HEADER MEMBRANE PROTEIN 15-JAN-09 3FV1 TITLE CRYSTAL STRUCTURE OF THE HUMAN GLUTAMATE RECEPTOR, GLUR5, LIGAND- TITLE 2 BINDING CORE IN COMPLEX WITH DYSIHERBAINE IN SPACE GROUP P1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, UNP RESIDUES 445-559, 682-820; COMPND 5 SYNONYM: GLUTAMATE RECEPTOR 5, GLUR-5, GLUR5, EXCITATORY AMINO ACID COMPND 6 RECEPTOR 3, EAA3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCOLD-1 KEYWDS NATURAL COMPOUND, GLUTAMATE RECEPTOR, LIGAND, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.UNNO,M.SASAKI,M.IKEDA-SAITO REVDAT 3 16-AUG-17 3FV1 1 SOURCE REMARK REVDAT 2 26-OCT-11 3FV1 1 JRNL VERSN REVDAT 1 19-JAN-10 3FV1 0 JRNL AUTH M.UNNO,M.SHINOHARA,K.TAKAYAMA,H.TANAKA,K.TERUYA,K.DOH-URA, JRNL AUTH 2 R.SAKAI,M.SASAKI,M.IKEDA-SAITO JRNL TITL BINDING AND SELECTIVITY OF THE MARINE TOXIN NEODYSIHERBAINE JRNL TITL 2 A AND ITS SYNTHETIC ANALOGUES TO GLUK1 AND GLUK2 KAINATE JRNL TITL 3 RECEPTORS. JRNL REF J.MOL.BIOL. V. 413 667 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21893069 JRNL DOI 10.1016/J.JMB.2011.08.043 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 75397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 462 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : -0.04000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.009 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.270 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 5.563 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;29.695 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;12.710 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; 9.997 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.084 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.005 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; 0.195 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; 0.309 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; 0.115 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; 0.161 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; 0.124 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; 0.924 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; 1.080 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; 1.767 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; 2.682 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 517 REMARK 3 RESIDUE RANGE : A 750 A 790 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4070 5.1420 18.3830 REMARK 3 T TENSOR REMARK 3 T11: -0.0436 T22: -0.0352 REMARK 3 T33: -0.0037 T12: 0.0174 REMARK 3 T13: 0.0037 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.5462 L22: 0.9642 REMARK 3 L33: 0.9239 L12: 0.0178 REMARK 3 L13: -0.0103 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.0415 S12: -0.0494 S13: -0.0050 REMARK 3 S21: -0.0177 S22: 0.0225 S23: -0.0061 REMARK 3 S31: 0.0395 S32: 0.0668 S33: 0.0189 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 415 B 517 REMARK 3 RESIDUE RANGE : B 750 B 790 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5170 13.6450 -11.0190 REMARK 3 T TENSOR REMARK 3 T11: -0.0485 T22: -0.0323 REMARK 3 T33: -0.0021 T12: -0.0193 REMARK 3 T13: 0.0018 