HEADER OXIDOREDUCTASE 31-OCT-08 3F44 TITLE CRYSTAL STRUCTURE OF PUTATIVE MONOOXYGENASE (YP_193413.1) FROM TITLE 2 LACTOBACILLUS ACIDOPHILUS NCFM AT 1.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS ACIDOPHILUS NCFM; SOURCE 3 ORGANISM_TAXID: 272621; SOURCE 4 GENE: LBA0497, YP_193413.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_193413.1, PUTATIVE MONOOXYGENASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, UNKNOWN FUNCTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 24-JUL-19 3F44 1 REMARK LINK REVDAT 4 25-OCT-17 3F44 1 REMARK REVDAT 3 13-JUL-11 3F44 1 VERSN REVDAT 2 24-FEB-09 3F44 1 VERSN REVDAT 1 18-NOV-08 3F44 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE MONOOXYGENASE (YP_193413.1) JRNL TITL 2 FROM LACTOBACILLUS ACIDOPHILUS NCFM AT 1.55 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2218 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 16.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1825 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1209 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2496 ; 1.584 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3007 ; 1.239 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 3.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;30.914 ;25.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ; 9.948 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2079 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 339 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 315 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1184 ; 0.144 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 867 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 934 ; 0.075 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1190 ; 1.197 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 447 ; 0.200 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1838 ; 1.842 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 749 ; 3.412 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 638 ; 4.551 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 105 REMARK 3 RESIDUE RANGE : A 113 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4810 25.4700 5.5970 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: -0.1061 REMARK 3 T33: -0.1199 T12: -0.0031 REMARK 3 T13: 0.0049 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.4217 L22: 0.3633 REMARK 3 L33: 0.4940 L12: -0.0307 REMARK 3 L13: 0.2912 L23: -0.0659 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.0718 S13: 0.0141 REMARK 3 S21: 0.0145 S22: 0.0516 S23: -0.0351 REMARK 3 S31: -0.0610 S32: 0.0260 S33: -0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ACT REMARK 3 MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. REMARK 4 REMARK 4 3F44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97967 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31526 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 26.371 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STATISTICS REPORTED IN THE REMARK 200 STATEMENTS ABOVE REMARK 200 WERE COMPUTED WITH THE FRIEDEL PAIRS KEPT SEPARATE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M CA(OAC)2, 20.0000% PEG-8000, REMARK 280 0.1M MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.69000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.48500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.69000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.48500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 51.69000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.69000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 20.48500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 51.69000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 51.69000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 20.