HEADER TRANSFERASE 03-DEC-08 3FFH TITLE THE CRYSTAL STRUCTURE OF HISTIDINOL-PHOSPHATE AMINOTRANSFERASE FROM TITLE 2 LISTERIA INNOCUA CLIP11262. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINOL-PHOSPHATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IMIDAZOLE ACETOL-PHOSPHATE TRANSAMINASE; COMPND 5 EC: 2.6.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA; SOURCE 3 ORGANISM_TAXID: 1642; SOURCE 4 STRAIN: CLIP11262; SOURCE 5 GENE: HISC, LIN2039, LISTERIA INNOCUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC88260, HISTIDINOL-PHOSPHATE AMINOTRANSFERASE, LISTERIA INNOCUA KEYWDS 2 CLIP11262, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, AMINO-ACID KEYWDS 4 BIOSYNTHESIS, AMINOTRANSFERASE, HISTIDINE BIOSYNTHESIS, PYRIDOXAL KEYWDS 5 PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.GU,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 13-JUL-11 3FFH 1 VERSN REVDAT 1 23-DEC-08 3FFH 0 JRNL AUTH K.TAN,M.GU,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF HISTIDINOL-PHOSPHATE JRNL TITL 2 AMINOTRANSFERASE FROM LISTERIA INNOCUA CLIP11262. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 32731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1813 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.371 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5631 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7632 ; 1.472 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 6.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;40.141 ;25.265 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1020 ;20.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 898 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4120 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3509 ; 0.982 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5677 ; 1.700 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2122 ; 1.168 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1955 ; 1.869 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 67.0189 82.4412 86.1322 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.3333 REMARK 3 T33: 0.2537 T12: 0.0245 REMARK 3 T13: 0.1360 T23: 0.1375 REMARK 3 L TENSOR REMARK 3 L11: 5.0835 L22: 10.0015 REMARK 3 L33: 6.5030 L12: -0.1148 REMARK 3 L13: 0.9205 L23: -2.2207 REMARK 3 S TENSOR REMARK 3 S11: -0.1346 S12: 0.4386 S13: -0.2679 REMARK 3 S21: 0.2936 S22: -0.3104 S23: -0.1989 REMARK 3 S31: 0.1344 S32: 1.0714 S33: 0.4450 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 72.0483 84.2886 114.9161 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0524 REMARK 3 T33: 0.0101 T12: -0.0054 REMARK 3 T13: -0.0141 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.7612 L22: 1.4174 REMARK 3 L33: 1.7891 L12: -0.8325 REMARK 3 L13: 0.1484 L23: -0.7059 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: -0.0170 S13: -0.0581 REMARK 3 S21: -0.0871 S22: 0.0823 S23: 0.0750 REMARK 3 S31: 0.0675 S32: -0.1522 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5801 95.3797 100.6420 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1690 