HEADER TRANSFERASE 05-FEB-09 3G5L TITLE CRYSTAL STRUCTURE OF PUTATIVE S-ADENOSYLMETHIONINE DEPENDENT TITLE 2 METHYLTRANSFERASE FROM LISTERIA MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE S-ADENOSYLMETHIONINE DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES STR. 4B F2365; SOURCE 3 ORGANISM_TAXID: 265669; SOURCE 4 STRAIN: F2365, SEROTYPE 4B; SOURCE 5 GENE: LMOF2365_1325; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, METHYLTRANSFERASE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM NYSGXRC, KEYWDS 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,P.SAMPATHKUMAR,M.GILMORE,S.MILLER,J.KOSS,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 4 10-FEB-21 3G5L 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 21-NOV-18 3G5L 1 AUTHOR REVDAT 2 01-NOV-17 3G5L 1 REMARK REVDAT 1 17-FEB-09 3G5L 0 JRNL AUTH Y.PATSKOVSKY,P.SAMPATHKUMAR,M.GILMORE,S.MILLER,J.KOSS, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE DEPENDENT JRNL TITL 2 METHYLTRANSFERASE FROM LISTERIA MONOCYTOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 19873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 670 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.413 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.535 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3752 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5108 ; 1.199 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 6.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;38.831 ;24.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;17.880 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2849 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1541 ; 0.139 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2492 ; 0.295 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 329 ; 0.162 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.111 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.122 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2315 ; 6.082 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3654 ; 7.886 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1659 ;12.288 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1430 ;15.198 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 90.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M LITHIUM CHLORIDE PH 7.5, 100MM REMARK 280 SODIUM ACETATE, 30% PEG 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.40600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.98650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.26600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.98650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.40600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.26600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 28.40600 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 92.53200 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -49.98650 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 TYR A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 LYS A 9 REMARK 465 HIS A 10 REMARK 465 PHE A 11 REMARK 465 PHE A 12 REMARK 465 GLU A 13 REMARK 465 GLN A 14 REMARK 465 TYR A 15 REMARK 465 SER A 16 REMARK 465 GLN A 17 REMARK 465 MET A 18 REMARK 465 PRO A 19 REMARK 465 ARG A 20 REMARK 465 SER A 21 REMARK 465 LYS A 22 REMARK 465 GLY A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 TYR B 6 REMARK 465 ASP B 7 REMARK 465 ASP B 8 REMARK 465 LYS B 9 REMARK 