HEADER FLAVOPROTEIN 17-JAN-09 3FW7 TITLE STRUCTURE OF BERBERINE BRIDGE ENZYME, H104A VARIANT CAVEAT 3FW7 MAN B 3 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BERBERINE BRIDGE-FORMING ENZYME, BBE, COMPND 5 TETRAHYDROPROTOBERBERINE SYNTHASE; COMPND 6 EC: 1.21.3.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHSCHOLZIA CALIFORNICA; SOURCE 3 ORGANISM_COMMON: CALIFORNIA POPPY; SOURCE 4 ORGANISM_TAXID: 3467; SOURCE 5 GENE: BBE1; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZA KEYWDS BI-COVALENT FLAVINYLATION, N-GLYCOSYLATION, ALAKLOID BIOSYNTHESIS, KEYWDS 2 OXIDOREDUCTASE, ALKALOID METABOLISM, CYTOPLASMIC VESICLE, FAD, KEYWDS 3 FLAVOPROTEIN, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.WINKLER,P.MACHEROUX,K.GRUBER REVDAT 4 20-OCT-21 3FW7 1 SEQADV HETSYN REVDAT 3 29-JUL-20 3FW7 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-JUL-11 3FW7 1 VERSN REVDAT 1 19-MAY-09 3FW7 0 JRNL AUTH A.WINKLER,K.MOTZ,S.RIEDL,M.PUHL,P.MACHEROUX,K.GRUBER JRNL TITL STRUCTURAL ROLES OF BIOCOVALENT FLANINYLATION IN BERBERINE JRNL TITL 2 BRIDGE ENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.WINKLER,A.LYSKOWSKI,S.RIEDL,M.PUHL,T.M.KUTCHAN, REMARK 1 AUTH 2 P.MACHEROUX,K.GRUBER REMARK 1 TITL A CONCERTED MECHANISM FOR BERBERINE BRIDGE ENZYME. REMARK 1 REF NAT. CHEM. BIOL. V. 4 739 2008 REMARK 1 REFN ISSN 1552-4450 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7500 - 4.9520 1.00 2838 146 0.1880 0.1920 REMARK 3 2 4.9520 - 3.9310 1.00 2670 154 0.1350 0.1490 REMARK 3 3 3.9310 - 3.4350 1.00 2630 125 0.1440 0.1670 REMARK 3 4 3.4350 - 3.1210 1.00 2600 141 0.1630 0.1760 REMARK 3 5 3.1210 - 2.8970 1.00 2588 134 0.1710 0.2050 REMARK 3 6 2.8970 - 2.7260 1.00 2554 156 0.1690 0.1750 REMARK 3 7 2.7260 - 2.5900 1.00 2568 138 0.1640 0.2210 REMARK 3 8 2.5900 - 2.4770 1.00 2542 132 0.1710 0.1900 REMARK 3 9 2.4770 - 2.3820 1.00 2547 133 0.1640 0.2220 REMARK 3 10 2.3820 - 2.2990 1.00 2537 143 0.1640 0.1820 REMARK 3 11 2.2990 - 2.2280 1.00 2531 127 0.1770 0.2480 REMARK 3 12 2.2280 - 2.1640 1.00 2534 140 0.1650 0.2040 REMARK 3 13 2.1640 - 2.1070 1.00 2533 143 0.1510 0.1980 REMARK 3 14 2.1070 - 2.0560 1.00 2526 140 0.1570 0.2040 REMARK 3 15 2.0560 - 2.0090 1.00 2531 120 0.1550 0.2070 REMARK 3 16 2.0090 - 1.9660 1.00 2478 146 0.1660 0.2180 REMARK 3 17 1.9660 - 1.9270 1.00 2529 132 0.1760 0.2220 REMARK 3 18 1.9270 - 1.8900 1.00 2525 126 0.2040 0.2260 REMARK 3 19 1.8900 - 1.8570 1.00 2486 129 0.1940 0.2480 REMARK 3 20 1.8570 - 1.8250 0.96 2409 138 0.1930 0.2480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 54.