REMARK 3 T33: 0.1520 T12: 0.0596 REMARK 3 T13: 0.0181 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 4.3684 L22: 10.2715 REMARK 3 L33: 9.2801 L12: 2.0606 REMARK 3 L13: -0.7441 L23: 1.5771 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.1896 S13: 0.0687 REMARK 3 S21: 0.0805 S22: -0.1054 S23: 0.3893 REMARK 3 S31: 0.3711 S32: -0.4349 S33: 0.0582 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3637 67.9998 96.1153 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.0563 REMARK 3 T33: 0.0207 T12: 0.0108 REMARK 3 T13: -0.0147 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.8462 L22: 1.9582 REMARK 3 L33: 1.4107 L12: 0.5297 REMARK 3 L13: -0.8461 L23: -0.9218 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.1569 S13: -0.0587 REMARK 3 S21: 0.1177 S22: -0.0953 S23: -0.1974 REMARK 3 S31: 0.0043 S32: 0.2308 S33: 0.0958 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-08. REMARK 100 THE RCSB ID CODE IS RCSB050525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGSO4 20% PEG4000 10% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.22800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.38650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.83550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.38650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.22800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.83550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAINS A AND B MAY FORM A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 TYR A 13 REMARK 465 LYS A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 PRO A 62 REMARK 465 ASP A 63 REMARK 465 GLY A 64 REMARK 465 TRP A 65 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 SER B 12 REMARK 465 TYR B 13 REMARK 465 LYS B 14 REMARK 465 PRO B 15 REMARK 465 GLY B 16 REMARK 465 LYS B 17 REMARK 465 ASP B 63 REMARK 465 GLY B 64 REMARK 465 TRP B 65 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 251 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 251 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 250 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 -75.81 -73.44 REMARK 500 GLU A 25 41.71 -73.89 REMARK 500 LEU A 26 -44.06 -169.67 REMARK 500 SER A 183 7.02 -66.31 REMARK 500 GLU A 202 145.78 -37.61 REMARK 500 HIS A 204 19.47 -140.25 REMARK 500 LYS A 222 -100.71 -103.92 REMARK 500 ASN A 252 -66.85 -134.66 REMARK 500 LYS B 2 62.21 -103.22 REMARK 500 GLU B 21 -74.92 -50.97 REMARK 500 THR B 29 -109.65 -78.89 REMARK 500 ASN B 37 35.87 -96.22 REMARK 500 SER B 44 152.23 -46.89 REMARK 500 VAL B 56 32.85 -72.00 REMARK 500 HIS B 204 25.79 -140.29 REMARK 500 LEU B 207 -36.29 -32.03 REMARK 500 LYS B 222 -102.15 -93.47 REMARK 500 SER B 228 -98.17 -37.33 REMARK 500 PRO B 250 -21.70 -38.84 REMARK 500 ASN B 252 -94.91 -133.