HEADER TRANSFERASE/DNA 29-OCT-08 3F2C TITLE DNA POLYMERASE POLC FROM GEOBACILLUS KAUSTOPHILUS COMPLEX WITH DNA, TITLE 2 DGTP AND MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEOBACILLUS KAUSTOPHILUS DNA POLC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GKAPOLC, DELTA 1-227, DELTA 412-617; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*DCP*DAP*DGP*DTP*DGP*DAP*DGP*DAP*DCP*DGP*DGP*DGP*DCP*D COMPND 9 AP*DAP*DCP*DC)-3'; COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*DAP*DTP*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DCP*DCP*D COMPND 15 GP*DTP*DCP*DTP*DCP*DAP*DCP*DTP*DG)-3'; COMPND 16 CHAIN: T; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: DNA TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 1462; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 OTHER_DETAILS: PRIMER STRAND IS SYNTHETIC OLIGONUCLEOTIDE; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: TEMPLATE STRAND IS SYNTHETIC OLIGONUCLEOTIDE KEYWDS DNA POLYMERASE C, DNA POLYMERASE III, TERNARY COMPLEX, PROTEIN-DNA KEYWDS 2 COMPLEX, REPLICATIVE POLYMERASE, GRAM-POSITIVE, TRANSFERASE-DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.DAVIES,R.J.EVANS,J.M.BULLARD,J.CHRISTENSEN,L.S.GREEN,J.W.GUILES, AUTHOR 2 W.K.RIBBLE,N.JANJIC,T.C.JARVIS REVDAT 4 26-JUL-17 3F2C 1 SOURCE REMARK REVDAT 3 13-JUL-11 3F2C 1 VERSN REVDAT 2 02-MAR-10 3F2C 1 REMARK REVDAT 1 20-JAN-09 3F2C 0 JRNL AUTH R.J.EVANS,D.R.DAVIES,J.M.BULLARD,J.CHRISTENSEN,L.S.GREEN, JRNL AUTH 2 J.W.GUILES,J.D.PATA,W.K.RIBBLE,N.JANJIC,T.C.JARVIS JRNL TITL STRUCTURE OF POLC REVEALS UNIQUE DNA BINDING AND FIDELITY JRNL TITL 2 DETERMINANTS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 20695 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 19106298 JRNL DOI 10.1073/PNAS.0809989106 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 51791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2641 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7796 REMARK 3 NUCLEIC ACID ATOMS : 631 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.82000 REMARK 3 B22 (A**2) : 2.62000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.413 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.736 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8704 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11920 ; 1.452 ; 2.067 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 989 ; 5.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 361 ;38.351 ;24.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1387 ;20.096 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;20.862 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1333 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6338 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4940 ; 0.391 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7993 ; 0.772 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3764 ; 1.259 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3927 ; 2.079 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 233 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2084 11.9867 16.2396 REMARK 3 T TENSOR REMARK 3 T11: -0.0939 T22: -0.1244 REMARK 3 T33: -0.1570 T12: 0.0382 REMARK 