HEADER TRANSFERASE 26-NOV-08 3FDS TITLE STRUCTURAL INSIGHT INTO RECRUITMENT OF TRANSLESION DNA POLYMERASE DPO4 TITLE 2 TO SLIDING CLAMP PCNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA POLYMERASE SLIDING CLAMP B; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: PROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG B, PCNA B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA POLYMERASE SLIDING CLAMP C; COMPND 14 CHAIN: D; COMPND 15 SYNONYM: PROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG C, PCNA C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: DBH, DPO4, SSO2448; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 12 ORGANISM_TAXID: 2287; SOURCE 13 GENE: PCNB, PCNA-2, SSO0397, C41_008; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET26; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 21 ORGANISM_TAXID: 2287; SOURCE 22 GENE: PCNC, PCNA-2, SSO1047; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PET26 KEYWDS PROTEIN-PROTEIN COMPLEX, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, KEYWDS 2 DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL-BINDING, KEYWDS 3 MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LING REVDAT 5 20-OCT-21 3FDS 1 REMARK SEQADV REVDAT 4 01-NOV-17 3FDS 1 REMARK REVDAT 3 13-JUL-11 3FDS 1 VERSN REVDAT 2 10-FEB-09 3FDS 1 JRNL REVDAT 1 20-JAN-09 3FDS 0 JRNL AUTH G.XING,K.KIROUAC,Y.J.SHIN,S.D.BELL,H.LING JRNL TITL STRUCTURAL INSIGHT INTO RECRUITMENT OF TRANSLESION DNA JRNL TITL 2 POLYMERASE DPO4 TO SLIDING CLAMP PCNA JRNL REF MOL.MICROBIOL. V. 71 678 2009 JRNL REFN ISSN 0950-382X JRNL PMID 19054331 JRNL DOI 10.1111/J.1365-2958.2008.06553.X REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.406 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7083 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9495 ; 1.861 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 889 ; 8.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;36.538 ;24.271 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1362 ;17.931 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;20.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1088 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5095 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4300 ; 0.801 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7017 ; 1.458 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2783 ; 2.778 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2464 ; 4.304 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4820 29.5150 -11.4270 REMARK 3 T TENSOR REMARK 3 T11: -0.0995 T22: -0.0107 REMARK 3 T33: -0.2215 T12: 0.0928 REMARK 3 T13: 0.0031 T23: -0.1435 REMARK 3 L TENSOR REMARK 3 L11: 7.0657 L22: 5.6208 REMARK 3 L33: 6.0011 L12: -3.1879 REMARK 3 L13: -3.0007 L23: 3.6863 REMARK 3 S TENSOR REMARK 3 S11: -0.1699 S12: -0.9443 S13: 0.4882 REMARK 3 S21: 0.4060 S22: 0.0567 S23: -0.0213 REMARK 3 S31: 0.2656 S32: -0.0415 S33: 0.1132 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0090 -4.0390 -11.7610 REMARK 3 T TENSOR REMARK 3 T11: 0.3207 T22: 0.5911 REMARK 3 T33: 1.2151 T12: -0.0915 REMARK 3 T13: 0.2197 T23: 0.2786 REMARK 3 