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 365 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC88260 RELATED DB: TARGETDB DBREF 3FFH A 1 360 UNP Q92A83 HIS8_LISIN 1 360 DBREF 3FFH B 1 360 UNP Q92A83 HIS8_LISIN 1 360 SEQADV 3FFH SER A -2 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH ASN A -1 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH ALA A 0 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH SER B -2 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH ASN B -1 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH ALA B 0 UNP Q92A83 EXPRESSION TAG SEQRES 1 A 363 SER ASN ALA MSE LYS TRP LYS LYS SER LEU ALA GLY LEU SEQRES 2 A 363 SER SER TYR LYS PRO GLY LYS ARG GLU GLU GLU VAL MSE SEQRES 3 A 363 ALA GLU LEU GLY LEU THR LYS ILE THR LYS LEU SER SER SEQRES 4 A 363 ASN GLU ASN PRO LEU GLY THR SER LYS LYS VAL ALA ALA SEQRES 5 A 363 ILE GLN ALA ASN SER SER VAL GLU THR GLU ILE TYR PRO SEQRES 6 A 363 ASP GLY TRP ALA SER SER LEU ARG LYS GLU VAL ALA ASP SEQRES 7 A 363 PHE TYR GLN LEU GLU GLU GLU GLU LEU ILE PHE THR ALA SEQRES 8 A 363 GLY VAL ASP GLU LEU ILE GLU LEU LEU THR ARG VAL LEU SEQRES 9 A 363 LEU ASP THR THR THR ASN THR VAL MSE ALA THR PRO THR SEQRES 10 A 363 PHE VAL GLN TYR ARG GLN ASN ALA LEU ILE GLU GLY ALA SEQRES 11 A 363 GLU VAL ARG GLU ILE PRO LEU LEU GLN ASP GLY GLU HIS SEQRES 12 A 363 ASP LEU GLU GLY MSE LEU ASN ALA ILE ASP GLU LYS THR SEQRES 13 A 363 THR ILE VAL TRP ILE CYS ASN PRO ASN ASN PRO THR GLY SEQRES 14 A 363 ASN TYR ILE GLU LEU ALA ASP ILE GLN ALA PHE LEU ASP SEQRES 15 A 363 ARG VAL PRO SER ASP VAL LEU VAL VAL LEU ASP GLU ALA SEQRES 16 A 363 TYR ILE GLU TYR VAL THR PRO GLN PRO GLU LYS HIS GLU SEQRES 17 A 363 LYS LEU VAL ARG THR TYR LYS ASN LEU ILE ILE THR ARG SEQRES 18 A 363 THR PHE SER LYS ILE TYR GLY LEU ALA SER ALA ARG VAL SEQRES 19 A 363 GLY TYR GLY ILE ALA ASP LYS GLU ILE ILE ARG GLN LEU SEQRES 20 A 363 ASN ILE VAL ARG PRO PRO PHE ASN THR THR SER ILE GLY SEQRES 21 A 363 GLN LYS LEU ALA ILE GLU ALA ILE LYS ASP GLN ALA PHE SEQRES 22 A 363 ILE GLY GLU CYS ARG THR SER ASN ALA ASN GLY ILE LYS SEQRES 23 A 363 GLN TYR GLU ALA PHE ALA LYS ARG PHE GLU LYS VAL LYS SEQRES 24 A 363 LEU TYR PRO ALA ASN GLY ASN PHE VAL LEU ILE ASP LEU SEQRES 25 A 363 GLY ILE GLU ALA GLY THR ILE PHE SER TYR LEU GLU LYS SEQRES 26 A 363 ASN GLY TYR ILE THR ARG SER GLY ALA ALA LEU GLY PHE SEQRES 27 A 363 PRO THR ALA VAL ARG ILE THR ILE GLY LYS GLU GLU ASP SEQRES 28 A 363 ASN SER ALA VAL ILE ALA LEU LEU GLU LYS LEU LEU SEQRES 1 B 363 SER ASN ALA MSE LYS TRP LYS LYS SER LEU ALA GLY LEU SEQRES 2 B 363 SER SER TYR LYS PRO GLY LYS ARG GLU GLU GLU VAL MSE SEQRES 3 B 363 ALA GLU LEU GLY LEU THR LYS ILE THR LYS LEU SER SER SEQRES 4 B 363 ASN GLU ASN PRO LEU GLY THR SER LYS LYS VAL ALA ALA SEQRES 5 B 363 ILE GLN ALA ASN SER SER VAL GLU THR GLU ILE TYR PRO SEQRES 6 B 363 ASP GLY TRP ALA SER SER LEU ARG LYS GLU VAL ALA ASP SEQRES 7 B 363 PHE TYR GLN LEU GLU GLU GLU GLU LEU ILE PHE THR ALA SEQRES 8 B 363 GLY VAL ASP GLU LEU ILE GLU LEU LEU THR ARG VAL LEU SEQRES 9 B 363 LEU ASP THR THR THR ASN THR VAL MSE ALA THR PRO THR SEQRES 10 B 363 PHE VAL GLN TYR ARG GLN ASN ALA LEU ILE GLU GLY ALA SEQRES 11 B 363 GLU VAL ARG GLU ILE PRO LEU LEU GLN ASP GLY GLU HIS SEQRES 12 B 363 ASP LEU GLU GLY MSE LEU ASN ALA ILE ASP GLU LYS THR SEQRES 13 B 