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.7467 L22: 1.0717 REMARK 3 L33: 0.8613 L12: 0.1759 REMARK 3 L13: -0.0100 L23: 0.3108 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: 0.0921 S13: 0.0193 REMARK 3 S21: -0.0115 S22: 0.0428 S23: 0.0568 REMARK 3 S31: -0.0507 S32: 0.0773 S33: 0.0338 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 522 A 746 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4730 22.0940 21.3050 REMARK 3 T TENSOR REMARK 3 T11: -0.0328 T22: -0.0289 REMARK 3 T33: -0.0137 T12: 0.0302 REMARK 3 T13: -0.0026 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.3960 L22: 1.5068 REMARK 3 L33: 0.7541 L12: -0.2585 REMARK 3 L13: -0.1332 L23: -0.1149 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: -0.0598 S13: 0.0383 REMARK 3 S21: 0.0465 S22: 0.0077 S23: 0.0525 REMARK 3 S31: -0.0690 S32: -0.1118 S33: -0.0307 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 522 B 746 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4300 -3.0930 -14.2050 REMARK 3 T TENSOR REMARK 3 T11: -0.0436 T22: -0.0203 REMARK 3 T33: -0.0087 T12: -0.0305 REMARK 3 T13: 0.0141 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.0134 L22: 1.5025 REMARK 3 L33: 0.7463 L12: -0.0665 REMARK 3 L13: 0.0592 L23: -0.0421 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0285 S13: 0.0160 REMARK 3 S21: -0.0825 S22: 0.0077 S23: 0.0415 REMARK 3 S31: 0.0672 S32: -0.1251 S33: -0.0233 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 518 A 521 REMARK 3 RESIDUE RANGE : A 747 A 749 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8520 9.8020 11.2470 REMARK 3 T TENSOR REMARK 3 T11: -0.0170 T22: -0.0196 REMARK 3 T33: 0.0236 T12: 0.0194 REMARK 3 T13: -0.0154 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.4690 L22: 3.2522 REMARK 3 L33: 1.0308 L12: -0.9857 REMARK 3 L13: -1.1219 L23: 0.0815 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: -0.0946 S13: 0.0516 REMARK 3 S21: 0.1104 S22: 0.0034 S23: 0.1303 REMARK 3 S31: -0.0241 S32: -0.0448 S33: 0.0246 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 518 B 521 REMARK 3 RESIDUE RANGE : B 747 B 749 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8730 9.2810 -4.0110 REMARK 3 T TENSOR REMARK 3 T11: -0.0229 T22: -0.0199 REMARK 3 T33: 0.0432 T12: -0.0215 REMARK 3 T13: 0.0178 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.6512 L22: 4.5002 REMARK 3 L33: 1.2674 L12: 0.9883 REMARK 3 L13: 0.8800 L23: 0.8514 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: 0.0833 S13: 0.0810 REMARK 3 S21: 0.0063 S22: 0.0005 S23: 0.2958 REMARK 3 S31: 0.0055 S32: -0.1377 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9850 15.0130 20.0080 REMARK 3 T TENSOR REMARK 3 T11: -0.0310 T22: -0.0348 REMARK 3 T33: 0.0241 T12: 0.0387 REMARK 3 T13: 0.0051 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 9.5634 L22: 3.5753 REMARK 3 L33: 5.1335 L12: 5.7366 REMARK 3 L13: -4.4758 L23: -2.0462 REMARK 3 S TENSOR REMARK 3 S11: -0.1995 S12: -0.1325 S13: 0.0421 REMARK 3 S21: -0.0911 S22: 0.2104 S23: 0.0029 REMARK 3 S31: -0.0439 S32: 0.0121 S33: -0.0109 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 2 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0290 