 38 A 558 THR ASP LEU ASP PRO ALA ASN ASP SER VAL TYR ALA TYR SEQRES 39 A 558 THR ARG SER LEU GLY ALA GLU LYS TYR LEU VAL VAL VAL SEQRES 40 A 558 ASN PHE LYS GLU GLN MET MET ARG TYR LYS LEU PRO ASP SEQRES 41 A 558 ASN LEU SER ILE GLU LYS VAL ILE ILE ASP SER ASN SER SEQRES 42 A 558 LYS ASN VAL VAL LYS LYS ASN ASP SER LEU LEU GLU LEU SEQRES 43 A 558 LYS PRO TRP GLN SER GLY VAL TYR LYS LEU ASN GLN HET EDO A8001 4 HET EDO A8002 4 HET EDO A8003 4 HET EDO A8004 4 HET EDO A8005 4 HET EDO A8006 4 HET EDO A8007 4 HET EDO A8008 4 HET FLC A9000 13 HETNAM EDO 1,2-ETHANEDIOL HETNAM FLC CITRATE ANION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 8(C2 H6 O2) FORMUL 10 FLC C6 H5 O7 3- FORMUL 11 HOH *699(H2 O) HELIX 1 1 LYS A 19 ALA A 24 1 6 HELIX 2 2 TYR A 30 PHE A 34 5 5 HELIX 3 3 ASP A 44 LYS A 51 1 8 HELIX 4 4 LYS A 51 GLY A 59 1 9 HELIX 5 5 LYS A 88 GLY A 91 5 4 HELIX 6 6 THR A 92 ARG A 106 1 15 HELIX 7 7 ASN A 123 SER A 132 1 10 HELIX 8 8 TYR A 137 TYR A 141 5 5 HELIX 9 9 ASN A 189 ASP A 205 1 17 HELIX 10 10 THR A 215 TYR A 219 5 5 HELIX 11 11 GLN A 231 ASN A 235 5 5 HELIX 12 12 PHE A 236 THR A 241 1 6 HELIX 13 13 ASN A 245 VAL A 257 1 13 HELIX 14 14 LEU A 258 TYR A 261 5 4 HELIX 15 15 PRO A 273 ASP A 282 1 10 HELIX 16 16 ARG A 283 ASP A 286 5 4 HELIX 17 17 LYS A 313 GLY A 329 1 17 HELIX 18 18 ARG A 345 GLY A 351 1 7 HELIX 19 19 TRP A 357 THR A 371 1 15 HELIX 20 20 ALA A 393 PHE A 397 5 5 HELIX 21 21 ASP A 399 VAL A 410 1 12 HELIX 22 22 LYS A 416 SER A 428 1 13 HELIX 23 23 ARG A 429 ARG A 433 5 5 HELIX 24 24 SER A 441 PHE A 446 5 6 HELIX 25 25 ASN A 456 GLU A 461 5 6 HELIX 26 26 ASN A 463 THR A 469 1 7 HELIX 27 27 SER A 473 ILE A 488 1 16 HELIX 28 28 PRO A 489 GLY A 494 1 6 SHEET 1 A 8 ILE A 290 PHE A 292 0 SHEET 2 A 8 ALA A 264 GLU A 268 1 N THR A 265 O ILE A 290 SHEET 3 A 8 GLY A 210 PHE A 213 1 N PHE A 213 O ALA A 266 SHEET 4 A 8 ARG A 109 VAL A 114 1 N VAL A 114 O ARG A 212 SHEET 5 A 8 ALA A 62 ILE A 65 1 N ILE A 63 O MET A 111 SHEET 6 A 8 PHE A 26 VAL A 29 1 N VAL A 29 O TRP A 64 SHEET 7 A 8 THR A 375 TYR A 379 1 O ILE A 378 N GLN A 28 SHEET 8 A 8 ALA A 335 PHE A 336 1 N PHE A 336 O THR A 375 SHEET 1 B 2 TYR A 69 ASP A 70 0 SHEET 2 B 2 ASP A 82 ILE A 86 -1 O LYS A 85 N ASP A 70 SHEET 1 C 3 TRP A 143 LYS A 144 0 SHEET 2 C 3 GLN A 172 LEU A 175 -1 O TYR A 173 N LYS A 144 SHEET 3 C 3 TRP A 164 ASP A 167 -1 N GLN A 165 O TYR A 174 SHEET 1 D 5 THR A 495 ASP A 498 0 SHEET 2 D 5 VAL A 506 LEU A 513 -1 O SER A 512 N THR A 495 SHEET 3 D 5 GLU A 516 ASN A 523 -1 O TYR A 518 N ARG A 511 SHEET 4 D 5 SER A 566 LEU A 571 -1 O TYR A 569 N LEU A 519 SHEET 5 D 5 ILE A 539 ASP A 545 -1 N ILE A 544 O VAL A 568 SHEET 1 E 2 MET A 529 LYS A 532 0 SHEET 2 E 2 LEU A 558 LEU A 561 -1 O LEU A 561 N MET A 529 SITE 1 AC1 6 ASP A 214 GLU A 268 PHE A 270 ASP A 342 SITE 2 AC1 6 EDO A8002 EDO A8003 SITE 1 AC2 7 PHE A 270 ARG A 298 ASP A 342 GLU A 401 SITE 2 AC2 7 ARG A 429 HOH A1033 EDO A8001 SITE 1 AC3 7 ASP A 75 HIS A 118 PHE A 159 ASP A 214 SITE 2 AC3 7 ARG A 429 HOH A1023 EDO A8001 SITE 1 AC4 10 SER A 157 PHE A 158 GLY A 160 PHE A 236 SITE 2 AC4 10 ARG A 306 GLY A 404 PHE A 405 ASP A 408 SITE 3 AC4 10 TYR A 409 HOH A1040 SITE 1 AC5 3 LYS A 51 VAL A 468 HOH A1452 SITE 1 AC6 6 ASP A 353 ASN A 388 PRO A 390 HOH A1206 SITE 2 AC6 6 HOH A1210 HOH A1620 SITE 1 AC7 3 ILE A 222 ASP A 224 PHE A 225 SITE 1 AC8 4 TRP A 312 HOH A1231 HOH A1282 HOH A1582 SITE 1 AC9 11 LYS A 169 PRO A 244 ASN A 245 ILE A 246 SITE 2 AC9 11 HIS A 247 ARG A 248 LYS A 279 HOH A1137 SITE 3 AC9 11 HOH A1381 HOH A1495 HOH A1664 CRYST1 61.630 81.390 135.570 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007376 0.00000 MASTER 357 0 9 28 20 0 17 6 0 0 0 43 END