363 THR ILE VAL TRP ILE CYS ASN PRO ASN ASN PRO THR GLY SEQRES 14 B 363 ASN TYR ILE GLU LEU ALA ASP ILE GLN ALA PHE LEU ASP SEQRES 15 B 363 ARG VAL PRO SER ASP VAL LEU VAL VAL LEU ASP GLU ALA SEQRES 16 B 363 TYR ILE GLU TYR VAL THR PRO GLN PRO GLU LYS HIS GLU SEQRES 17 B 363 LYS LEU VAL ARG THR TYR LYS ASN LEU ILE ILE THR ARG SEQRES 18 B 363 THR PHE SER LYS ILE TYR GLY LEU ALA SER ALA ARG VAL SEQRES 19 B 363 GLY TYR GLY ILE ALA ASP LYS GLU ILE ILE ARG GLN LEU SEQRES 20 B 363 ASN ILE VAL ARG PRO PRO PHE ASN THR THR SER ILE GLY SEQRES 21 B 363 GLN LYS LEU ALA ILE GLU ALA ILE LYS ASP GLN ALA PHE SEQRES 22 B 363 ILE GLY GLU CYS ARG THR SER ASN ALA ASN GLY ILE LYS SEQRES 23 B 363 GLN TYR GLU ALA PHE ALA LYS ARG PHE GLU LYS VAL LYS SEQRES 24 B 363 LEU TYR PRO ALA ASN GLY ASN PHE VAL LEU ILE ASP LEU SEQRES 25 B 363 GLY ILE GLU ALA GLY THR ILE PHE SER TYR LEU GLU LYS SEQRES 26 B 363 ASN GLY TYR ILE THR ARG SER GLY ALA ALA LEU GLY PHE SEQRES 27 B 363 PRO THR ALA VAL ARG ILE THR ILE GLY LYS GLU GLU ASP SEQRES 28 B 363 ASN SER ALA VAL ILE ALA LEU LEU GLU LYS LEU LEU MODRES 3FFH MSE A 1 MET SELENOMETHIONINE MODRES 3FFH MSE A 23 MET SELENOMETHIONINE MODRES 3FFH MSE A 110 MET SELENOMETHIONINE MODRES 3FFH MSE A 145 MET SELENOMETHIONINE MODRES 3FFH MSE B 1 MET SELENOMETHIONINE MODRES 3FFH MSE B 23 MET SELENOMETHIONINE MODRES 3FFH MSE B 110 MET SELENOMETHIONINE MODRES 3FFH MSE B 145 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 23 8 HET MSE A 110 8 HET MSE A 145 8 HET MSE B 1 8 HET MSE B 23 8 HET MSE B 110 8 HET MSE B 145 8 HET SO4 A 361 5 HET SO4 A 362 5 HET SO4 A 363 5 HET SO4 A 364 5 HET SO4 B 361 5 HET SO4 B 362 5 HET SO4 B 363 5 HET SO4 B 364 5 HET SO4 B 365 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 9(O4 S 2-) FORMUL 12 HOH *125(H2 O) HELIX 1 1 LYS A 4 ALA A 8 5 5 HELIX 2 2 LYS A 17 GLU A 25 1 9 HELIX 3 3 SER A 44 ASN A 53 1 10 HELIX 4 4 ALA A 66 GLN A 78 1 13 HELIX 5 5 GLU A 80 GLU A 82 5 3 HELIX 6 6 GLY A 89 LEU A 102 1 14 HELIX 7 7 VAL A 116 GLY A 126 1 11 HELIX 8 8 ASP A 141 ILE A 149 1 9 HELIX 9 9 GLU A 170 ASP A 179 1 10 HELIX 10 10 TYR A 193 VAL A 197 5 5 HELIX 11 11 HIS A 204 THR A 210 5 7 HELIX 12 12 ASP A 237 VAL A 247 1 11 HELIX 13 13 THR A 254 ASP A 267 1 14 HELIX 14 14 ASP A 267 PHE A 292 1 26 HELIX 15 15 GLU A 312 ASN A 323 1 12 HELIX 16 16 LYS A 345 LEU A 360 1 16 HELIX 17 17 LYS B 4 ALA B 8 5 5 HELIX 18 18 ARG B 18 GLU B 25 1 8 HELIX 19 19 SER B 44 ASN B 53 1 10 HELIX 20 20 ALA B 66 TYR B 77 1 12 HELIX 21 21 GLU B 80 GLU B 82 5 3 HELIX 22 22 GLY B 89 LEU B 102 1 14 HELIX 23 23 VAL B 116 GLU B 125 1 10 HELIX 24 24 ASP B 141 ILE B 149 1 9 HELIX 25 25 GLU B 170 VAL B 181 1 12 HELIX 26 26 TYR B 193 VAL B 197 5 5 HELIX 27 27 LYS B 206 TYR B 211 1 6 HELIX 28 28 ASP B 237 VAL B 247 1 11 HELIX 29 29 THR B 254 ASP B 267 1 14 HELIX 30 30 ASP B 267 PHE B 292 1 26 HELIX 31 31 GLU B 312 LYS B 322 1 11 HELIX 32 32 ALA B 331 LEU B 333 5 3 HELIX 33 33 LYS B 345 LEU B 359 1 15 SHEET 1 A 2 THR A 32 LYS A 33 0 SHEET 2 A 2 TYR A 325 ILE A 326 1 O ILE A 326 N THR A 32 SHEET 1 B 7 LEU A 