L TENSOR REMARK 3 L11: 6.1634 L22: 6.6803 REMARK 3 L33: 6.9164 L12: -0.4000 REMARK 3 L13: -1.1658 L23: -1.8238 REMARK 3 S TENSOR REMARK 3 S11: -0.2435 S12: -1.1966 S13: -1.6572 REMARK 3 S21: 0.9444 S22: 0.4106 S23: 2.3303 REMARK 3 S31: 0.7961 S32: -1.8445 S33: -0.1672 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 RESIDUE RANGE : A 78 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0230 9.9900 -24.4350 REMARK 3 T TENSOR REMARK 3 T11: -0.1637 T22: -0.2069 REMARK 3 T33: -0.2555 T12: 0.0517 REMARK 3 T13: -0.0284 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 4.6873 L22: 5.7256 REMARK 3 L33: 3.0434 L12: -2.7421 REMARK 3 L13: 0.2222 L23: -0.5097 REMARK 3 S TENSOR REMARK 3 S11: 0.2428 S12: 0.1156 S13: -0.5214 REMARK 3 S21: -0.4178 S22: -0.1141 S23: 0.2152 REMARK 3 S31: 0.3017 S32: -0.1362 S33: -0.1287 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -23.5700 -2.9460 -49.4650 REMARK 3 T TENSOR REMARK 3 T11: -0.1331 T22: -0.2184 REMARK 3 T33: -0.1047 T12: -0.0675 REMARK 3 T13: 0.0524 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 3.0409 L22: 6.1548 REMARK 3 L33: 8.6066 L12: -0.4569 REMARK 3 L13: -1.6207 L23: 4.3047 REMARK 3 S TENSOR REMARK 3 S11: -0.3116 S12: 0.0768 S13: -0.2102 REMARK 3 S21: 0.3741 S22: 0.1453 S23: -0.1139 REMARK 3 S31: 0.7479 S32: -0.2447 S33: 0.1663 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3500 9.8160 -18.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.0073 T22: 0.5855 REMARK 3 T33: 0.1118 T12: 0.0694 REMARK 3 T13: 0.0288 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 4.4303 L22: 6.7891 REMARK 3 L33: 20.3146 L12: -2.1200 REMARK 3 L13: -0.2761 L23: 7.2123 REMARK 3 S TENSOR REMARK 3 S11: 0.2197 S12: -0.5599 S13: -0.2484 REMARK 3 S21: 0.7004 S22: 0.4226 S23: -0.8250 REMARK 3 S31: 1.0030 S32: 2.6636 S33: -0.6423 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 122 REMARK 3 ORIGIN FOR THE GROUP (A): -43.9510 4.0560 -3.1070 REMARK 3 T TENSOR REMARK 3 T11: -0.1601 T22: 0.1700 REMARK 3 T33: -0.1299 T12: 0.0094 REMARK 3 T13: 0.0210 T23: 0.2396 REMARK 3 L TENSOR REMARK 3 L11: 2.8257 L22: 2.2177 REMARK 3 L33: 7.7846 L12: 0.5252 REMARK 3 L13: -1.2358 L23: -2.6040 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.8425 S13: -0.4426 REMARK 3 S21: 0.1201 S22: 0.1515 S23: 0.1414 REMARK 3 S31: 0.0189 S32: -0.1872 S33: -0.1758 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 123 C 249 REMARK 3 ORIGIN FOR THE GROUP (A): -35.0650 20.8990 -22.2170 REMARK 3 T TENSOR REMARK 3 T11: -0.1246 T22: -0.1168 REMARK 3 T33: -0.2134 T12: -0.1030 REMARK 3 T13: 0.0534 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.7002 L22: 2.6263 REMARK 3 L33: 5.0996 L12: -0.4136 REMARK 3 L13: -0.1989 L23: -1.5103 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: -0.3786 S13: 0.1693 REMARK 3 S21: 0.3530 S22: -0.0400 S23: -0.1284 REMARK 3 S31: -0.6630 S32: 0.5499 S33: -0.0604 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 111 REMARK 3 ORIGIN FOR THE GROUP (A): -50.2110 26.0960 -48.5430 REMARK 3 T TENSOR REMARK 3 T11: -0.1341 T22: -0.2277 REMARK 3 T33: -0.0762 T12: -0.0298 REMARK 3 T13: 0.0334 T23: 0.0997 REMARK 3 L TENSOR REMARK 3 L11: 