3 T13: 0.0149 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 6.9397 L22: 3.4265 REMARK 3 L33: 4.3538 L12: 1.8614 REMARK 3 L13: -1.6834 L23: -2.2034 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: -0.1372 S13: 0.0471 REMARK 3 S21: 0.1947 S22: 0.1070 S23: 0.2260 REMARK 3 S31: -0.3788 S32: 0.0223 S33: -0.1547 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 332 A 411 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3642 -4.4753 46.4072 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: -0.0435 REMARK 3 T33: -0.1160 T12: 0.1902 REMARK 3 T13: 0.0805 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.5268 L22: 2.5295 REMARK 3 L33: 3.0740 L12: -0.2996 REMARK 3 L13: 0.6261 L23: -0.1010 REMARK 3 S TENSOR REMARK 3 S11: -0.1605 S12: -0.0300 S13: 0.1717 REMARK 3 S21: 0.1650 S22: 0.3536 S23: -0.0528 REMARK 3 S31: -0.6574 S32: -0.4296 S33: -0.1931 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 619 A 708 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8924 -12.4281 57.1160 REMARK 3 T TENSOR REMARK 3 T11: -0.0914 T22: 0.2818 REMARK 3 T33: -0.1948 T12: 0.3122 REMARK 3 T13: 0.1107 T23: 0.1050 REMARK 3 L TENSOR REMARK 3 L11: 1.7111 L22: 3.6482 REMARK 3 L33: 2.8538 L12: -0.0120 REMARK 3 L13: -0.7749 L23: 0.2808 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: -0.2165 S13: -0.1141 REMARK 3 S21: 0.4400 S22: 0.2442 S23: 0.3224 REMARK 3 S31: -0.3418 S32: -1.0216 S33: -0.1716 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 716 A 772 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6364 1.4188 48.9645 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.3369 REMARK 3 T33: -0.0921 T12: 0.5460 REMARK 3 T13: 0.1561 T23: 0.1148 REMARK 3 L TENSOR REMARK 3 L11: 0.6096 L22: 1.0290 REMARK 3 L33: 8.2219 L12: 0.1770 REMARK 3 L13: 1.5894 L23: 0.4039 REMARK 3 S TENSOR REMARK 3 S11: -0.2881 S12: -0.5017 S13: 0.0821 REMARK 3 S21: 0.3759 S22: 0.5005 S23: 0.2951 REMARK 3 S31: -0.8240 S32: -1.7698 S33: -0.2124 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 773 A 825 REMARK 3 ORIGIN FOR THE GROUP (A): 38.6683 -1.1783 53.3823 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: -0.0155 REMARK 3 T33: -0.1919 T12: 0.2770 REMARK 3 T13: 0.0434 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.7698 L22: 2.7929 REMARK 3 L33: 2.3983 L12: -1.0055 REMARK 3 L13: -0.1540 L23: -0.4005 REMARK 3 S TENSOR REMARK 3 S11: -0.2083 S12: -0.3267 S13: 0.1679 REMARK 3 S21: 0.5098 S22: 0.5394 S23: -0.3862 REMARK 3 S31: -0.7219 S32: -0.4012 S33: -0.3310 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 826 A 996 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6121 -44.6768 25.9865 REMARK 3 T TENSOR REMARK 3 T11: -0.0101 T22: -0.1509 REMARK 3 T33: -0.0512 T12: -0.0006 REMARK 3 T13: -0.0340 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.4144 L22: 1.2930 REMARK 3 L33: 2.8199 L12: -0.2406 REMARK 3 L13: -0.2327 L23: -0.1287 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: 0.0163 S13: -0.1739 REMARK 3 S21: -0.0492 S22: -0.0320 S23: -0.1285 REMARK 3 S31: 0.5638 S32: 0.1901 S33: -0.0569 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 997 A 1122 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3961 -24.5378 