HEADER TRANSFERASE 22-NOV-08 3FCR TITLE CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE (YP_614685.1) FROM TITLE 2 SILICIBACTER SP. TM1040 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER SP. TM1040; SOURCE 3 ORGANISM_TAXID: 292414; SOURCE 4 GENE: TM1040_2691, YP_614685.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_614685.1, PUTATIVE AMINOTRANSFERASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, AMINOTRANSFERASE, PYRIDOXAL PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 24-JUL-19 3FCR 1 REMARK LINK REVDAT 4 01-NOV-17 3FCR 1 REMARK REVDAT 3 13-JUL-11 3FCR 1 VERSN REVDAT 2 27-JAN-09 3FCR 1 DBREF REVDAT 1 13-JAN-09 3FCR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE (YP_614685.1) JRNL TITL 2 FROM SILICIBACTER SP. TM1040 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 37767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : 3.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3675 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2449 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4997 ; 1.737 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5971 ; 1.060 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 4.024 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;33.163 ;24.085 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;12.074 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4157 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 744 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 787 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2608 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1745 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1770 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 287 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 114 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2579 ; 1.278 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 957 ; 0.295 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3664 ; 1.757 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1527 ; 1.168 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1321 ; 1.741 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.1,2-ETHANEDIOL (EDO) MOLECULES FROM THE REMARK 3 CRYOPROTECTION CONDITION HAVE BEEN MODELED IN THE SOLVENT REMARK 3 STRUCTURE. 4.PYRIDOXAL PHOSPHATE IN DUAL CONFORMATION AS FREE REMARK 3 PLP AND COVALENTLY ATTACHED TO LYS288 (LLP) HAS BEEN MODELED AT REMARK 3 THE PUTATIVE ACTIVE SITE BASED ON DIFFERENCE DENSITY AND OMIT REMARK 3 MAPS AND STRUCTURAL SIMILARITY TO PLP-DEPENDENT REMARK 3 AMINOTRANSFERASES. 5.RESIDUE ALA287 IS PRESENT IN THE VICINITY REMARK 3 OF THE PUTATIVE ACTIVE SITE AND IS A RAMACHANDRAN OUTLIER. THIS REMARK 3 COULD HAVE SOME FUNCTIONAL SIGNIFICANCE. REMARK 4 REMARK 4 3FCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97962 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37793 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND . REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0000% PEG-6000, 0.1M BICINE PH 9.