3.6126 L22: 2.8062 REMARK 3 L33: 2.4357 L12: 1.2150 REMARK 3 L13: 0.7665 L23: -0.2540 REMARK 3 S TENSOR REMARK 3 S11: -0.1945 S12: 0.2726 S13: 0.2888 REMARK 3 S21: -0.1882 S22: 0.1329 S23: 0.2879 REMARK 3 S31: -0.1225 S32: 0.1159 S33: 0.0616 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 112 D 146 REMARK 3 ORIGIN FOR THE GROUP (A): -64.3240 19.9620 -56.0580 REMARK 3 T TENSOR REMARK 3 T11: -0.0528 T22: -0.2014 REMARK 3 T33: 0.0423 T12: -0.0163 REMARK 3 T13: 0.0175 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 10.6517 L22: 2.4823 REMARK 3 L33: 1.3093 L12: 2.2514 REMARK 3 L13: 1.3245 L23: -0.2795 REMARK 3 S TENSOR REMARK 3 S11: -0.0891 S12: 0.8968 S13: 1.1056 REMARK 3 S21: -0.2457 S22: 0.0563 S23: 0.7326 REMARK 3 S31: 0.0748 S32: 0.0473 S33: 0.0328 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 147 D 246 REMARK 3 ORIGIN FOR THE GROUP (A): -73.6780 15.8680 -55.9960 REMARK 3 T TENSOR REMARK 3 T11: -0.0698 T22: -0.1266 REMARK 3 T33: 0.2121 T12: -0.0386 REMARK 3 T13: -0.0728 T23: 0.0632 REMARK 3 L TENSOR REMARK 3 L11: 6.5932 L22: 7.4220 REMARK 3 L33: 1.5924 L12: 4.8525 REMARK 3 L13: 0.2123 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.3490 S12: 0.7201 S13: 0.8444 REMARK 3 S21: -0.5659 S22: 0.3912 S23: 1.3410 REMARK 3 S31: -0.0757 S32: -0.1094 S33: -0.0422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97902 REMARK 200 MONOCHROMATOR : INSERTED DEVICE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64500 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1JX4 AND 2IJX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 125MM LICL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.20700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO D 123 REMARK 465 SER D 124 REMARK 465 VAL D 125 REMARK 465 ASN D 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 217 CB CG1 CG2 CD1 REMARK 470 GLU A 219 CB CG CD OE1 OE2 REMARK 470 GLU A 235 CB CG CD OE1 OE2 REMARK 470 THR A 352 OG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 63 CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 193 O MET A 216 2.05 REMARK 500 O HOH A 549 O HOH A 594 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 404 O HOH C 544 1655 2.01 REMARK 500 NH2 ARG A 242 OD1 ASP D 149 1655 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 176 CD ARG A 176 NE 0.112 REMARK 500 ARG A 176 CZ ARG A 176 NH2 0.114 REMARK 500 GLU A 209 CD GLU A 209 OE2 0.089 REMARK 500 GLU A 259 CD GLU A 259 OE1 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 35 N - CA - C ANGL. DEV. = -24.6 DEGREES REMARK 500 GLU A 97 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 176 NH1 - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 GLU A 235 N - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 GLU A 259 OE1 - CD - OE2 ANGL. DEV. = -9.4 DEGREES REMARK 500 GLU A 259 CG - CD - OE1 ANGL. DEV. = 12.4 DEGREES REMARK 500 GLY A 305 C - N - CA ANGL. DEV. = -12.8 DEGREES REMARK 500 LYS A 348 N - CA - C ANGL. DEV. = -22.9 DEGREES REMARK 500 THR C 23 CB - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 GLY C 174 C - N - CA ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU D 73 CA - CB - CG