3.9860 -12.7640 REMARK 3 T TENSOR REMARK 3 T11: -0.0531 T22: -0.0272 REMARK 3 T33: 0.0317 T12: -0.0337 REMARK 3 T13: 0.0221 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 17.2639 L22: 3.2028 REMARK 3 L33: 5.8994 L12: -6.3819 REMARK 3 L13: 7.2334 L23: -2.8474 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.2116 S13: -0.1924 REMARK 3 S21: 0.1796 S22: 0.0688 S23: 0.0125 REMARK 3 S31: 0.0812 S32: 0.0855 S33: -0.0625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79411 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19300 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2ZNT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG3350, 0.3M LISO4, 5MM REMARK 280 DYSIHERBAINE, PH5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 785 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 787 CG OD1 ND2 REMARK 470 LYS B 434 CG CD CE NZ REMARK 470 LYS B 437 CG CD CE NZ REMARK 470 ARG B 785 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 787 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 697 O - C - N ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 426 113.93 -164.10 REMARK 500 THR A 700 -62.06 -103.90 REMARK 500 GLU B 426 112.27 -163.02 REMARK 500 ARG B 785 -141.02 54.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DYH A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 791 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DYH B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 791 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZNS RELATED DB: PDB REMARK 900 SAME PROTEIN IN DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 2ZNT RELATED DB: PDB REMARK 900 SAME PROTEIN IN DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 2ZNU RELATED DB: PDB REMARK 900 SAME PROTEIN IN DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 3FUZ RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FV2 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FVG RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FVK RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FVN RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FVO RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND DBREF 3FV1 A 415 529 UNP P39086 GRIK1_HUMAN 445 559 DBREF 3FV1 A 652 790 UNP P39086 GRIK1_HUMAN 682 820 DBREF 3FV1 B 415 529 UNP P39086 GRIK1_HUMAN 445 559 DBREF 3FV1 B 652 790 UNP P39086 GRIK1_HUMAN 682 820 SEQADV 3FV1 GLY A 600 UNP P39086 LINKER SEQADV 3FV1 THR A 601 UNP P39086 LINKER SEQADV 3FV1 GLY B 600 UNP P39086 LINKER SEQADV 3FV1 THR B 601 UNP P39086 LINKER SEQRES 1 A 256 ALA ASN ARG THR LEU ILE VAL THR THR ILE LEU GLU GLU SEQRES 2 A 256 PRO TYR VAL MET TYR ARG LYS SER ASP LYS PRO LEU TYR SEQRES 3 A 256 GLY ASN ASP ARG PHE GLU GLY TYR CYS LEU ASP LEU LEU SEQRES 4 A 256 LYS GLU LEU SER ASN ILE LEU GLY PHE ILE TYR ASP VAL SEQRES 5 A 256 LYS LEU VAL PRO ASP GLY LYS TYR GLY ALA GLN ASN ASP SEQRES 6 A 256 LYS GLY GLU TRP ASN GLY MET VAL LYS GLU LEU ILE ASP SEQRES 7 A 256 HIS ARG ALA ASP LEU ALA VAL ALA PRO LEU THR ILE THR SEQRES 8 A 256 TYR VAL ARG GLU LYS VAL ILE ASP PHE SER LYS PRO PHE SEQRES 9 A 256 MET THR LEU GLY ILE SER ILE LEU TYR ARG LYS GLY THR SEQRES 10 