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.42500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.42500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THAT A REMARK 300 DIMER IS THE STABLE OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 726 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CE NZ REMARK 470 LYS A 50 CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 GLU A 280 CB CG CD OE1 OE2 REMARK 470 GLU A 365 CD OE1 OE2 REMARK 470 GLN A 369 CD OE1 NE2 REMARK 470 LYS A 389 CE NZ REMARK 470 LYS A 402 CE NZ REMARK 470 GLU A 413 CD OE1 OE2 REMARK 470 LYS A 416 NZ REMARK 470 LYS A 453 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 476 O HOH A 646 2555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 81 95.25 -166.32 REMARK 500 LYS A 171 -2.02 75.70 REMARK 500 PHE A 265 42.34 79.60 REMARK 500 GLU A 280 73.51 -114.92 REMARK 500 ALA A 287 -154.06 -179.34 REMARK 500 ALA A 287 -154.06 -179.34 REMARK 500 LLP A 288 -90.47 44.40 REMARK 500 LYS A 288 -90.22 44.06 REMARK 500 LEU A 297 144.61 -177.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 459 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 463 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391382 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3FCR A 1 457 UNP Q1GD43 Q1GD43_SILST 1 457 SEQADV 3FCR GLY A 0 UNP Q1GD43 LEADER SEQUENCE SEQADV 3FCR LLP A 288 UNP Q1GD43 LYS 288 MICROHETEROGENEITY SEQRES 1 A 458 GLY MSE LEU LYS ASN ASP GLN LEU ASP GLN TRP ASP ARG SEQRES 2 A 458 ASP ASN PHE PHE HIS PRO SER THR HIS LEU ALA GLN HIS SEQRES 3 A 458 ALA ARG GLY GLU SER ALA ASN ARG VAL ILE LYS THR ALA SEQRES 4 A 458 SER GLY VAL PHE ILE GLU ASP ARG ASP GLY THR LYS LEU SEQRES 5 A 458 LEU ASP ALA PHE ALA GLY LEU TYR CYS VAL ASN VAL GLY SEQRES 6 A 458 TYR GLY ARG GLN GLU ILE ALA GLU ALA ILE ALA ASP GLN SEQRES 7 A 458 ALA ARG GLU LEU ALA TYR TYR HIS SER TYR VAL GLY HIS SEQRES 8 A 458 GLY THR GLU ALA SER ILE THR LEU ALA LYS MSE ILE LEU SEQRES 9 A 458 ASP ARG ALA PRO LYS ASN MSE SER LYS VAL TYR PHE GLY SEQRES 10 A 458 LEU GLY GLY SER ASP ALA ASN GLU THR ASN VAL LYS LEU SEQRES 11 A 458 ILE TRP TYR TYR ASN ASN ILE LEU GLY ARG PRO GLU LYS SEQRES 12 A 458 LYS LYS ILE ILE SER ARG TRP ARG GLY TYR HIS GLY SER SEQRES 13 A 458 GLY LEU VAL THR GLY SER LEU THR GLY LEU GLU LEU PHE SEQRES 14 A 458 HIS LYS LYS PHE ASP LEU PRO VAL GLU GLN VAL ILE HIS SEQRES 15 A 458 THR GLU ALA PRO TYR TYR PHE ARG ARG GLU ASP LEU ASN SEQRES 16 A 458 GLN THR GLU GLU GLN PHE VAL ALA HIS CYS VAL ALA GLU SEQRES 17 A 458 LEU GLU ALA LEU ILE GLU ARG GLU GLY ALA ASP THR ILE SEQRES 18 A 458 ALA ALA PHE ILE GLY GLU PRO ILE LEU GLY THR GLY GLY SEQRES 19 A 458 ILE VAL PRO PRO PRO ALA GLY TYR TRP GLU ALA ILE GLN SEQRES 20 A 458 THR VAL LEU ASN LYS HIS ASP ILE LEU LEU VAL ALA ASP SEQRES 21 A 458 GLU VAL VAL THR GLY PHE GLY ARG LEU GLY THR MSE PHE SEQRES 22 A 458 GLY SER ASP HIS TYR GLY LEU GLU PRO ASP ILE ILE THR SEQRES 23 A 458 ILE ALA LLP GLY LEU THR SER ALA TYR ALA PRO LEU SER SEQRES 24 A 458 GLY SER ILE VAL SER ASP LYS VAL TRP LYS VAL LEU GLU SEQRES 25 A 458 GLN GLY THR ASP GLU ASN GLY PRO ILE GLY HIS GLY TRP SEQRES 26 A 458 THR TYR SER ALA HIS PRO ILE GLY ALA ALA ALA GLY VAL SEQRES 27 A 458 ALA ASN LEU LYS LEU LEU ASP GLU LEU ASN LEU VAL SER SEQRES 28 A 458 ASN ALA GLY GLU VAL GLY ALA TYR LEU ASN ALA THR MSE SEQRES 29 A 458 ALA GLU ALA LEU SER GLN HIS ALA ASN VAL GLY ASP VAL SEQRES 30 A 458 ARG GLY GLU GLY LEU LEU CYS ALA VAL GLU PHE VAL LYS SEQRES 31 A 458 ASP ARG ASP SER ARG THR PHE PHE ASP ALA ALA ASP LYS SEQRES 32 A 458 ILE GLY PRO GLN ILE SER ALA LYS LEU LEU GLU GLN ASP SEQRES 33 A 458 LYS ILE ILE ALA ARG ALA MSE PRO GLN GLY ASP ILE LEU SEQRES 34 A 458 GLY PHE ALA PRO PRO PHE CYS LEU THR ARG ALA GLU ALA SEQRES 35 A 458 ASP GLN VAL VAL GLU GLY THR LEU ARG ALA VAL LYS ALA SEQRES 36 A 458 VAL LEU GLY MODRES 3FCR MSE A 1 MET SELENOMETHIONINE MODRES 