ANGL. DEV. = -19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 53.02 34.86 REMARK 500 SER A 34 -142.32 -75.78 REMARK 500 SER A 34 -141.62 -76.53 REMARK 500 LEU A 68 74.98 -115.78 REMARK 500 LYS A 214 71.73 -106.33 REMARK 500 ILE A 217 -129.71 134.64 REMARK 500 GLU A 235 -92.64 -101.87 REMARK 500 ARG A 240 144.48 -36.90 REMARK 500 ASP A 277 -111.17 59.96 REMARK 500 LYS A 339 74.12 53.43 REMARK 500 ASP A 347 -63.51 -4.53 REMARK 500 ASP A 351 -166.27 -22.69 REMARK 500 ASP C 63 -61.08 -91.03 REMARK 500 SER C 107 93.71 23.29 REMARK 500 ALA C 109 -158.59 -83.24 REMARK 500 GLN C 121 105.44 87.97 REMARK 500 GLU C 163 -119.21 62.37 REMARK 500 GLU C 173 -132.27 48.48 REMARK 500 ASP C 184 -0.64 74.25 REMARK 500 ASN D 94 -156.69 -135.34 REMARK 500 PRO D 232 151.64 -47.53 REMARK 500 GLN D 233 -140.62 62.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 97 LYS A 98 41.32 REMARK 500 ASN A 234 GLU A 235 -71.26 REMARK 500 ASP A 347 LYS A 348 -121.44 REMARK 500 PHE A 350 ASP A 351 -133.08 REMARK 500 ASP A 351 THR A 352 57.46 REMARK 500 LYS C 119 GLY C 120 126.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY D 190 -10.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 366 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG C 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE D 247 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IJX RELATED DB: PDB REMARK 900 PCNA1-PCNA2 HETERODIMER REMARK 900 RELATED ID: 2NTI RELATED DB: PDB REMARK 900 PCNA1-PCNA2-PCNA3 HETEROTRIMER REMARK 900 RELATED ID: 2RDI RELATED DB: PDB REMARK 900 APO-DPO4 REMARK 900 RELATED ID: 1JX4 RELATED DB: PDB REMARK 900 DPO4-DNA-DNTP TERNARY COMPLEX DBREF 3FDS A 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 3FDS C 1 249 UNP P57766 PCNA2_SULSO 1 249 DBREF 3FDS D 2 245 UNP Q97Z84 PCNA3_SULSO 1 244 SEQADV 3FDS VAL C 2 UNP P57766 PHE 2 ENGINEERED MUTATION SEQADV 3FDS MET D 1 UNP Q97Z84 INITIATING METHIONINE SEQRES 1 A 352 MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 352 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 352 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 352 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 352 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 352 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 352 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 352 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 352 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 352 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 352 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 352 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 352 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 352 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 352 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 352 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 352 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 352 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 352 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 352 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 352 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 