HEADER IMMUNE SYSTEM 07-JAN-09 3FQX TITLE PHOSPHORYLATION OF SELF-PEPTIDES ALTERS HUMAN LEUKOCYTE ANTIGEN CLASS TITLE 2 I-RESTRICTED ANTIGEN PRESENTATION AND GENERATES TUMOR SPECIFIC TITLE 3 EPITOPES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS ALPHA1, ALPHA2, ALPHA3, UNP RESIDUES COMPND 5 25-299; COMPND 6 SYNONYM: MHC CLASS I ANTIGEN A*2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PHOSPHO-PEPTIDE 1097-1105 FROM INSULIN RECEPTOR SUBSTRATE 2 COMPND 14 (IRS2): RVA(SEP)PTSGV; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 30; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET 30; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS IMMUNE SYSTEM, PHOSPHORYLATION, GLYCOPROTEIN, IMMUNE RESPONSE, KEYWDS 2 MEMBRANE, MHC I, PHOSPHOPROTEIN, TRANSMEMBRANE, DISEASE MUTATION, KEYWDS 3 IMMUNOGLOBULIN DOMAIN, PYRROLIDONE CARBOXYLIC ACID, SECRETED, KEYWDS 4 CANCER, TCR, SELF-EPITOPE EXPDTA X-RAY DIFFRACTION AUTHOR J.PETERSEN,J.ROSSJOHN REVDAT 4 01-NOV-17 3FQX 1 REMARK REVDAT 3 13-JUL-11 3FQX 1 VERSN REVDAT 2 10-MAR-09 3FQX 1 JRNL REVDAT 1 03-MAR-09 3FQX 0 JRNL AUTH J.PETERSEN,S.J.WURZBACHER,N.A.WILLIAMSON,S.H.RAMARATHINAM, JRNL AUTH 2 H.H.REID,A.K.NAIR,A.Y.ZHAO,R.NASTOVSKA,G.RUDGE,J.ROSSJOHN, JRNL AUTH 3 A.W.PURCELL JRNL TITL PHOSPHORYLATED SELF-PEPTIDES ALTER HUMAN LEUKOCYTE ANTIGEN JRNL TITL 2 CLASS I-RESTRICTED ANTIGEN PRESENTATION AND GENERATE JRNL TITL 3 TUMOR-SPECIFIC EPITOPES JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2776 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196958 JRNL DOI 10.1073/PNAS.0812901106 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 56258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0070 - 4.6050 0.98 2963 153 0.1730 0.1870 REMARK 3 2 4.6050 - 3.6600 0.98 2839 147 0.1380 0.1480 REMARK 3 3 3.6600 - 3.1980 0.99 2809 159 0.1600 0.1990 REMARK 3 4 3.1980 - 2.9060 0.99 2813 156 0.1690 0.1870 REMARK 3 5 2.9060 - 2.6980 0.99 2763 158 0.1770 0.2050 REMARK 3 6 2.6980 - 2.5390 0.99 2775 156 0.1710 0.2060 REMARK 3 7 2.5390 - 2.4120 0.99 2811 114 0.1700 0.2090 REMARK 3 8 2.4120 - 2.3070 0.99 2752 153 0.1680 0.1940 REMARK 3 9 2.3070 - 2.2190 0.98 2712 157 0.1600 0.2180 REMARK 3 10 2.2190 - 2.1420 0.98 2749 130 0.1670 0.2100 REMARK 3 11 2.1420 - 2.0750 0.97 2725 128 0.1700 0.2090 REMARK 3 12 2.0750 - 2.0160 0.97 2704 138 0.1610 0.1900 REMARK 3 13 2.0160 - 1.9630 0.97 2699 149 0.1580 0.1820 REMARK 3 14 1.9630 - 1.9150 0.97 2672 141 0.1610 0.2080 REMARK 3 15 1.9150 - 1.8720 0.97 2687 136 0.1700 0.1930 REMARK 3 16 1.8720 - 1.8320 0.96 2662 150 0.1690 0.1920 REMARK 3 17 1.8320 - 1.7950 0.96 2666 130 0.1670 0.2070 REMARK 3 18 1.7950 - 1.7610 0.94 2589 130 0.1800 0.2280 REMARK 3 19 1.7610 - 1.7300 0.79 2190 116 0.1880 0.2130 REMARK 3 20 1.7300 - 1.7000 0.68 1889 88 0.2040 0.2770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 51.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.03200 REMARK 3 B22 (A**2) : -0.24800 REMARK 3 B33 (A**2) : -4.78400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3314 REMARK 3 ANGLE : 1.010 4522 REMARK 3 CHIRALITY : 0.073 463 REMARK 3 PLANARITY : 0.004 595 REMARK 3 DIHEDRAL : 16.021 1211 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1-181) OR CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 6.3688 -11.9019 -42.3549 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.1501 REMARK 3 T33: 0.2231 T12: -0.0044 REMARK 3 T13: -0.0128 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.5151 L22: 0.6492 REMARK 3 L33: 0.5826 L12: -0.2142 REMARK 3 L13: 0.0246 L23: -0.0246 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.0388 S13: -0.0076 REMARK 3 S21: -0.0486 S22: -0.0179 S23: 0.0750 REMARK 3 S31: -0.0138 S32: 0.0002 S33: 0.0565 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 