A 256 PRO ILE ASP SER ALA ASP ASP LEU ALA LYS GLN THR LYS SEQRES 11 A 256 ILE GLU TYR GLY ALA VAL ARG ASP GLY SER THR MET THR SEQRES 12 A 256 PHE PHE LYS LYS SER LYS ILE SER THR TYR GLU LYS MET SEQRES 13 A 256 TRP ALA PHE MET SER SER ARG GLN GLN THR ALA LEU VAL SEQRES 14 A 256 ARG ASN SER ASP GLU GLY ILE GLN ARG VAL LEU THR THR SEQRES 15 A 256 ASP TYR ALA LEU LEU MET GLU SER THR SER ILE GLU TYR SEQRES 16 A 256 VAL THR GLN ARG ASN CYS ASN LEU THR GLN ILE GLY GLY SEQRES 17 A 256 LEU ILE ASP SER LYS GLY TYR GLY VAL GLY THR PRO ILE SEQRES 18 A 256 GLY SER PRO TYR ARG ASP LYS ILE THR ILE ALA ILE LEU SEQRES 19 A 256 GLN LEU GLN GLU GLU GLY LYS LEU HIS MET MET LYS GLU SEQRES 20 A 256 LYS TRP TRP ARG GLY ASN GLY CYS PRO SEQRES 1 B 256 ALA ASN ARG THR LEU ILE VAL THR THR ILE LEU GLU GLU SEQRES 2 B 256 PRO TYR VAL MET TYR ARG LYS SER ASP LYS PRO LEU TYR SEQRES 3 B 256 GLY ASN ASP ARG PHE GLU GLY TYR CYS LEU ASP LEU LEU SEQRES 4 B 256 LYS GLU LEU SER ASN ILE LEU GLY PHE ILE TYR ASP VAL SEQRES 5 B 256 LYS LEU VAL PRO ASP GLY LYS TYR GLY ALA GLN ASN ASP SEQRES 6 B 256 LYS GLY GLU TRP ASN GLY MET VAL LYS GLU LEU ILE ASP SEQRES 7 B 256 HIS ARG ALA ASP LEU ALA VAL ALA PRO LEU THR ILE THR SEQRES 8 B 256 TYR VAL ARG GLU LYS VAL ILE ASP PHE SER LYS PRO PHE SEQRES 9 B 256 MET THR LEU GLY ILE SER ILE LEU TYR ARG LYS GLY THR SEQRES 10 B 256 PRO ILE ASP SER ALA ASP ASP LEU ALA LYS GLN THR LYS SEQRES 11 B 256 ILE GLU TYR GLY ALA VAL ARG ASP GLY SER THR MET THR SEQRES 12 B 256 PHE PHE LYS LYS SER LYS ILE SER THR TYR GLU LYS MET SEQRES 13 B 256 TRP ALA PHE MET SER SER ARG GLN GLN THR ALA LEU VAL SEQRES 14 B 256 ARG ASN SER ASP GLU GLY ILE GLN ARG VAL LEU THR THR SEQRES 15 B 256 ASP TYR ALA LEU LEU MET GLU SER THR SER ILE GLU TYR SEQRES 16 B 256 VAL THR GLN ARG ASN CYS ASN LEU THR GLN ILE GLY GLY SEQRES 17 B 256 LEU ILE ASP SER LYS GLY TYR GLY VAL GLY THR PRO ILE SEQRES 18 B 256 GLY SER PRO TYR ARG ASP LYS ILE THR ILE ALA ILE LEU SEQRES 19 B 256 GLN LEU GLN GLU GLU GLY LYS LEU HIS MET MET LYS GLU SEQRES 20 B 256 LYS TRP TRP ARG GLY ASN GLY CYS PRO HET DYH A 1 21 HET SO4 A 791 5 HET SO4 A 3 5 HET SO4 A 4 5 HET SO4 A 5 5 HET GOL B 801 6 HET GOL B 802 6 HET GOL B 803 6 HET DYH B 2 21 HET SO4 B 791 5 HETNAM DYH (2R,3AR,6S,7R,7AR)-2-[(2S)-2-AMINO-2-CARBOXYETHYL]-6- HETNAM 2 DYH HYDROXY-7-(METHYLAMINO)HEXAHYDRO-2H-FURO[3,2-B]PYRAN- HETNAM 3 DYH 2-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 DYH 2(C12 H20 N2 O7) FORMUL 4 SO4 5(O4 S 2-) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 13 HOH *462(H2 O) HELIX 1 1 TYR A 440 ASP A 443 5 4 HELIX 2 2 GLY A 447 GLY A 461 1 15 HELIX 3 3 ASN A 484 ASP A 492 1 9 HELIX 4 4 THR A 505 LYS A 510 1 6 HELIX 5 5 SER A 655 GLN A 662 1 8 HELIX 6 6 GLY A 673 SER A 682 1 10 HELIX 7 7 ILE A 684 ARG A 697 1 14 HELIX 8 8 ARG A 697 LEU A 702 1 6 HELIX 9 9 ASN A 705 THR A 716 1 12 HELIX 10 10 SER A 724 GLN A 732 1 9 HELIX 11 11 TYR A 759 GLU A 773 1 15 HELIX 12 12 GLY A 774 ARG A 785 1 12 HELIX 13 13 TYR B 440 ASP B 443 5 4 HELIX 14 14 GLY B 447 GLY B 461 1 15 HELIX 15 15 ASN B 484 ASP B 492 1 9 HELIX 16 16 THR B 505 LYS B 510 1 6 HELIX 17 17 SER B 655 GLN B 662 1 8 HELIX 18 18 GLY B 