465 HIS B 10 REMARK 465 PHE B 11 REMARK 465 PHE B 12 REMARK 465 GLU B 13 REMARK 465 GLN B 14 REMARK 465 TYR B 15 REMARK 465 SER B 16 REMARK 465 GLN B 17 REMARK 465 MET B 18 REMARK 465 PRO B 19 REMARK 465 ARG B 20 REMARK 465 SER B 21 REMARK 465 LYS B 22 REMARK 465 GLU B 23 REMARK 465 GLY B 24 REMARK 465 LEU B 25 REMARK 465 PRO B 218 REMARK 465 GLU B 219 REMARK 465 LEU B 220 REMARK 465 LYS B 221 REMARK 465 ASP B 222 REMARK 465 LEU B 223 REMARK 465 GLY B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 115 -40.98 -130.88 REMARK 500 LEU A 223 119.72 -39.05 REMARK 500 ALA B 115 -33.96 -136.41 REMARK 500 ARG B 171 41.03 38.44 REMARK 500 GLU B 225 55.64 -98.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 160 THR B 161 145.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13848A RELATED DB: TARGETDB DBREF 3G5L A -1 243 UNP Q720B4 Q720B4_LISMF 1 243 DBREF 3G5L B -1 243 UNP Q720B4 Q720B4_LISMF 1 243 SEQADV 3G5L SER A 0 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L LEU A 1 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L GLU A 244 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L GLY A 245 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS A 246 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS A 247 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS A 248 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS A 249 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS A 250 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS A 251 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L SER B 0 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L LEU B 1 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L GLU B 244 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L GLY B 245 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS B 246 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS B 247 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS B 248 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS B 249 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS B 250 UNP Q720B4 EXPRESSION TAG SEQADV 3G5L HIS B 251 UNP Q720B4 EXPRESSION TAG SEQRES 1 A 253 MET SER LEU LYS GLU ASN LYS TYR ASP ASP LYS HIS PHE SEQRES 2 A 253 PHE GLU GLN TYR SER GLN MET PRO ARG SER LYS GLU GLY SEQRES 3 A 253 LEU LYS ALA ALA GLY GLU TRP HIS GLU LEU LYS LYS MET SEQRES 4 A 253 LEU PRO ASP PHE ASN GLN LYS THR VAL LEU ASP LEU GLY SEQRES 5 A 253 CYS GLY PHE GLY TRP HIS CYS ILE TYR ALA ALA GLU HIS SEQRES 6 A 253 GLY ALA LYS LYS VAL LEU GLY ILE ASP LEU SER GLU ARG SEQRES 7 A 253 MET LEU THR GLU ALA LYS ARG LYS THR THR SER PRO VAL SEQRES 8 A 253 VAL CYS TYR GLU GLN LYS ALA ILE GLU ASP ILE ALA ILE SEQRES 9 A 253 GLU PRO ASP ALA TYR ASN VAL VAL LEU SER SER LEU ALA SEQRES 10 A 253 LEU HIS TYR ILE ALA SER PHE ASP ASP ILE CYS LYS LYS SEQRES 11 A 253 VAL TYR ILE ASN LEU LYS SER SER GLY SER PHE ILE PHE SEQRES 12 A 253 SER VAL GLU HIS PRO VAL PHE THR ALA ASP GLY ARG GLN SEQRES 13 A 253 ASP TRP TYR THR ASP GLU THR GLY ASN LYS LEU HIS TRP SEQRES 14 A 253 PRO VAL ASP ARG TYR PHE ASN GLU SER MET ARG THR SER SEQRES 15 A 253 HIS PHE LEU GLY GLU ASP VAL GLN LYS TYR HIS ARG THR SEQRES 16 A 253 VAL THR THR TYR ILE GLN THR LEU LEU LYS ASN GLY PHE SEQRES 17 A 253 GLN ILE ASN SER VAL ILE GLU PRO GLU PRO ALA PRO GLU SEQRES 18 A 253 LEU LYS ASP LEU PRO GLU MET GLN ASP GLU TYR ARG ARG SEQRES 19 A 253 PRO MET MET LEU LEU ILE SER ALA THR LYS GLN GLU GLY SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS SEQRES 1 B 253 MET SER LEU LYS GLU ASN LYS TYR ASP ASP LYS HIS PHE SEQRES 2 B 253 PHE GLU GLN TYR SER GLN MET PRO ARG SER LYS GLU GLY SEQRES 3 B 253 LEU LYS ALA ALA GLY GLU TRP HIS GLU LEU LYS LYS MET SEQRES 4 B 253 LEU PRO ASP PHE ASN GLN LYS THR VAL LEU ASP LEU GLY SEQRES 5 B 253 CYS GLY PHE GLY TRP HIS CYS ILE TYR ALA ALA GLU HIS SEQRES 6 B 253 GLY ALA LYS LYS VAL LEU GLY ILE ASP LEU SER GLU ARG SEQRES 7 B 253 MET LEU THR GLU ALA LYS ARG LYS THR THR SER PRO VAL SEQRES 8 B 253 VAL CYS TYR GLU GLN LYS ALA ILE GLU ASP ILE ALA ILE SEQRES 9 B 253 GLU PRO ASP ALA TYR ASN VAL VAL LEU SER SER LEU ALA SEQRES 10 B 253 LEU HIS TYR ILE ALA SER PHE ASP ASP ILE CYS LYS LYS SEQRES 11 B 253 VAL TYR ILE ASN LEU LYS SER SER GLY SER PHE ILE PHE SEQRES 12 B 253 SER VAL GLU HIS PRO VAL PHE THR ALA ASP GLY ARG GLN SEQRES 13 B 253 ASP TRP TYR THR ASP GLU THR GLY ASN LYS LEU HIS TRP SEQRES 14 B 253 PRO VAL ASP ARG TYR PHE ASN GLU SER MET ARG THR SER SEQRES 15 B 253 HIS PHE LEU GLY GLU ASP VAL GLN LYS TYR HIS ARG THR SEQRES 16 B 253 VAL THR THR TYR ILE GLN THR LEU LEU LYS ASN GLY PHE SEQRES 17 B 253 GLN ILE ASN SER VAL ILE GLU PRO GLU PRO ALA PRO GLU SEQRES 18 B 253 LEU LYS ASP LEU PRO GLU MET GLN ASP GLU TYR ARG ARG SEQRES 19 B 253 PRO MET MET LEU LEU ILE SER ALA THR LYS GLN GLU GLY SEQRES 20 B 253 HIS HIS HIS HIS HIS HIS HET CL A 252 1 HET CL B 252 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *135(H2 O) HELIX 1 1 GLU A 23 LYS A 36 1 14 HELIX 2 2 GLY A 54 HIS A 63 1 10 HELIX 3 3 SER A 74 THR A 85 1 12 HELIX 4 4 ALA A 96 ILE A 100 5 5 HELIX 5 5 ALA A 115 ILE A 119 5 5 HELIX 6 6 SER A 121 ASN A 132 1 12 HELIX 7 7 HIS A 145 ALA A 150 1 6 HELIX 8 8 THR A 193 ASN A 204 1 12 HELIX 9 9 ALA A 217 LYS A 221 5 5 HELIX 10 10 LEU A 223 ARG A 231 5 9 HELIX 11 11 LYS B 26 LYS B 36 1 11 HELIX 12 12 GLY B 54 HIS B 63 1 10 HELIX 13 13 SER B 74 LYS B 84 1 11 HELIX 14 14 ALA B 96 ILE B 100 5 5 HELIX 15 15 ALA B 115 ILE B 119 5 5 HELIX 16 16 SER B 121 ASN B 132 1 12 HELIX 17 17 HIS B 145 ALA B 150 1 6 HELIX 18 18 THR B 193 ASN B 204 1 12 SHEET 1 A 7 VAL A 90 GLN A 94 0 SHEET 2 A 7 LYS A 67 ASP A 72 1 N GLY A 70 O CYS A 91 SHEET 3 A 7 THR A 45 LEU A 49 1 N ASP A 48 O LEU A 69 SHEET 4 A 7 TYR A 107 SER A 113 1 O LEU A 111 N LEU A 47 SHEET 5 A 7 LEU A 133 GLU A 144 1 O SER A 138 N ASN A 108 SHEET 6 A 7 MET A 235 LYS A 242 -1 O LEU A 236 N VAL A 143 SHEET 7 A 7 PHE A 206 ILE A 212 -1 N ILE A 212 O LEU A 237 SHEET 1 B 4 TYR A 157 THR A 158 0 SHEET 2 B 4 LYS A 164 VAL A 169 -1 O LEU A 165 N TYR A 157 SHEET 3 B 4 LYS B 164 VAL B 169 -1 O VAL B 169 N TRP A 167 SHEET 4 B 4 TYR B 157 THR B 158 -1 N TYR B 157 O LEU B 165 SHEET 1 C 2 MET A 177 PHE A 182 0 SHEET 2 C 2 GLU A 185 TYR A 190 -1 O LYS A 189 N ARG A 178 SHEET 1 D 7 VAL B 90 GLN B 94 0 SHEET 2 D 7 LYS B 67 ASP B 72 1 N VAL B 68 O CYS B 91 SHEET 3 D 7 THR B 45 LEU B 49 1 N VAL B 46 O LYS B 67 SHEET 4 D 7 TYR B 107 SER B 113 1 O ASN B 108 N THR B 45 SHEET 5 D 7 LEU B 133 GLU B 144 1 O SER B 138 N VAL B 110 SHEET 6 D 7 MET B 235 LYS B 242 -1 O LEU B 236 N VAL B 143 SHEET 7 D 7 PHE B 206 ILE B 212 -1 N ILE B 212 O LEU B 237 SHEET 1 E 2 MET B 177 PHE B 182 0 SHEET 2 E 2 GLU B 185 TYR B 190 -1 O LYS B 189 N ARG B 178 SITE 1 AC1 3 PHE A 122 ASP A 123 HOH A 269 SITE 1 AC2 3 PHE B 122 ASP B 123 HOH B 285 CRYST1 56.812 92.532 99.973 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010003 0.00000 MASTER 379 0 2 18 22 0 2 6 0 0 0 40 END