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00900 REMARK 3 B22 (A**2) : 1.00900 REMARK 3 B33 (A**2) : -2.01800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4324 REMARK 3 ANGLE : 1.013 5912 REMARK 3 CHIRALITY : 0.068 653 REMARK 3 PLANARITY : 0.004 746 REMARK 3 DIHEDRAL : 17.490 1605 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 23:39) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3466 3.2768 -41.7642 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.3995 REMARK 3 T33: 0.1929 T12: 0.0259 REMARK 3 T13: 0.0410 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 3.1131 L22: 2.0705 REMARK 3 L33: -3.3598 L12: 0.7743 REMARK 3 L13: 0.7723 L23: -0.0137 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: 0.8372 S13: -0.2875 REMARK 3 S21: -0.5703 S22: 0.1384 S23: 0.0387 REMARK 3 S31: 0.2341 S32: 0.0862 S33: -0.0395 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 40:95) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3792 -4.1278 -33.7992 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.3033 REMARK 3 T33: 0.1609 T12: -0.0088 REMARK 3 T13: -0.0048 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 1.1083 L22: 1.8423 REMARK 3 L33: 0.6571 L12: 0.0177 REMARK 3 L13: -0.1234 L23: 0.8209 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: 0.4172 S13: -0.2573 REMARK 3 S21: -0.1997 S22: -0.1422 S23: -0.0567 REMARK 3 S31: 0.1649 S32: -0.0440 S33: 0.0663 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 96:242) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2081 6.8673 -16.1927 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.0996 REMARK 3 T33: 0.1043 T12: -0.0148 REMARK 3 T13: -0.0052 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.7740 L22: 0.7868 REMARK 3 L33: 1.0144 L12: -0.0147 REMARK 3 L13: -0.0224 L23: 0.0178 REMARK 3 S TENSOR REMARK 3 S11: 0.0846 S12: 0.0818 S13: -0.0360 REMARK 3 S21: -0.0197 S22: 0.0132 S23: -0.0181 REMARK 3 S31: 0.0103 S32: 0.0231 S33: -0.0738 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 245:367) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8208 -6.9136 2.0288 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.0529 REMARK 3 T33: 0.0848 T12: -0.0243 REMARK 3 T13: -0.0194 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.1150 L22: 0.3135 REMARK 3 L33: 0.6234 L12: 0.3297 REMARK 3 L13: -0.0654 L23: -0.3685 REMARK 3 S TENSOR REMARK 3 S11: 0.1128 S12: -0.1533 S13: -0.1808 REMARK 3 S21: 0.0399 S22: -0.0791 S23: 0.0040 REMARK 3 S31: 0.0947 S32: -0.0055 S33: -0.0398 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 368:458) REMARK 3 ORIGIN FOR THE GROUP (A): -39.7754 -3.8165 -9.6850 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.1279 REMARK 3 T33: 0.1046 T12: -0.0272 REMARK 3 T13: -0.0039 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.3390 L22: 0.7396 REMARK 3 L33: 0.5978 L12: 0.6067 REMARK 3 L13: -0.1587 L23: -0.5478 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.1447 S13: -0.0636 REMARK 3 S21: -0.0419 S22: 0.0871 S23: 0.0667 REMARK 3 S31: 0.0454 S32: -0.1292 S33: -0.0647 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 459:518) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6376 11.3575 -26.8318 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.1607 REMARK 3 T33: 0.1080 T12: 0.0465 REMARK 3 T13: 0.0093 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 0.7270 L22: 0.2104 REMARK 3 L33: 0.7555 L12: -0.2951 REMARK 3 L13: 0.2819 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: 0.2179 S13: 0.1185 REMARK 3 S21: -0.0842 S22: 0.0131 S23: 0.1188 REMARK 3 S31: -0.0894 S32: -0.2430 S33: -0.1121 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 519:524) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2136 20.9961 -32.5402 REMARK 3 T TENSOR REMARK 3 T11: 0.5226 T22: 0.3387 REMARK 3 T33: 0.5003 T12: 0.1618 REMARK 3 T13: 0.0491 T23: 0.2386 REMARK 3 L TENSOR REMARK 3 L11: -0.9618 L22: -2.3896 REMARK 3 L33: 5.0740 L12: -0.3759 REMARK 3 L13: 2.6945 L23: 4.9823 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.0162 S13: 0.1377 REMARK 3 S21: 0.1224 S22: -0.0229 S23: 0.0012 REMARK 3 S31: -0.1090 S32: -0.1210 S33: 0.0395 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53899 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.825 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.77300 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3D2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUMCHLORIDE, 30% PEG-4000, REMARK 280 0.1 M TRIS/HCL, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.64000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.40000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.82000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.40000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 185.46000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.40000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.82000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.40000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 185.46000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.64000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 748 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 107.37 -57.51 REMARK 500 SER A 101 -80.66 -108.65 REMARK 500 SER A 101 -79.25 -109.68 REMARK 500 TYR A 111 17.72 -142.08 REMARK 500 GLU A 287 -120.24 53.11 REMARK 500 GLU A 287 -120.15 53.01 REMARK 500 PHE A 313 58.65 -148.16 REMARK 500 LYS A 350 -75.84 -65.19 REMARK 500 PHE A 351 -94.50 115.51 REMARK 500 GLU A 353 40.36 -109.94 REMARK 500 PHE A 392 -137.08 -95.64 REMARK 500 ARG A 409 -121.30 -117.34 REMARK 500 HIS A 459 51.28 -112.33 REMARK 500 LEU A 491 -129.79 47.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 523 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 4 O REMARK 620 2 HOH A 5 O 91.5 REMARK 620 3 ASP A 45 OD1 83.0 104.7 REMARK 620 4 ASP A 47 OD1 90.3 177.1 77.7 REMARK 620 5 HOH A 524 O 172.2 92.0 89.3 86.5 REMARK 620 6 HOH A 525 O 100.2 91.3 163.7 86.2 86.