31.5109 REMARK 3 T TENSOR REMARK 3 T11: -0.1116 T22: 0.0499 REMARK 3 T33: -0.0683 T12: -0.0196 REMARK 3 T13: 0.0169 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 0.2428 L22: 0.7389 REMARK 3 L33: 0.3734 L12: 0.0222 REMARK 3 L13: 0.0115 L23: -0.1067 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0146 S13: -0.0782 REMARK 3 S21: -0.0185 S22: 0.1687 S23: 0.1499 REMARK 3 S31: 0.0546 S32: -0.2712 S33: -0.1875 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1123 A 1307 REMARK 3 ORIGIN FOR THE GROUP (A): 51.4769 -28.6095 9.8977 REMARK 3 T TENSOR REMARK 3 T11: -0.0558 T22: -0.0780 REMARK 3 T33: -0.0944 T12: -0.0408 REMARK 3 T13: 0.0233 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.9459 L22: 0.5855 REMARK 3 L33: 1.2568 L12: 0.6535 REMARK 3 L13: 0.5308 L23: -0.1364 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.1668 S13: -0.0080 REMARK 3 S21: -0.1406 S22: 0.0461 S23: -0.0466 REMARK 3 S31: -0.0699 S32: 0.0820 S33: -0.0456 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1308 A 1359 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5823 -30.3855 1.1107 REMARK 3 T TENSOR REMARK 3 T11: -0.0996 T22: -0.0148 REMARK 3 T33: -0.0931 T12: -0.0641 REMARK 3 T13: -0.0104 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 4.6777 L22: 5.3590 REMARK 3 L33: 3.8951 L12: 2.3403 REMARK 3 L13: 1.5058 L23: -1.0652 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: 0.3478 S13: 0.5815 REMARK 3 S21: -0.1575 S22: -0.0106 S23: 0.4480 REMARK 3 S31: -0.3113 S32: -0.4135 S33: 0.0483 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1360 A 1444 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0143 -45.2742 12.4399 REMARK 3 T TENSOR REMARK 3 T11: -0.0503 T22: 0.0533 REMARK 3 T33: -0.0866 T12: -0.1044 REMARK 3 T13: -0.0274 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 8.0754 L22: 0.9586 REMARK 3 L33: 0.2821 L12: 2.7721 REMARK 3 L13: -1.2153 L23: -0.3909 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: -0.4760 S13: -0.2170 REMARK 3 S21: 0.2034 S22: -0.1870 S23: -0.0248 REMARK 3 S31: -0.0115 S32: -0.0272 S33: 0.0882 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 5 P 17 REMARK 3 RESIDUE RANGE : T 1 T 18 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5739 -24.4585 19.9520 REMARK 3 T TENSOR REMARK 3 T11: -0.1237 T22: 0.1708 REMARK 3 T33: 0.1447 T12: -0.0816 REMARK 3 T13: -0.0485 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.6546 L22: 1.2605 REMARK 3 L33: 1.3780 L12: -0.8080 REMARK 3 L13: -0.4813 L23: 1.2704 REMARK 3 S TENSOR REMARK 3 S11: -0.1848 S12: -0.0209 S13: -0.1744 REMARK 3 S21: -0.1200 S22: -0.1999 S23: 0.4812 REMARK 3 S31: 0.3065 S32: -0.5138 S33: 0.3847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51829 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3F2B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 2000 MME, 0.1M PHOSPHATE REMARK 280 CITRATE, 200MM LITHIUM SULFATE, 2 MM MNCL2, PH 5.3, VAPOR REMARK 280 DIFFUSION , PH 