84 THR A 87 0 SHEET 2 B 7 GLY A 232 ALA A 236 -1 O GLY A 232 N THR A 87 SHEET 3 B 7 LEU A 214 THR A 219 -1 N ILE A 216 O ILE A 235 SHEET 4 B 7 LEU A 186 ASP A 190 1 N LEU A 189 O ILE A 215 SHEET 5 B 7 THR A 153 CYS A 159 1 N ILE A 158 O VAL A 188 SHEET 6 B 7 ASN A 107 THR A 112 1 N VAL A 109 O TRP A 157 SHEET 7 B 7 GLU A 128 PRO A 133 1 O ILE A 132 N MSE A 110 SHEET 1 C 4 LYS A 296 LEU A 297 0 SHEET 2 C 4 PHE A 304 ASP A 308 -1 O ASP A 308 N LYS A 296 SHEET 3 C 4 ALA A 338 THR A 342 -1 O ILE A 341 N VAL A 305 SHEET 4 C 4 ARG A 328 SER A 329 -1 N ARG A 328 O ARG A 340 SHEET 1 D 2 THR B 32 LYS B 33 0 SHEET 2 D 2 TYR B 325 ILE B 326 1 O ILE B 326 N THR B 32 SHEET 1 E 7 LEU B 84 THR B 87 0 SHEET 2 E 7 GLY B 232 ALA B 236 -1 O GLY B 232 N THR B 87 SHEET 3 E 7 LEU B 214 THR B 219 -1 N ARG B 218 O TYR B 233 SHEET 4 E 7 LEU B 186 ASP B 190 1 N LEU B 189 O ILE B 215 SHEET 5 E 7 THR B 153 CYS B 159 1 N ILE B 158 O VAL B 188 SHEET 6 E 7 ASN B 107 THR B 112 1 N VAL B 109 O TRP B 157 SHEET 7 E 7 GLU B 128 PRO B 133 1 O ILE B 132 N MSE B 110 SHEET 1 F 4 LYS B 296 LEU B 297 0 SHEET 2 F 4 PHE B 304 ASP B 308 -1 O ASP B 308 N LYS B 296 SHEET 3 F 4 ALA B 338 THR B 342 -1 O ILE B 341 N VAL B 305 SHEET 4 F 4 ARG B 328 SER B 329 -1 N ARG B 328 O ARG B 340 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C VAL A 22 N MSE A 23 1555 1555 1.34 LINK C MSE A 23 N ALA A 24 1555 1555 1.33 LINK C VAL A 109 N MSE A 110 1555 1555 1.32 LINK C MSE A 110 N ALA A 111 1555 1555 1.32 LINK C GLY A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N LEU A 146 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C VAL B 22 N MSE B 23 1555 1555 1.33 LINK C MSE B 23 N ALA B 24 1555 1555 1.34 LINK C VAL B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N ALA B 111 1555 1555 1.33 LINK C GLY B 144 N MSE B 145 1555 1555 1.33 LINK C MSE B 145 N LEU B 146 1555 1555 1.33 CISPEP 1 THR A 112 PRO A 113 0 -5.29 CISPEP 2 ASN A 160 PRO A 161 0 -0.04 CISPEP 3 ASN A 163 PRO A 164 0 24.80 CISPEP 4 THR A 198 PRO A 199 0 -12.79 CISPEP 5 THR B 112 PRO B 113 0 -8.42 CISPEP 6 ASN B 160 PRO B 161 0 6.13 CISPEP 7 ASN B 163 PRO B 164 0 22.06 CISPEP 8 THR B 198 PRO B 199 0 -7.80 SITE 1 AC1 7 GLY A 89 VAL A 90 ASP A 91 THR A 219 SITE 2 AC1 7 SER A 221 LYS A 222 ARG A 230 SITE 1 AC2 6 TYR A 168 GLU A 170 LEU A 171 PRO A 201 SITE 2 AC2 6 GLU A 202 HOH A 394 SITE 1 AC3 5 PHE A 115 ASN A 163 ARG A 328 ARG A 340 SITE 2 AC3 5 HOH A 421 SITE 1 AC4 6 LYS A 46 ASP A 267 ALA A 269 PHE A 270 SITE 2 AC4 6 GLU B 151 GLU B 347 SITE 1 AC5 6 GLY B 89 VAL B 90 ASP B 91 THR B 219 SITE 2 AC5 6 SER B 221 ARG B 230 SITE 1 AC6 6 PHE B 115 ASN B 163 ARG B 328 ARG B 340 SITE 2 AC6 6 HOH B 371 HOH B 413 SITE 1 AC7 5 GLU B 80 GLU B 83 ARG B 209 ASP B 237 SITE 2 AC7 5 LYS B 238 SITE 1 AC8 4 ASP B 267 ALA B 269 PHE B 270 SO4 B 365 SITE 1 AC9 4 SER B 44 LYS B 45 LYS B 46 SO4 B 364 CRYST1 78.456 83.671 122.773 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012746 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008145 0.00000 MASTER 437 0 17 33 26 0 16 6 0 0 0 56 END