673 SER B 682 1 10 HELIX 19 19 ILE B 684 ARG B 697 1 14 HELIX 20 20 ARG B 697 ALA B 701 1 5 HELIX 21 21 ASN B 705 THR B 716 1 12 HELIX 22 22 SER B 724 GLN B 732 1 9 HELIX 23 23 TYR B 759 GLU B 773 1 15 HELIX 24 24 GLY B 774 ARG B 785 1 12 SHEET 1 A 3 TYR A 464 LEU A 468 0 SHEET 2 A 3 LEU A 419 THR A 423 1 N VAL A 421 O LYS A 467 SHEET 3 A 3 LEU A 497 ALA A 498 1 O LEU A 497 N THR A 422 SHEET 1 B 2 MET A 431 TYR A 432 0 SHEET 2 B 2 PHE A 445 GLU A 446 -1 O GLU A 446 N MET A 431 SHEET 1 C 2 ILE A 512 PHE A 514 0 SHEET 2 C 2 GLY A 752 PRO A 754 -1 O THR A 753 N ASP A 513 SHEET 1 D 2 MET A 519 LEU A 521 0 SHEET 2 D 2 LYS A 747 TYR A 749 -1 O LYS A 747 N LEU A 521 SHEET 1 E 4 GLU A 666 GLY A 668 0 SHEET 2 E 4 TYR A 718 GLU A 723 1 O LEU A 721 N GLY A 668 SHEET 3 E 4 ILE A 523 ARG A 528 -1 N LEU A 526 O LEU A 720 SHEET 4 E 4 LEU A 737 ILE A 740 -1 O THR A 738 N TYR A 527 SHEET 1 F 3 TYR B 464 LEU B 468 0 SHEET 2 F 3 LEU B 419 THR B 423 1 N VAL B 421 O LYS B 467 SHEET 3 F 3 LEU B 497 ALA B 498 1 O LEU B 497 N THR B 422 SHEET 1 G 2 MET B 431 TYR B 432 0 SHEET 2 G 2 PHE B 445 GLU B 446 -1 O GLU B 446 N MET B 431 SHEET 1 H 2 ILE B 512 PHE B 514 0 SHEET 2 H 2 GLY B 752 PRO B 754 -1 O THR B 753 N ASP B 513 SHEET 1 I 2 MET B 519 LEU B 521 0 SHEET 2 I 2 LYS B 747 TYR B 749 -1 O TYR B 749 N MET B 519 SHEET 1 J 5 LEU B 702 VAL B 703 0 SHEET 2 J 5 GLU B 666 VAL B 670 1 N ALA B 669 O VAL B 703 SHEET 3 J 5 TYR B 718 GLU B 723 1 O LEU B 721 N GLY B 668 SHEET 4 J 5 ILE B 523 ARG B 528 -1 N LEU B 526 O LEU B 720 SHEET 5 J 5 LEU B 737 ILE B 740 -1 O ILE B 740 N ILE B 525 SSBOND 1 CYS A 735 CYS A 789 1555 1555 2.04 SSBOND 2 CYS B 735 CYS B 789 1555 1555 2.03 CISPEP 1 GLU A 427 PRO A 428 0 -4.52 CISPEP 2 GLY A 786 ASN A 787 0 -4.55 CISPEP 3 GLU B 427 PRO B 428 0 -5.53 SITE 1 AC1 17 HOH A 26 GLU A 426 TYR A 474 PRO A 501 SITE 2 AC1 17 LEU A 502 THR A 503 ARG A 508 VAL A 670 SITE 3 AC1 17 GLY A 673 SER A 674 THR A 675 SER A 706 SITE 4 AC1 17 MET A 722 GLU A 723 SER A 726 TYR A 749 SITE 5 AC1 17 HOH A 794 SITE 1 AC2 7 HOH A 63 HOH A 128 HOH A 134 ARG A 444 SITE 2 AC2 7 LYS A 467 LEU A 468 ARG B 704 SITE 1 AC3 2 ARG A 417 TYR A 759 SITE 1 AC4 4 HOH A 166 HOH A 218 LYS A 664 LYS A 782 SITE 1 AC5 6 HOH A 62 HOH A 119 ASP A 657 ILE A 684 SITE 2 AC5 6 THR A 686 TYR A 687 SITE 1 AC6 7 HOH B 181 HOH B 311 ARG B 671 ASP B 672 SITE 2 AC6 7 MET B 676 LYS B 680 TRP B 691 SITE 1 AC7 9 HOH B 83 HOH B 84 HOH B 167 LYS B 454 SITE 2 AC7 9 TYR B 464 ALA B 660 LYS B 661 THR B 663 SITE 3 AC7 9 LYS B 689 SITE 1 AC8 5 HOH B 171 HOH B 312 ASP B 657 THR B 686 SITE 2 AC8 5 TYR B 687 SITE 1 AC9 17 HOH B 6 HOH B 8 GLU B 426 TYR B 474 SITE 2 AC9 17 PRO B 501 LEU B 502 THR B 503 ARG B 508 SITE 3 AC9 17 VAL B 670 GLY B 673 SER B 674 THR B 675 SITE 4 AC9 17 SER B 706 MET B 722 GLU B 723 SER B 726 SITE 5 AC9 17 TYR B 749 SITE 1 BC1 5 HOH B 344 ARG B 444 VAL B 466 LYS B 467 SITE 2 BC1 5 LEU B 468 CRYST1 47.486 50.740 63.252 80.08 84.18 62.06 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021059 -0.011167 -0.000568 0.00000 SCALE2 0.000000 0.022308 -0.003198 0.00000 SCALE3 0.000000 0.000000 0.016054 0.00000 MASTER 501 0 10 24 27 0 25 6 0 0 0 40 END