5.30, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.94450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.59250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.94450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.59250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.37000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.94450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.59250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.37000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.94450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.59250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 227 REMARK 465 ARG A 228 REMARK 465 ASP A 229 REMARK 465 GLU A 230 REMARK 465 GLU A 231 REMARK 465 PRO A 232 REMARK 465 GLY A 412 REMARK 465 VAL A 413 REMARK 465 PRO A 414 REMARK 465 ILE A 415 REMARK 465 ALA A 416 REMARK 465 TYR A 417 REMARK 465 ASN A 418 REMARK 465 GLU A 419 REMARK 465 THR A 420 REMARK 465 HIS A 421 REMARK 465 ARG A 422 REMARK 465 ARG A 423 REMARK 465 LEU A 424 REMARK 465 GLY A 425 REMARK 465 SER A 426 REMARK 465 GLY A 427 REMARK 465 SER A 428 REMARK 465 GLY A 429 REMARK 465 LEU A 679 REMARK 465 ILE A 680 REMARK 465 GLN A 681 REMARK 465 LYS A 682 REMARK 465 ALA A 683 REMARK 465 PRO A 684 REMARK 465 GLU A 685 REMARK 465 GLU A 686 REMARK 465 ILE A 709 REMARK 465 GLU A 710 REMARK 465 MET A 711 REMARK 465 ASP A 712 REMARK 465 TYR A 713 REMARK 465 SER A 1445 REMARK 465 GLY A 1446 REMARK 465 GLY A 1447 REMARK 465 HIS A 1448 REMARK 465 HIS A 1449 REMARK 465 HIS A 1450 REMARK 465 HIS A 1451 REMARK 465 HIS A 1452 REMARK 465 HIS A 1453 REMARK 465 HIS A 1454 REMARK 465 HIS A 1455 REMARK 465 DC P 1 REMARK 465 DA P 2 REMARK 465 DG P 3 REMARK 465 DT P 4 REMARK 465 DA T 19 REMARK 465 DC T 20 REMARK 465 DT T 21 REMARK 465 DG T 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 330 CG OD1 ND2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 ARG A 648 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 706 CG CD CE NZ REMARK 470 LEU A 708 CG CD1 CD2 REMARK 470 VAL A 714 CG1 CG2 REMARK 470 LYS A 715 CG CD CE NZ REMARK 470 ARG A 770 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 771 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 969 CG OD1 OD2 REMARK 470 LYS A1232 CG CD CE NZ REMARK 470 DC P 17 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 947 OG1 THR A 949 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 725 CD ARG A 725 NE 0.152 REMARK 500 ARG A 725 NE ARG A 725 CZ 0.116 REMARK 500 ARG A 725 CZ ARG A 725 NH1 0.122 REMARK 500 ARG A 725 CZ ARG A 725 NH2 0.117 REMARK 500 DC P 16 O4' DC P 16 C1' -0.073 REMARK 500 DT T 8 O4' DT T 8 C1' 0.089 REMARK 500 DT T 8 O4' DT T 8 C4' -0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 725 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU A1441 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 DG P 7 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG P 12 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC P 16 C5' - C4' - O4' ANGL. DEV. = 10.0 DEGREES REMARK 500 DC P 16 O4' - C1' - N1 ANGL. DEV. = 12.6 DEGREES REMARK 500 DT T 8 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DT T 8 O4' - C4' - C3' ANGL. DEV. = 7.0 DEGREES REMARK 500 DT T 8 C5' - C4' - O4' ANGL. DEV. = 11.3 DEGREES REMARK 500 DT T 8 N1 - C1' - C2' ANGL. DEV. = -23.7 DEGREES REMARK 500 DT T 8 O4' - C1' - N1 ANGL. DEV. = 20.3 DEGREES REMARK 500 DT T 8 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC T 13 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT T 15 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT T 15 C4 - C5 - C7 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT T 15 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DC T 16 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DT T 17 C4' - C3' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT T 17 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DC T 18 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC T 18 N1 - C2 - O2 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 274 2.14 83.52 REMARK 500 ASN A 276 -167.96 -168.39 REMARK 500 ASN A 330 68.27 30.50 REMARK 500 ARG A 332 118.99 -32.12 REMARK 500 GLN A 353 119.10 -28.35 REMARK 500 ALA A 381 -5.50 62.21 REMARK 500 LEU A 404 126.20 -175.07 REMARK 500 ILE A 643 -88.89 -110.55 REMARK 500 HIS A 647 -90.39 -96.10 REMARK 500 CYS A 670 -172.21 -58.38 REMARK 500 ASP A 677 19.24 -69.58 REMARK 500 PRO A 707 105.91 -57.54 REMARK 500 PRO A 767 54.61 25.00 REMARK 500 VAL A 801 -54.47 -120.37 REMARK 500 ASN A 921 -76.93 -107.77 REMARK 500 LYS A 923 10.09 80.66 REMARK 500 ASP A 930 -18.75 -47.38 REMARK 500 PRO A 945 7.68 -58.18 REMARK 500 MET A1061 -166.32 -120.83 REMARK 500 GLN A1070 -168.13 -171.44 REMARK 500 ALA A1073 15.34 53.43 REMARK 500 HIS A1091 -35.65 -36.22 REMARK 500 ASP A1125 30.67 -148.73 REMARK 500 CYS A1148 142.62 -170.45 REMARK 500 GLU A1157 -43.89 70.60 REMARK 500 ARG A1171 58.33 37.43 REMARK 500 ASN A1194 -103.81 -140.46 REMARK 500 GLU A1307 -1.79 -140.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 3 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 405 OE2 REMARK 620 2 ASN A 743 OD1 148.0 REMARK 620 3 HIS A 346 NE2 87.0 69.5 REMARK 620 4 HIS A 348 NE2 78.7 83.6 98.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 2 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 670 SG REMARK 620 2 HIS A 620 ND1 165.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 919 SG REMARK 620 2 CYS A 922 SG 111.1 REMARK 620 3 CYS A 944 SG 119.2 91.1 REMARK 620 4 CYS A 947 SG 87.0 121.2 129.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 1 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 973 OD2 REMARK 620 2 ASP A 975 OD2 89.9 REMARK 620 3 DGT A1456 O1B 168.3 92.7 REMARK 620 4 HOH A1457 O 78.6 84.9 90.3 REMARK 620 5 DGT A1456 O2A 95.1 99.3 95.6 172.5 REMARK 620 6 DGT A1456 O2G 89.1 174.2 87.1 89.4 86.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A1456 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F2B RELATED DB: PDB REMARK 900 SAME PROTEIN-DNA COMPLEX CRYSTALLIZED WITH MG AND ZN REMARK 900 RELATED ID: 3F2D RELATED DB: PDB REMARK 900 SAME PROTEIN-DNA COMPLEX CRYSTALLIZED WITH COMPLEX WITH DGTP, MN REMARK 900 AND ZN DBREF 3F2C A 228 424 UNP Q5L0J3 Q5L0J3_GEOKA 227 423 DBREF 3F2C A 618 1444 UNP Q5L0J3 Q5L0J3_GEOKA 618 1444 DBREF 3F2C P 1 17 PDB 3F2C 3F2C 1 17 DBREF 3F2C T 1 22 PDB 3F2C 3F2C 1 22 SEQADV 3F2C MET A 227 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C GLY A 425 UNP Q5L0J3 LINKER SEQADV 3F2C SER A 426 UNP Q5L0J3 LINKER SEQADV 3F2C GLY A 427 UNP Q5L0J3 LINKER SEQADV 3F2C SER A 428 UNP Q5L0J3 LINKER SEQADV 3F2C GLY A 