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 106 REMARK 465 ALA A 107 REMARK 465 LEU A 108 REMARK 465 ASN A 109 REMARK 465 SER A 110 REMARK 465 TYR A 111 REMARK 465 ALA A 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 62 CD NE CZ NH1 NH2 REMARK 470 LYS A 64 CE NZ REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A 91 NZ REMARK 470 ASP A 113 CG OD1 OD2 REMARK 470 LYS A 121 NZ REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 LYS A 131 CE NZ REMARK 470 LYS A 182 CD CE NZ REMARK 470 VAL A 217 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 153 SE MSE A 153 CE -0.481 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 98 -66.36 -109.53 REMARK 500 ASN A 173 -179.38 -171.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 220 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391715 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE DBREF 3F44 A 1 219 UNP Q5FLP2 Q5FLP2_LACAC 1 219 SEQADV 3F44 GLY A 0 UNP Q5FLP2 INSERTION SEQRES 1 A 220 GLY MSE ASP GLU THR PRO ILE PHE LYS ILE LYS LYS LEU SEQRES 2 A 220 THR ILE ALA GLU ASN ASP ARG SER GLU TYR ILE ARG TYR SEQRES 3 A 220 ALA GLU LYS ASN MSE HIS ASP SER ILE PRO ALA GLU GLU SEQRES 4 A 220 GLY THR LEU LEU ILE GLY SER GLY HIS ASP ASP ALA HIS SEQRES 5 A 220 GLY GLU ASP ASN TYR GLU ILE GLU VAL PHE ARG ASN LYS SEQRES 6 A 220 GLY ALA GLU ASP LEU HIS ILE ALA GLY SER HIS ALA ASP SEQRES 7 A 220 ASP PHE VAL GLU THR VAL ASN LYS ILE ALA THR LYS GLN SEQRES 8 A 220 LYS VAL ILE ASP LEU HIS PRO GLU VAL ILE THR THR LYS SEQRES 9 A 220 ALA GLN ARG ALA LEU ASN SER TYR ALA ASP ASN PHE VAL SEQRES 10 A 220 MSE ARG LEU ILE LYS VAL GLU VAL LYS ASP ALA ASP ALA SEQRES 11 A 220 GLU LYS PHE SER HIS ALA VAL LYS LYS GLU MSE THR THR SEQRES 12 A 220 SER MSE ALA SER GLU PRO GLY MSE GLU ILE MSE MSE SER SEQRES 13 A 220 GLY THR ASN ILE ASP ASN PRO ASN GLU TRP TYR PHE ILE SEQRES 14 A 220 GLU VAL TYR ALA ASN ASP GLU ALA TYR ASP ILE HIS VAL SEQRES 15 A 220 LYS THR PRO HIS TYR LYS GLU TYR ILE GLU GLU THR ASP SEQRES 16 A 220 GLY MSE VAL LYS SER ARG ASP VAL LYS THR LEU VAL ARG SEQRES 17 A 220 ASP THR LEU ALA THR GLN GLY ALA ILE VAL LEU ASP MODRES 3F44 MSE A 30 MET SELENOMETHIONINE MODRES 3F44 MSE A 117 MET SELENOMETHIONINE MODRES 3F44 MSE A 140 MET SELENOMETHIONINE MODRES 3F44 MSE A 144 MET SELENOMETHIONINE MODRES 3F44 MSE A 150 MET SELENOMETHIONINE MODRES 3F44 MSE A 153 MET SELENOMETHIONINE MODRES 3F44 MSE A 154 MET SELENOMETHIONINE MODRES 3F44 MSE A 196 MET SELENOMETHIONINE HET MSE A 30 8 HET MSE A 117 13 HET MSE A 140 13 HET MSE A 144 13 HET MSE A 150 13 HET MSE A 153 13 HET MSE A 154 13 HET MSE A 196 8 HET ACT A 220 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *213(H2 O) HELIX 1 1 ASP A 18 ILE A 34 1 17 HELIX 2 2 ASN A 63 ALA A 72 1 10 HELIX 3 3 GLY A 73 ILE A 86 1 14 HELIX 4 4 ASP A 128 GLU A 147 1 20 HELIX 5 5 ASN A 173 VAL A 181 1 9 HELIX 6 6 THR A 183 THR A 193 1 11 SHEET 1 A10 ILE A 216 LEU A 218 0 SHEET 2 A10 ALA A 87 THR A 102 -1 N ILE A 100 O LEU A 218 SHEET 3 A10 MSE A 150 ASN A 158 -1 O THR A 157 N HIS A 96 SHEET 4 A10 ASN A 161 TYR A 171 -1 O GLU A 164 N ASN A 158 SHEET 5 A10 VAL A 116 VAL A 124 -1 N VAL A 122 O TRP A 165 SHEET 6 A10 VAL A 197 THR A 212 -1 O LYS A 198 N GLU A 123 SHEET 7 A10 THR A 40 ASP A 48 -1 N HIS A 47 O VAL A 206 SHEET 8 A10 HIS A 51 PHE A 61 -1 O TYR A 56 N GLY A 46 SHEET 9 A10 ILE A 6 ILE A 14 -1 N LEU A 12 O ASN A 55 SHEET 10 A10 ALA A 87 THR A 102 -1 O ILE A 93 N ILE A 9 LINK C ASN A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N HIS A 31 1555 1555 1.33 LINK C VAL A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N ARG A 118 1555 1555 1.34 LINK C GLU A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N THR A 141 1555 1555 1.33 LINK C SER A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N ALA A 145 1555 1555 1.34 LINK C GLY A 149 N MSE A 150 1555 1555 1.34 LINK C MSE A 150 N GLU A 151 1555 1555 1.33 LINK C ILE A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N SER A 155 1555 1555 1.32 LINK C GLY A 195 N MSE A 196 1555 1555 1.34 LINK C MSE A 196 N VAL A 197 1555 1555 1.33 CISPEP 1 ILE A 34 PRO A 35 0 2.52 SITE 1 AC1 6 GLU A 27 LYS A 28 THR A 141 THR A 142 SITE 2 AC1 6 HOH A 305 HOH A 313 CRYST1 103.380 103.380 40.970 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024408 0.00000 MASTER 367 0 9 6 10 0 2 6 0 0 0 17 END