3FCR MSE A 101 MET SELENOMETHIONINE MODRES 3FCR MSE A 110 MET SELENOMETHIONINE MODRES 3FCR MSE A 271 MET SELENOMETHIONINE MODRES 3FCR LLP A 288 LYS MODRES 3FCR MSE A 363 MET SELENOMETHIONINE MODRES 3FCR MSE A 422 MET SELENOMETHIONINE HET MSE A 1 18 HET MSE A 101 8 HET MSE A 110 8 HET MSE A 271 8 HET LLP A 288 24 HET MSE A 363 8 HET MSE A 422 8 HET PLP A 458 16 HET EDO A 459 4 HET EDO A 460 4 HET EDO A 461 4 HET EDO A 462 4 HET EDO A 463 4 HETNAM MSE SELENOMETHIONINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *313(H2 O) HELIX 1 1 GLY A 0 PHE A 15 1 16 HELIX 2 2 HIS A 21 ARG A 27 1 7 HELIX 3 3 PHE A 55 CYS A 60 1 6 HELIX 4 4 ARG A 67 ALA A 82 1 16 HELIX 5 5 THR A 92 ALA A 106 1 15 HELIX 6 6 GLY A 118 LEU A 137 1 20 HELIX 7 7 GLY A 156 THR A 163 1 8 HELIX 8 8 LEU A 165 HIS A 169 5 5 HELIX 9 9 TYR A 186 ARG A 190 5 5 HELIX 10 10 THR A 196 GLY A 216 1 21 HELIX 11 11 GLY A 240 ASP A 253 1 14 HELIX 12 12 PHE A 272 GLY A 278 1 7 HELIX 13 13 ALA A 287 THR A 291 5 5 HELIX 14 14 ASP A 304 GLY A 318 1 15 HELIX 15 15 HIS A 329 LEU A 346 1 18 HELIX 16 16 ASN A 347 SER A 368 1 22 HELIX 17 17 ASP A 398 ASP A 401 5 4 HELIX 18 18 LYS A 402 LYS A 416 1 15 HELIX 19 19 THR A 437 GLY A 457 1 21 SHEET 1 A 4 ILE A 35 SER A 39 0 SHEET 2 A 4 PHE A 42 ASP A 45 -1 O PHE A 42 N SER A 39 SHEET 3 A 4 LYS A 50 ASP A 53 -1 O LEU A 51 N ILE A 43 SHEET 4 A 4 ILE A 417 ILE A 418 1 O ILE A 418 N LEU A 52 SHEET 1 B 7 MSE A 110 GLY A 116 0 SHEET 2 B 7 SER A 298 SER A 303 -1 O VAL A 302 N SER A 111 SHEET 3 B 7 ILE A 283 ILE A 286 -1 N ILE A 284 O ILE A 301 SHEET 4 B 7 LEU A 255 ASP A 259 1 N ALA A 258 O ILE A 283 SHEET 5 B 7 ILE A 220 GLY A 225 1 N PHE A 223 O VAL A 257 SHEET 6 B 7 LYS A 144 ARG A 148 1 N ILE A 146 O ILE A 224 SHEET 7 B 7 VAL A 179 THR A 182 1 O ILE A 180 N SER A 147 SHEET 1 C 4 VAL A 373 GLY A 378 0 SHEET 2 C 4 CYS A 383 PHE A 387 -1 O ALA A 384 N ARG A 377 SHEET 3 C 4 ILE A 427 PHE A 430 -1 O PHE A 430 N CYS A 383 SHEET 4 C 4 ARG A 420 ALA A 421 -1 N ARG A 420 O GLY A 429 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LEU A 2 1555 1555 1.32 LINK C LYS A 100 N MSE A 101 1555 1555 1.32 LINK C MSE A 101 N ILE A 102 1555 1555 1.33 LINK C ASN A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N SER A 111 1555 1555 1.33 LINK C THR A 270 N MSE A 271 1555 1555 1.33 LINK C MSE A 271 N PHE A 272 1555 1555 1.33 LINK C ALA A 287 N ALLP A 288 1555 1555 1.35 LINK C ALLP A 288 N GLY A 289 1555 1555 1.34 LINK C THR A 362 N MSE A 363 1555 1555 1.34 LINK C MSE A 363 N ALA A 364 1555 1555 1.33 LINK C ALA A 421 N MSE A 422 1555 1555 1.33 LINK C MSE A 422 N PRO A 423 1555 1555 1.35 CISPEP 1 LEU A 174 PRO A 175 0 -0.78 SITE 1 AC1 18 GLY A 118 GLY A 119 SER A 120 TYR A 152 SITE 2 AC1 18 HIS A 153 GLY A 154 GLU A 226 ASP A 259 SITE 3 AC1 18 VAL A 261 VAL A 262 LLP A 288 TRP A 324 SITE 4 AC1 18 THR A 325 HOH A 464 HOH A 469 HOH A 504 SITE 5 AC1 18 HOH A 568 HOH A 646 SITE 1 AC2 4 ASN A 4 LEU A 7 ARG A 46 GLU A 93 SITE 1 AC3 5 THR A 37 SER A 39 PHE A 42 GLU A 44 SITE 2 AC3 5 LYS A 50 SITE 1 AC4 4 TRP A 10 LYS A 100 MSE A 101 HOH A 567 SITE 1 AC5 3 ASP A 121 TRP A 324 HOH A 577 SITE 1 AC6 6 ASN A 135 HIS A 169 LYS A 171 PHE A 172 SITE 2 AC6 6 ASP A 173 HOH A 611 CRYST1 76.850 96.250 60.300 90.00 105.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013012 0.000000 0.003611 0.00000 SCALE2 0.000000 0.010390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017210 0.00000 MASTER 363 0 13 19 15 0 12 6 0 0 0 36 END