429 UNP Q5L0J3 LINKER SEQADV 3F2C SER A 1445 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C GLY A 1446 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C GLY A 1447 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C HIS A 1448 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C HIS A 1449 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C HIS A 1450 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C HIS A 1451 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C HIS A 1452 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C HIS A 1453 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C HIS A 1454 UNP Q5L0J3 EXPRESSION TAG SEQADV 3F2C HIS A 1455 UNP Q5L0J3 EXPRESSION TAG SEQRES 1 A 1041 MET ARG ASP GLU GLU PRO VAL ARG ARG LEU GLU THR ILE SEQRES 2 A 1041 VAL GLU GLU GLU ARG ARG VAL VAL VAL GLN GLY TYR VAL SEQRES 3 A 1041 PHE ASP ALA GLU VAL SER GLU LEU LYS SER GLY ARG THR SEQRES 4 A 1041 LEU LEU THR MET LYS ILE THR ASP TYR THR ASN SER ILE SEQRES 5 A 1041 LEU VAL LYS MET PHE SER ARG ASP LYS GLU ASP ALA GLU SEQRES 6 A 1041 LEU MET SER GLY VAL LYS LYS GLY MET TRP VAL LYS VAL SEQRES 7 A 1041 ARG GLY SER VAL GLN ASN ASP THR PHE VAL ARG ASP LEU SEQRES 8 A 1041 VAL ILE ILE ALA ASN ASP LEU ASN GLU ILE ALA ALA ASN SEQRES 9 A 1041 GLU ARG GLN ASP THR ALA PRO GLU GLY GLU LYS ARG VAL SEQRES 10 A 1041 GLU LEU HIS LEU HIS THR PRO MET SER GLN MET ASP ALA SEQRES 11 A 1041 VAL THR SER VAL THR LYS LEU ILE GLU GLN ALA LYS LYS SEQRES 12 A 1041 TRP GLY HIS PRO ALA ILE ALA VAL THR ASP HIS ALA VAL SEQRES 13 A 1041 VAL GLN SER PHE PRO GLU ALA TYR SER ALA ALA LYS LYS SEQRES 14 A 1041 HIS GLY MET LYS VAL ILE TYR GLY LEU GLU ALA ASN ILE SEQRES 15 A 1041 VAL ASP ASP GLY VAL PRO ILE ALA TYR ASN GLU THR HIS SEQRES 16 A 1041 ARG ARG LEU GLY SER GLY SER GLY PRO PHE HIS VAL THR SEQRES 17 A 1041 LEU LEU ALA GLN ASN GLU THR GLY LEU LYS ASN LEU PHE SEQRES 18 A 1041 LYS LEU VAL SER LEU SER HIS ILE GLN TYR PHE HIS ARG SEQRES 19 A 1041 VAL PRO ARG ILE PRO ARG SER VAL LEU VAL LYS HIS ARG SEQRES 20 A 1041 ASP GLY LEU LEU VAL GLY SER GLY CYS ASP LYS GLY GLU SEQRES 21 A 1041 LEU PHE ASP ASN LEU ILE GLN LYS ALA PRO GLU GLU VAL SEQRES 22 A 1041 GLU ASP ILE ALA ARG PHE TYR ASP PHE LEU GLU VAL HIS SEQRES 23 A 1041 PRO PRO ASP VAL TYR LYS PRO LEU ILE GLU MET ASP TYR SEQRES 24 A 1041 VAL LYS ASP GLU GLU MET ILE LYS ASN ILE ILE ARG SER SEQRES 25 A 1041 ILE VAL ALA LEU GLY GLU LYS LEU ASP ILE PRO VAL VAL SEQRES 26 A 1041 ALA THR GLY ASN VAL HIS TYR LEU ASN PRO GLU ASP LYS SEQRES 27 A 1041 ILE TYR ARG LYS ILE LEU ILE HIS SER GLN GLY GLY ALA SEQRES 28 A 1041 ASN PRO LEU ASN ARG HIS GLU LEU PRO ASP VAL TYR PHE SEQRES 29 A 1041 ARG THR THR ASN GLU MET LEU ASP CYS PHE SER PHE LEU SEQRES 30 A 1041 GLY PRO GLU LYS ALA LYS GLU ILE VAL VAL ASP ASN THR SEQRES 31 A 1041 GLN LYS ILE ALA SER LEU ILE GLY ASP VAL LYS PRO ILE SEQRES 32 A 1041 LYS ASP GLU LEU TYR THR PRO ARG ILE GLU GLY ALA ASP SEQRES 33 A 1041 GLU GLU ILE ARG GLU MET SER TYR ARG ARG ALA LYS GLU SEQRES 34 A 1041 ILE TYR GLY ASP PRO LEU PRO LYS LEU VAL GLU GLU ARG SEQRES 35 A 1041 LEU GLU LYS GLU LEU LYS SER ILE ILE GLY HIS GLY PHE SEQRES 36 A 1041 ALA VAL ILE TYR LEU ILE SER HIS LYS LEU VAL LYS LYS