352 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 352 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 352 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 352 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 352 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 352 LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP SEQRES 28 A 352 THR SEQRES 1 C 249 MET VAL LYS ILE VAL TYR PRO ASN ALA LYS ASP PHE PHE SEQRES 2 C 249 SER PHE ILE ASN SER ILE THR ASN VAL THR ASP SER ILE SEQRES 3 C 249 ILE LEU ASN PHE THR GLU ASP GLY ILE PHE SER ARG HIS SEQRES 4 C 249 LEU THR GLU ASP LYS VAL LEU MET ALA ILE MET ARG ILE SEQRES 5 C 249 PRO LYS ASP VAL LEU SER GLU TYR SER ILE ASP SER PRO SEQRES 6 C 249 THR SER VAL LYS LEU ASP VAL SER SER VAL LYS LYS ILE SEQRES 7 C 249 LEU SER LYS ALA SER SER LYS LYS ALA THR ILE GLU LEU SEQRES 8 C 249 THR GLU THR ASP SER GLY LEU LYS ILE ILE ILE ARG ASP SEQRES 9 C 249 GLU LYS SER GLY ALA LYS SER THR ILE TYR ILE LYS ALA SEQRES 10 C 249 GLU LYS GLY GLN VAL GLU GLN LEU THR GLU PRO LYS VAL SEQRES 11 C 249 ASN LEU ALA VAL ASN PHE THR THR ASP GLU SER VAL LEU SEQRES 12 C 249 ASN VAL ILE ALA ALA ASP VAL THR LEU VAL GLY GLU GLU SEQRES 13 C 249 MET ARG ILE SER THR GLU GLU ASP LYS ILE LYS ILE GLU SEQRES 14 C 249 ALA GLY GLU GLU GLY LYS ARG TYR VAL ALA PHE LEU MET SEQRES 15 C 249 LYS ASP LYS PRO LEU LYS GLU LEU SER ILE ASP THR SER SEQRES 16 C 249 ALA SER SER SER TYR SER ALA GLU MET PHE LYS ASP ALA SEQRES 17 C 249 VAL LYS GLY LEU ARG GLY PHE SER ALA PRO THR MET VAL SEQRES 18 C 249 SER PHE GLY GLU ASN LEU PRO MET LYS ILE ASP VAL GLU SEQRES 19 C 249 ALA VAL SER GLY GLY HIS MET ILE PHE TRP ILE ALA PRO SEQRES 20 C 249 ARG LEU SEQRES 1 D 245 MET MET LYS ALA LYS VAL ILE ASP ALA VAL SER PHE SER SEQRES 2 D 245 TYR ILE LEU ARG THR VAL GLY ASP PHE LEU SER GLU ALA SEQRES 3 D 245 ASN PHE ILE VAL THR LYS GLU GLY ILE ARG VAL SER GLY SEQRES 4 D 245 ILE ASP PRO SER ARG VAL VAL PHE LEU ASP ILE PHE LEU SEQRES 5 D 245 PRO SER SER TYR PHE GLU GLY PHE GLU VAL SER GLN GLU SEQRES 6 D 245 LYS GLU ILE ILE GLY PHE LYS LEU GLU ASP VAL ASN ASP SEQRES 7 D 245 ILE LEU LYS ARG VAL LEU LYS ASP ASP THR LEU ILE LEU SEQRES 8 D 245 SER SER ASN GLU SER LYS LEU THR LEU THR PHE ASP GLY SEQRES 9 D 245 GLU PHE THR ARG SER PHE GLU LEU PRO LEU ILE GLN VAL SEQRES 10 D 245 GLU SER THR GLN PRO PRO SER VAL ASN LEU GLU PHE PRO SEQRES 11 D 245 PHE LYS ALA GLN LEU LEU THR ILE THR PHE ALA ASP ILE SEQRES 12 D 245 ILE ASP GLU LEU SER ASP LEU GLY GLU VAL LEU ASN ILE SEQRES 13 D 245 HIS SER LYS GLU ASN LYS LEU TYR PHE GLU VAL ILE GLY SEQRES 14 D 245 ASP LEU SER THR ALA LYS VAL GLU LEU SER THR ASP ASN SEQRES 15 D 245 GLY THR LEU LEU GLU ALA SER GLY ALA ASP VAL SER SER SEQRES 16 D 245 SER TYR GLY MET GLU TYR VAL ALA ASN THR THR LYS MET SEQRES 17 D 245 ARG ARG ALA SER ASP SER MET GLU LEU TYR PHE GLY SER SEQRES 18 D 245 GLN ILE PRO LEU LYS LEU ARG PHE LYS LEU PRO GLN GLU SEQRES 19 D 245 GLY TYR GLY ASP PHE TYR ILE ALA PRO ARG ALA HET EDO A 353 4 HET EDO A 354 4 HET EDO A 355 4 HET EDO A 356 4 HET EDO A 357 4 HET EDO A 358 4 HET EDO A 359 4 HET EDO A 360 4 HET EDO A 361 4 HET EDO A 362 4 HET EDO A 363 4 HET