182-275) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6287 14.6250 -20.9378 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.2221 REMARK 3 T33: 0.2541 T12: -0.0149 REMARK 3 T13: -0.0023 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.3975 L22: 0.4616 REMARK 3 L33: 0.4820 L12: 0.2287 REMARK 3 L13: 0.0240 L23: 0.2269 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: 0.1107 S13: -0.0007 REMARK 3 S21: -0.0506 S22: 0.0246 S23: -0.0618 REMARK 3 S31: -0.0480 S32: 0.1654 S33: 0.0229 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 7.8331 -4.6012 -15.8647 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.1670 REMARK 3 T33: 0.2238 T12: 0.0249 REMARK 3 T13: 0.0002 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.4353 L22: 0.9028 REMARK 3 L33: 1.1444 L12: 0.2325 REMARK 3 L13: -0.0877 L23: 0.9379 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: -0.0600 S13: -0.0390 REMARK 3 S21: 0.2053 S22: 0.0195 S23: -0.0467 REMARK 3 S31: 0.1337 S32: 0.0460 S33: -0.0095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0830 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG3350, 5MM CDCL2, 5MM MGCL2, REMARK 280 0.1M NACL, PH7.4, TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.92300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.49850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.84200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.49850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.92300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.84200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 133.21 -177.94 REMARK 500 ASP A 29 -126.50 50.19 REMARK 500 TYR A 123 -70.25 -117.87 REMARK 500 ASN B 20 -168.84 -160.12 REMARK 500 TRP B 59 -4.61 76.73 REMARK 500 SER C 7 153.72 -48.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 277 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 1 N REMARK 620 2 HIS A 3 NE2 134.0 REMARK 620 3 HOH A 398 O 136.4 86.3 REMARK 620 4 HOH A 487 O 102.7 94.5 86.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 279 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 ASP A 30 OD2 51.3 REMARK 620 3 HOH A 415 O 85.0 99.1 REMARK 620 4 HOH A 346 O 124.7 77.2 126.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 276 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 O REMARK 620 2 HIS A 191 ND1 84.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 278 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 197 ND1 REMARK 620 2 HOH A 301 O 93.7 REMARK 620 3 HOH A 361 O 173.4 85.1 REMARK 620 4 HOH A 552 O 111.1 84.9 75.3 REMARK 620 5 HOH A 500 O 81.9 88.2 91.5 165.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 99 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 50 NE2 REMARK 620 2 HOH A 345 O 92.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 99 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FQN RELATED DB: PDB REMARK 900 RELATED ID: 3FQR RELATED DB: PDB REMARK 900 RELATED ID: 3FQT RELATED DB: PDB REMARK 900 RELATED ID: 3FQU RELATED DB: PDB REMARK 900 RELATED ID: 3FQW RELATED DB: PDB DBREF 3FQX A 1 275 UNP P01892 1A02_HUMAN 25 299 DBREF 3FQX B 1 98 UNP P61769 B2MG_HUMAN 22 119 DBREF 3FQX C 1 9 PDB 3FQX 3FQX 1 9 SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 98 GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS PRO SEQRES 2 B 98 ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR VAL SEQRES 3 B 98 SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU LEU SEQRES 4 B 98 LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER ASP SEQRES 5 B 98 LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU TYR SEQRES 6 B 98 TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR ALA SEQRES 7 B 98 CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS ILE SEQRES 8 B 98 VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 ARG VAL ALA SEP PRO THR SER GLY VAL MODRES 3FQX SEP C 4 SER PHOSPHOSERINE HET SEP C 4 20 HET CD A 276 1 HET CD A 277 1 HET CD A 278 1 HET CD A 279 1 HET MG A 280 1 HET GOL A 281 6 HET CD B 99 1 HET MG B 100 1 HET GOL B 101 6 HETNAM SEP PHOSPHOSERINE HETNAM CD CADMIUM ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 CD 5(CD 2+) FORMUL 8 MG 2(MG 2+) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 13 HOH *413(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 HIS A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 GLN A 180 1 6 HELIX 7 7 GLN A 253 GLN A 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 A 8 PHE A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 A 8 LYS A 121 LEU A 126 -1 O LEU A 126 N HIS A 114 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 ALA A 193 0 SHEET 2 B 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 ALA A 193 0 SHEET 2 C 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 GLN A 224 0 SHEET 2 D 4 THR A 214 ARG A 219 -1 N TRP A 217 O GLN A 224 SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 D 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 5 SER B 10 0 SHEET 2 E 4 ASN B 20 PHE B 29 -1 O SER B 27 N LYS B 5 SHEET 3 E 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 22 SHEET 4 E 4 GLU B 49 HIS B 50 -1 N GLU B 49 O TYR B 66 SHEET 1 F 4 LYS B 5 SER B 10 0 SHEET 2 F 4 ASN B 20 PHE B 29 -1 O SER B 27 N LYS B 5 SHEET 3 F 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 22 SHEET 4 F 4 SER B 54 PHE B 55 -1 N SER B 54 O TYR B 62 SHEET 1 G 4 GLU B 43 ARG B 44 0 SHEET 2 G 4 GLU B 35 LYS B 40 -1 N LYS B 40 O GLU B 43 SHEET 3 G 4 TYR B 77 ASN B 82 -1 O ALA B 78 N LEU B 39 SHEET 4 G 4 LYS B 90 LYS B 93 -1 O LYS B 90 N VAL B 81 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.03 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 24 CYS B 79 1555 1555 2.05 LINK C ALA C 3 N ASEP C 4 1555 1555 1.33 LINK C ALA C 3 N BSEP C 4 1555 1555 1.33 LINK C ASEP C 4 N PRO C 5 1555 1555 1.34 LINK C BSEP C 4 N PRO C 5 1555 1555 1.34 LINK N GLY A 1 CD CD A 277 1555 1555 2.41 LINK NE2 HIS A 3 CD CD A 277 1555 1555 2.32 LINK OD1 ASP A 30 CD CD A 279 1555 1555 2.53 LINK OD2 ASP A 30 CD CD A 279 1555 1555 2.53 LINK O HIS A 191 CD CD A 276 1555 1555 2.49 LINK ND1 HIS A 191 CD CD A 276 1555 1555 2.30 LINK ND1 HIS A 197 CD CD A 278 1555 1555 2.59 LINK NE2 HIS B 50 CD CD B 99 1555 1555 2.34 LINK CD CD A 277 O HOH A 398 1555 1555 2.36 LINK CD CD A 277 O HOH A 487 1555 1555 2.41 LINK CD CD A 278 O HOH A 301 1555 1555 2.43 LINK CD CD A 278 O HOH A 361 1555 1555 2.26 LINK CD CD A 278 O HOH A 552 1555 1555 2.18 LINK CD CD A 278 O HOH A 500 1555 1555 2.51 LINK CD CD A 279 O HOH A 415 1555 1555 2.31 LINK CD CD A 279 O HOH A 346 1555 1555 2.05 LINK MG MG A 280 O HOH A 369 1555 1555 2.36 LINK CD CD B 99 O HOH A 345 1555 1555 2.45 CISPEP 1 TYR A 209 PRO A 210 0 4.27 CISPEP 2 HIS B 30 PRO B 31 0 2.40 SITE 1 AC1 4 HIS A 151 GLU A 154 HIS A 191 HOH A 322 SITE 1 AC2 5 GLY A 1 HIS A 3 HOH A 398 HOH A 414 SITE 2 AC2 5 HOH A 487 SITE 1 AC3 6 HIS A 145 HIS A 197 HOH A 301 HOH A 361 SITE 2 AC3 6 HOH A 500 HOH A 552 SITE 1 AC4 4 ASP A 30 HOH A 346 HOH A 415 HOH A 416 SITE 1 AC5 2 GLU A 154 HOH A 369 SITE 1 AC6 7 ARG A 6 ASP A 29 ASP A 30 HOH A 335 SITE 2 AC6 7 HOH A 433 TYR B 62 HOH B 142 SITE 1 AC7 3 HOH A 345 HIS B 50 HOH B 418 SITE 1 AC8 5 ASN B 82 HIS B 83 LEU B 86 HOH B 359 SITE 2 AC8 5 HOH B 360 SITE 1 AC9 5 SER B 32 ASP B 33 HOH B 113 HOH B 147 SITE 2 AC9 5 HOH B 194 CRYST1 59.846 79.684 110.997 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016710 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009009 0.00000 MASTER 380 0 10 7 32 0 14 6 0 0 0 31 END