SEQRES 37 A 1041 SER LEU ASP ASP GLY TYR LEU VAL GLY SER ARG GLY SER SEQRES 38 A 1041 VAL GLY SER SER PHE VAL ALA THR MET THR GLU ILE THR SEQRES 39 A 1041 GLU VAL ASN PRO LEU PRO PRO HIS TYR VAL CYS PRO ASN SEQRES 40 A 1041 CYS LYS HIS SER GLU PHE PHE ASN ASP GLY SER VAL GLY SEQRES 41 A 1041 SER GLY PHE ASP LEU PRO ASP LYS ASN CYS PRO ARG CYS SEQRES 42 A 1041 GLY THR LYS TYR LYS LYS ASP GLY HIS ASP ILE PRO PHE SEQRES 43 A 1041 GLU THR PHE LEU GLY PHE LYS GLY ASP LYS VAL PRO ASP SEQRES 44 A 1041 ILE ASP LEU ASN PHE SER GLY GLU TYR GLN PRO ARG ALA SEQRES 45 A 1041 HIS ASN TYR THR LYS VAL LEU PHE GLY GLU ASP ASN VAL SEQRES 46 A 1041 TYR ARG ALA GLY THR ILE GLY THR VAL ALA ASP LYS THR SEQRES 47 A 1041 ALA TYR GLY PHE VAL LYS ALA TYR ALA SER ASP HIS ASN SEQRES 48 A 1041 LEU GLU LEU ARG GLY ALA GLU ILE ASP ARG LEU ALA ALA SEQRES 49 A 1041 GLY CYS THR GLY VAL LYS ARG THR THR GLY GLN HIS PRO SEQRES 50 A 1041 GLY GLY ILE ILE VAL VAL PRO ASP TYR MET GLU ILE TYR SEQRES 51 A 1041 ASP PHE THR PRO ILE GLN TYR PRO ALA ASP ASP THR SER SEQRES 52 A 1041 SER GLU TRP ARG THR THR HIS PHE ASP PHE HIS SER ILE SEQRES 53 A 1041 HIS ASP ASN LEU LEU LYS LEU ASP ILE LEU GLY HIS ASP SEQRES 54 A 1041 ASP PRO THR VAL ILE ARG MET LEU GLN ASP LEU SER GLY SEQRES 55 A 1041 ILE ASP PRO LYS THR ILE PRO THR ASP ASP PRO ASP VAL SEQRES 56 A 1041 MET GLY ILE PHE SER SER THR GLU PRO LEU GLY VAL THR SEQRES 57 A 1041 PRO GLU GLN ILE MET CYS ASN VAL GLY THR ILE GLY ILE SEQRES 58 A 1041 PRO GLU PHE GLY THR ARG PHE VAL ARG GLN MET LEU GLU SEQRES 59 A 1041 GLU THR ARG PRO LYS THR PHE SER GLU LEU VAL GLN ILE SEQRES 60 A 1041 SER GLY LEU SER HIS GLY THR ASP VAL TRP LEU GLY ASN SEQRES 61 A 1041 ALA GLN GLU LEU ILE GLN ASN GLY THR CYS THR LEU SER SEQRES 62 A 1041 GLU VAL ILE GLY CYS ARG ASP ASP ILE MET VAL TYR LEU SEQRES 63 A 1041 ILE TYR ARG GLY LEU GLU PRO SER LEU ALA PHE LYS ILE SEQRES 64 A 1041 MET GLU SER VAL ARG LYS GLY LYS GLY LEU THR PRO GLU SEQRES 65 A 1041 PHE GLU ALA GLU MET ARG LYS HIS ASP VAL PRO GLU TRP SEQRES 66 A 1041 TYR ILE ASP SER CYS LYS LYS ILE LYS TYR MET PHE PRO SEQRES 67 A 1041 LYS ALA HIS ALA ALA ALA TYR VAL LEU MET ALA VAL ARG SEQRES 68 A 1041 ILE ALA TYR PHE LYS VAL HIS HIS PRO LEU LEU TYR TYR SEQRES 69 A 1041 ALA SER TYR PHE THR VAL ARG ALA GLU ASP PHE ASP LEU SEQRES 70 A 1041 ASP ALA MET ILE LYS GLY SER ALA ALA ILE ARG LYS ARG SEQRES 71 A 1041 ILE GLU GLU ILE ASN ALA LYS GLY ILE GLN ALA THR ALA SEQRES 72 A 1041 LYS GLU LYS SER LEU LEU THR VAL LEU GLU VAL ALA LEU SEQRES 73 A 1041 GLU MET CYS GLU ARG GLY PHE SER PHE LYS ASN ILE ASP SEQRES 74 A 1041 LEU TYR ARG SER GLN ALA THR GLU PHE VAL ILE ASP GLY SEQRES 75 A 1041 ASN SER LEU ILE PRO PRO PHE ASN ALA ILE PRO GLY LEU SEQRES 76 A 1041 GLY THR ASN VAL ALA GLN ALA ILE VAL ARG ALA ARG GLU SEQRES 77 A 1041 GLU GLY GLU PHE LEU SER LYS GLU ASP LEU GLN GLN ARG SEQRES 78 A 1041 GLY LYS LEU SER LYS THR LEU LEU GLU TYR LEU GLU SER SEQRES 79 A 1041 ARG GLY CYS LEU ASP SER LEU PRO ASP HIS ASN GLN LEU SEQRES 80 A 1041 SER LEU PHE SER GLY GLY HIS HIS HIS HIS HIS HIS HIS SEQRES 81 A 1041 HIS SEQRES 1 P 17 DC DA DG DT DG DA DG DA DC DG DG DG DC SEQRES 2 P 17 DA DA DC DC SEQRES 1 T 22 DA DT DA DA DC DG DG DT DT DG DC DC DC