EDO A 364 4 HET EDO A 365 4 HET EDO A 366 4 HET EDO A 367 4 HET EDO A 368 4 HET PEG A 369 7 HET 1PE A 370 16 HET GOL A 371 6 HET EDO C 250 4 HET EDO C 251 4 HET EDO C 252 4 HET EDO C 253 4 HET EDO C 254 4 HET EDO C 255 4 HET EDO C 256 4 HET EDO C 257 4 HET EDO C 258 4 HET PEG C 259 7 HET GOL C 260 6 HET GOL C 261 6 HET EDO D 246 4 HET PGE D 247 10 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 EDO 26(C2 H6 O2) FORMUL 20 PEG 2(C4 H10 O3) FORMUL 21 1PE C10 H22 O6 FORMUL 22 GOL 3(C3 H8 O3) FORMUL 36 PGE C6 H14 O4 FORMUL 37 HOH *317(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 LYS A 195 1 9 HELIX 11 11 LEU A 202 SER A 207 5 6 HELIX 12 12 GLU A 209 LYS A 214 1 6 HELIX 13 13 GLY A 218 ARG A 230 1 13 HELIX 14 14 ASN A 257 ASP A 277 1 21 HELIX 15 15 SER A 307 ASP A 326 1 20 HELIX 16 16 GLY A 345 PHE A 350 5 6 HELIX 17 17 ASN C 8 THR C 20 1 13 HELIX 18 18 ASP C 55 LEU C 57 5 3 HELIX 19 19 ASP C 71 SER C 80 1 10 HELIX 20 20 ASP C 139 GLY C 154 1 16 HELIX 21 21 ALA C 202 GLY C 211 1 10 HELIX 22 22 ASP D 8 ASP D 21 1 14 HELIX 23 23 LEU D 73 LYS D 81 1 9 HELIX 24 24 THR D 137 SER D 148 1 12 HELIX 25 25 MET D 199 THR D 205 1 7 HELIX 26 26 THR D 206 ALA D 211 5 6 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 30 O ALA A 44 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 ILE A 341 -1 O ARG A 331 N MET A 251 SHEET 3 C 4 ILE A 280 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O ARG A 298 N VAL A 286 SHEET 1 D 5 GLU C 59 SER C 61 0 SHEET 2 D 5 LYS C 3 TYR C 6 -1 N LYS C 3 O SER C 61 SHEET 3 D 5 ALA C 87 GLU C 93 -1 O LEU C 91 N ILE C 4 SHEET 4 D 5 GLY C 97 ASP C 104 -1 O ILE C 101 N GLU C 90 SHEET 5 D 5 LYS C 110 LYS C 116 -1 O ILE C 115 N LEU C 98 SHEET 1 E10 GLU C 118 LYS C 119 0 SHEET 2 E10 THR C 66 LEU C 70 -1 N LYS C 69 O GLU C 118 SHEET 3 E10 ILE C 26 PHE C 30 -1 N ILE C 26 O LEU C 70 SHEET 4 E10 GLY C 34 LEU C 40 -1 O PHE C 36 N ASN C 29 SHEET 5 E10 LEU C 46 PRO C 53 -1 O ILE C 52 N ILE C 35 SHEET 6 E10 HIS C 240 ILE C 245 -1 O ILE C 242 N ILE C 49 SHEET 7 E10 MET C 229 GLU C 234 -1 N ILE C 231 O PHE C 243 SHEET 8 E10 THR C 219 PHE C 223 -1 N MET C 220 O ASP C 232 SHEET 9 E10 VAL C 134 THR C 138 -1 N THR C 138 O THR C 219 SHEET 10 E10 GLU C 189 ILE C 192 -1 O SER C 191 N ASN C 135 SHEET 1 F 5 PRO C 186 LEU C 187 0 SHEET 2 F 5 LYS C 175 LYS C 183 1 O MET C 182 N LEU C 187 SHEET 3 F 5 LYS C 165 GLU C 172 -1 N ILE C 166 O LEU C 181 SHEET 4 F 5 GLU C 156 GLU C 162 -1 N ARG C 158 O GLU C 169 SHEET 5 F 5 SER C 197 SER C 201 -1 O TYR C 200 N MET C 157 SHEET 1 G 7 PRO C 186 LEU C 187 0 SHEET 2 G 7 LYS C 175 LYS C 183 1 O MET C 182 N LEU C 187 SHEET 3 G 7 THR D 107 PRO D 113 -1 O GLU D 111 N ARG C 176 SHEET 4 G 7 LYS D 97 ASP D 103 -1 N LEU D 98 O LEU D 112 SHEET 5 G 7 THR D 88 SER D 93 -1 N SER D 92 O THR D 99 SHEET 6 G 7 MET D 2 VAL D 6 -1 N ALA D 4 O LEU D 91 SHEET 7 G 7 PHE D 57 VAL D 62 -1 O GLU D 61 N LYS D 3 SHEET 1 H 9 GLU D 67 LYS D 72 0 SHEET 2 H 9 GLU D 25 THR D 31 -1 N PHE D 28 O ILE D 69 SHEET 3 H 9 GLY D 34 ILE D 40 -1 O ARG D 36 N ILE D 29 SHEET 4 H 9 VAL D 46 PRO D 53 -1 O ILE D 50 N VAL D 37 SHEET 5 H 9 TYR D 236 ILE D 241 -1 O TYR D 240 N PHE D 47 SHEET 