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D2D RELATED DB: PDB REMARK 900 RELATED ID: 3D2H RELATED DB: PDB REMARK 900 RELATED ID: 3D2J RELATED DB: PDB DBREF 3FW7 A 24 520 UNP P30986 RETO_ESCCA 24 520 SEQADV 3FW7 ALA A 23 UNP P30986 EXPRESSION TAG SEQADV 3FW7 ALA A 104 UNP P30986 HIS 104 ENGINEERED MUTATION SEQRES 1 A 498 ALA GLY ASN ASP LEU LEU SER CYS LEU THR PHE ASN GLY SEQRES 2 A 498 VAL ARG ASN HIS THR VAL PHE SER ALA ASP SER ASP SER SEQRES 3 A 498 ASP PHE ASN ARG PHE LEU HIS LEU SER ILE GLN ASN PRO SEQRES 4 A 498 LEU PHE GLN ASN SER LEU ILE SER LYS PRO SER ALA ILE SEQRES 5 A 498 ILE LEU PRO GLY SER LYS GLU GLU LEU SER ASN THR ILE SEQRES 6 A 498 ARG CYS ILE ARG LYS GLY SER TRP THR ILE ARG LEU ARG SEQRES 7 A 498 SER GLY GLY ALA SER TYR GLU GLY LEU SER TYR THR SER SEQRES 8 A 498 ASP THR PRO PHE ILE LEU ILE ASP LEU MET ASN LEU ASN SEQRES 9 A 498 ARG VAL SER ILE ASP LEU GLU SER GLU THR ALA TRP VAL SEQRES 10 A 498 GLU SER GLY SER THR LEU GLY GLU LEU TYR TYR ALA ILE SEQRES 11 A 498 THR GLU SER SER SER LYS LEU GLY PHE THR ALA GLY TRP SEQRES 12 A 498 CYS PRO THR VAL GLY THR GLY GLY HIS ILE SER GLY GLY SEQRES 13 A 498 GLY PHE GLY MET MET SER ARG LYS TYR GLY LEU ALA ALA SEQRES 14 A 498 ASP ASN VAL VAL ASP ALA ILE LEU ILE ASP ALA ASN GLY SEQRES 15 A 498 ALA ILE LEU ASP ARG GLN ALA MET GLY GLU ASP VAL PHE SEQRES 16 A 498 TRP ALA ILE ARG GLY GLY GLY GLY GLY VAL TRP GLY ALA SEQRES 17 A 498 ILE TYR ALA TRP LYS ILE LYS LEU LEU PRO VAL PRO GLU SEQRES 18 A 498 LYS VAL THR VAL PHE ARG VAL THR LYS ASN VAL ALA ILE SEQRES 19 A 498 ASP GLU ALA THR SER LEU LEU HIS LYS TRP GLN PHE VAL SEQRES 20 A 498 ALA GLU GLU LEU GLU GLU ASP PHE THR LEU SER VAL LEU SEQRES 21 A 498 GLY GLY ALA ASP GLU LYS GLN VAL TRP LEU THR MET LEU SEQRES 22 A 498 GLY PHE HIS PHE GLY LEU LYS THR VAL ALA LYS SER THR SEQRES 23 A 498 PHE ASP LEU LEU PHE PRO GLU LEU GLY LEU VAL GLU GLU SEQRES 24 A 498 ASP TYR LEU GLU MET SER TRP GLY GLU SER PHE ALA TYR SEQRES 25 A 498 LEU ALA GLY LEU GLU THR VAL SER GLN LEU ASN ASN ARG SEQRES 26 A 498 PHE LEU LYS PHE ASP GLU ARG ALA PHE LYS THR LYS VAL SEQRES 27 A 498 ASP LEU THR LYS GLU PRO LEU PRO SER LYS ALA PHE TYR SEQRES 28 A 498 GLY LEU LEU GLU ARG LEU SER LYS GLU PRO ASN GLY PHE SEQRES 29 A 498 ILE ALA LEU ASN GLY PHE GLY GLY GLN MET SER LYS ILE SEQRES 30 A 498 SER SER ASP PHE THR PRO PHE PRO HIS ARG SER GLY THR SEQRES 31 A 498 ARG LEU MET VAL GLU TYR ILE VAL ALA TRP ASN GLN SER SEQRES 32 A 498 GLU GLN LYS LYS LYS THR GLU PHE LEU ASP TRP LEU GLU SEQRES 33 A 498 LYS VAL TYR GLU PHE MET LYS PRO PHE VAL SER LYS ASN SEQRES 34 A 498 PRO ARG LEU GLY TYR VAL ASN HIS ILE ASP LEU ASP LEU SEQRES 35 A 498 GLY GLY ILE ASP TRP GLY ASN LYS THR VAL VAL ASN ASN SEQRES 36 A 498 ALA ILE GLU ILE SER ARG SER TRP GLY GLU SER TYR PHE SEQRES 37 A 498 LEU SER ASN TYR GLU ARG LEU ILE ARG ALA LYS THR LEU SEQRES 38 A 498 ILE ASP PRO ASN ASN VAL PHE ASN HIS PRO GLN SER ILE SEQRES 39 A 498 PRO PRO MET ALA