6 H 9 LEU D 225 LYS D 230 -1 N LEU D 225 O ILE D 241 SHEET 7 H 9 SER D 214 PHE D 219 -1 N GLU D 216 O ARG D 228 SHEET 8 H 9 PHE D 131 LEU D 136 -1 N ALA D 133 O LEU D 217 SHEET 9 H 9 GLU D 187 GLY D 190 -1 O GLU D 187 N GLN D 134 SHEET 1 I 4 THR D 173 LEU D 178 0 SHEET 2 I 4 LYS D 162 ILE D 168 -1 N LEU D 163 O LEU D 178 SHEET 3 I 4 VAL D 153 LYS D 159 -1 N HIS D 157 O TYR D 164 SHEET 4 I 4 SER D 194 GLY D 198 -1 O SER D 195 N ILE D 156 CISPEP 1 SER A 34 GLY A 35 0 26.37 CISPEP 2 SER A 34 GLY A 35 0 26.58 CISPEP 3 LYS A 159 PRO A 160 0 -4.25 CISPEP 4 LYS A 214 GLY A 215 0 -3.57 CISPEP 5 MET A 216 ILE A 217 0 11.55 CISPEP 6 GLU A 235 PRO A 236 0 -23.71 CISPEP 7 SER C 107 GLY C 108 0 0.09 CISPEP 8 LYS C 185 PRO C 186 0 3.31 SITE 1 AC1 3 GLU A 94 HOH A 482 LYS D 81 SITE 1 AC2 2 GLY A 41 PRO A 60 SITE 1 AC3 2 GLU A 120 GLU A 127 SITE 1 AC4 4 HIS A 304 THR C 151 GLY C 154 EDO C 250 SITE 1 AC5 3 TYR A 122 EDO A 362 EDO A 367 SITE 1 AC6 4 PHE A 302 PRO A 303 HIS A 304 GLY A 305 SITE 1 AC7 2 GLU A 79 GLN A 83 SITE 1 AC8 6 LEU A 19 VAL A 84 ARG A 87 HOH A 488 SITE 2 AC8 6 HOH A 590 LYS D 85 SITE 1 AC9 2 GLU A 100 LYS A 148 SITE 1 BC1 4 VAL A 165 ASP A 167 EDO A 357 HOH A 631 SITE 1 BC2 4 LYS A 137 HOH A 554 HOH A 658 HOH A 663 SITE 1 BC3 3 TYR A 48 LYS A 159 SER C 84 SITE 1 BC4 3 ARG A 51 LYS A 56 HOH A 615 SITE 1 BC5 6 ASN A 130 ASN A 161 HOH A 451 HOH A 559 SITE 2 BC5 6 GLU C 140 ARG C 213 SITE 1 BC6 4 LYS A 164 VAL A 165 EDO A 357 ASN C 17 SITE 1 BC7 5 TYR A 10 PRO A 160 ASN A 161 HOH A 435 SITE 2 BC7 5 LYS C 10 SITE 1 BC8 15 TYR A 122 ASN A 123 LEU A 126 ASN A 130 SITE 2 BC8 15 HOH A 559 HOH A 669 ASN C 17 THR C 20 SITE 3 BC8 15 ASN C 21 ASN C 144 LYS C 206 LYS C 210 SITE 4 BC8 15 ARG C 213 HOH C 475 HOH C 573 SITE 1 BC9 6 PHE A 11 TYR A 12 THR A 45 ILE A 104 SITE 2 BC9 6 ASP A 105 HOH A 595 SITE 1 CC1 5 EDO A 356 VAL C 153 GLU C 172 LYS C 175 SITE 2 CC1 5 PEG C 259 SITE 1 CC2 4 ARG C 38 HIS C 39 LEU C 40 HOH C 616 SITE 1 CC3 3 LYS C 54 TYR C 60 ILE C 62 SITE 1 CC4 4 ASN C 21 THR C 41 LEU C 46 ASP C 207 SITE 1 CC5 2 THR C 31 ARG C 51 SITE 1 CC6 4 GLU C 127 LYS C 230 ASP C 232 ILE C 242 SITE 1 CC7 6 THR C 138 ASP C 139 VAL C 142 PRO C 186 SITE 2 CC7 6 LEU C 187 LYS C 188 SITE 1 CC8 4 MET C 220 ASP C 232 HIS C 240 HOH C 418 SITE 1 CC9 4 GLY C 174 HOH C 654 LYS D 97 PRO D 113 SITE 1 DC1 9 LEU C 152 VAL C 153 LYS C 175 ARG C 176 SITE 2 DC1 9 EDO C 250 HOH C 382 ASP D 78 GLU D 111 SITE 3 DC1 9 HOH D 546 SITE 1 DC2 8 LYS A 282 GLU C 156 ALA C 170 GLY C 171 SITE 2 DC2 8 GLU C 172 HOH C 495 HOH C 607 HOH C 618 SITE 1 DC3 9 ALA A 343 VAL C 45 TYR C 200 SER C 201 SITE 2 DC3 9 ALA C 246 ARG C 248 HOH C 513 HOH C 553 SITE 3 DC3 9 HOH C 560 SITE 1 DC4 6 LEU D 150 GLY D 151 GLU D 152 GLY D 169 SITE 2 DC4 6 ASP D 170 HOH D 575 SITE 1 DC5 9 LYS C 175 GLY D 70 PHE D 71 LYS D 72 SITE 2 DC5 9 ASP D 75 LEU D 112 PRO D 113 HOH D 392 SITE 3 DC5 9 HOH D 598 CRYST1 65.986 86.414 97.582 90.00 107.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015155 0.000000 0.004719 0.00000 SCALE2 0.000000 0.011572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010733 0.00000 MASTER 729 0 33 26 52 0 49 6 0 0 0 67 END