MODRES 3FW7 ASN A 38 ASN GLYCOSYLATION SITE MODRES 3FW7 ASN A 471 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET FAD A 1 53 HET NAG A 522 14 HET MG A 523 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 MAN C6 H12 O6 FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 5 MG MG 2+ FORMUL 6 HOH *498(H2 O) HELIX 1 1 ALA A 23 ASN A 34 1 12 HELIX 2 2 SER A 48 SER A 57 1 10 HELIX 3 3 ASN A 60 GLN A 64 5 5 HELIX 4 4 SER A 79 LYS A 92 1 14 HELIX 5 5 THR A 144 SER A 156 1 13 HELIX 6 6 GLY A 170 GLY A 177 1 8 HELIX 7 7 MET A 183 GLY A 188 1 6 HELIX 8 8 LEU A 189 ASP A 192 5 4 HELIX 9 9 ASP A 208 GLY A 213 1 6 HELIX 10 10 GLY A 213 ARG A 221 1 9 HELIX 11 11 ALA A 255 LEU A 273 1 19 HELIX 12 12 LEU A 301 PHE A 313 1 13 HELIX 13 13 PRO A 314 GLY A 317 5 4 HELIX 14 14 VAL A 319 TYR A 323 5 5 HELIX 15 15 SER A 327 ALA A 336 1 10 HELIX 16 16 THR A 340 ASN A 346 5 7 HELIX 17 17 PRO A 368 LYS A 381 1 14 HELIX 18 18 GLY A 393 LYS A 398 5 6 HELIX 19 19 ASN A 423 LYS A 428 5 6 HELIX 20 20 LYS A 429 LYS A 445 1 17 HELIX 21 21 PRO A 446 VAL A 448 5 3 HELIX 22 22 TYR A 456 ILE A 460 5 5 HELIX 23 23 ASP A 461 GLY A 465 5 5 HELIX 24 24 ASN A 471 ASN A 477 1 7 HELIX 25 25 ASN A 477 LEU A 491 1 15 HELIX 26 26 ASN A 493 ASP A 505 1 13 SHEET 1 A 4 HIS A 39 VAL A 41 0 SHEET 2 A 4 ALA A 73 ILE A 75 -1 O ILE A 74 N THR A 40 SHEET 3 A 4 PHE A 117 ASP A 121 1 O LEU A 119 N ILE A 75 SHEET 4 A 4 THR A 96 ARG A 100 1 N ARG A 98 O ILE A 120 SHEET 1 B 5 VAL A 128 ASP A 131 0 SHEET 2 B 5 THR A 136 GLU A 140 -1 O TRP A 138 N SER A 129 SHEET 3 B 5 ALA A 230 LYS A 237 -1 O ILE A 236 N ALA A 137 SHEET 4 B 5 VAL A 194 ILE A 200 -1 N VAL A 195 O LYS A 235 SHEET 5 B 5 ILE A 206 LEU A 207 -1 O LEU A 207 N LEU A 199 SHEET 1 C 2 LEU A 159 GLY A 160 0 SHEET 2 C 2 LEU A 239 PRO A 240 -1 O LEU A 239 N GLY A 160 SHEET 1 D 7 LEU A 324 MET A 326 0 SHEET 2 D 7 VAL A 245 VAL A 254 -1 N VAL A 245 O MET A 326 SHEET 3 D 7 GLN A 289 HIS A 298 -1 O LEU A 292 N LYS A 252 SHEET 4 D 7 PHE A 277 ASP A 286 -1 N LEU A 282 O THR A 293 SHEET 5 D 7 GLY A 385 GLY A 391 -1 O LEU A 389 N VAL A 281 SHEET 6 D 7 LEU A 414 TRP A 422 -1 O GLU A 417 N ALA A 388 SHEET 7 D 7 ALA A 355 LEU A 362 -1 N LYS A 359 O TYR A 418 SSBOND 1 CYS A 30 CYS A 89 1555 1555 2.05 LINK C6 FAD A 1 SG CYS A 166 1555 1555 1.81 LINK ND2 ASN A 38 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 471 C1 NAG A 522 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.44 LINK O HOH A 4 MG MG A 523 1555 1555 2.45 LINK O HOH A 5 MG MG A 523 1555 1555 2.21 LINK OD1 ASP A 45 MG MG A 523 1555 1555 2.33 LINK OD1 ASP A 47 MG MG A 523 1555 1555 2.08 LINK MG MG A 523 O HOH A 524 1555 1555 1.85 LINK MG MG A 523 O HOH A 525 1555 1555 2.03 CISPEP 1 ASN A 451 PRO A 452 0 3.12 CRYST1 68.800 68.800 247.280 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004044 0.00000 MASTER 396 0 6 26 18 0 0 6 0 0 0 39 END