SEQRES 2 T 22 DG DT DC DT DC DA DC DT DG HET MN A 1 1 HET MN A 2 1 HET MN A 3 1 HET ZN A 4 1 HET SO4 A 5 5 HET DGT A1456 31 HETNAM MN MANGANESE (II) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE FORMUL 4 MN 3(MN 2+) FORMUL 7 ZN ZN 2+ FORMUL 8 SO4 O4 S 2- FORMUL 9 DGT C10 H16 N5 O13 P3 FORMUL 10 HOH *155(H2 O) HELIX 1 1 ARG A 235 ILE A 239 5 5 HELIX 2 2 ASP A 286 SER A 294 1 9 HELIX 3 3 SER A 359 GLY A 371 1 13 HELIX 4 4 SER A 385 GLY A 397 1 13 HELIX 5 5 ASN A 627 ILE A 643 1 17 HELIX 6 6 ARG A 654 HIS A 660 1 7 HELIX 7 7 GLU A 688 PHE A 693 1 6 HELIX 8 8 PRO A 701 LYS A 706 5 6 HELIX 9 9 ASP A 716 LEU A 734 1 19 HELIX 10 10 ASN A 748 GLU A 750 5 3 HELIX 11 11 ASP A 751 SER A 761 1 11 HELIX 12 12 GLN A 762 ASN A 766 5 5 HELIX 13 13 THR A 780 PHE A 788 1 9 HELIX 14 14 SER A 789 LEU A 791 5 3 HELIX 15 15 GLY A 792 VAL A 801 1 10 HELIX 16 16 VAL A 801 LEU A 810 1 10 HELIX 17 17 GLY A 828 GLY A 846 1 19 HELIX 18 18 PRO A 850 HIS A 867 1 18 HELIX 19 19 PHE A 869 ASP A 886 1 18 HELIX 20 20 GLY A 894 SER A 898 5 5 HELIX 21 21 SER A 899 THR A 905 1 7 HELIX 22 22 SER A 935 LEU A 939 5 5 HELIX 23 23 PHE A 960 GLY A 965 1 6 HELIX 24 24 TYR A 982 GLY A 995 1 14 HELIX 25 25 ALA A 1009 HIS A 1024 1 16 HELIX 26 26 ARG A 1029 THR A 1041 1 13 HELIX 27 27 GLU A 1062 PHE A 1066 5 5 HELIX 28 28 TYR A 1071 ASP A 1075 5 5 HELIX 29 29 ASP A 1086 HIS A 1091 1 6 HELIX 30 30 ASP A 1103 GLY A 1116 1 14 HELIX 31 31 ASP A 1118 ILE A 1122 5 5 HELIX 32 32 ASP A 1126 GLY A 1131 1 6 HELIX 33 33 ILE A 1132 SER A 1134 5 3 HELIX 34 34 THR A 1136 GLY A 1140 5 5 HELIX 35 35 THR A 1142 MET A 1147 1 6 HELIX 36 36 THR A 1160 ARG A 1171 1 12 HELIX 37 37 THR A 1174 SER A 1185 1 12 HELIX 38 38 ASN A 1194 ASN A 1201 1 8 HELIX 39 39 THR A 1205 VAL A 1209 5 5 HELIX 40 40 CYS A 1212 ARG A 1223 1 12 HELIX 41 41 GLU A 1226 LYS A 1239 1 14 HELIX 42 42 THR A 1244 HIS A 1254 1 11 HELIX 43 43 PRO A 1257 ILE A 1267 1 11 HELIX 44 44 PRO A 1272 HIS A 1293 1 22 HELIX 45 45 HIS A 1293 ARG A 1305 1 13 HELIX 46 46 ASP A 1310 GLY A 1317 1 8 HELIX 47 47 GLY A 1317 ALA A 1330 1 14 HELIX 48 48 LYS A 1331 ALA A 1335 5 5 HELIX 49 49 THR A 1336 ARG A 1355 1 20 HELIX 50 50 PRO A 1382 ILE A 1386 5 5 HELIX 51 51 GLY A 1390 GLY A 1404 1 15 HELIX 52 52 SER A 1408 GLY A 1416 1 9 HELIX 53 53 SER A 1419 ARG A 1429 1 11 SHEET 1 A 6 GLU A 243 GLU A 259 0 SHEET 2 A 6 THR A 265 THR A 272 -1 O LEU A 266 N SER A 258 SHEET 3 A 6 SER A 277 PHE A 283 -1 O VAL A 280 N MET A 269 SHEET 4 A 6 ASP A 316 ILE A 327 1 O ILE A 319 N LYS A 281 SHEET 5 A 6 TRP A 301 ASP A 311 -1 N SER A 307 O ILE A 320 SHEET 6 A 6 GLU A 243 GLU A 259 -1 N GLU A 243 O VAL A 308 SHEET 1 B 3 ILE A 375 VAL A 377 0 SHEET 2 B 3 VAL A 400 VAL A 409 1 O ILE A 401 N ILE A 375 SHEET 3 B 3 ILE A 652 PRO A 653 1 O ILE A 652 N ASN A 407 SHEET 1 C 4 ILE A 375 VAL A 377 0 SHEET 2 C 4 VAL A 400 VAL A 409 1 O ILE A 401 N ILE A 375 SHEET 3 C 4 PHE A 619 ALA A 625 -1 O LEU A 623 N LEU A 404 SHEET 4 C 4 LEU A 664 GLY A 667 -1 O GLY A 667 N THR A 622 SHEET 1 D 2 LEU A 697 VAL A 699 0 SHEET 2 D 2 VAL A 738 ALA A 740 1 O VAL A 739 N LEU A 697 SHEET 1 E 5 GLY A 891 SER A 892 0 SHEET 2 E 5 ILE A 974 SER A 979 -1 O ASN A 977 N GLY A 891 SHEET 3 E 5 LYS A1096 HIS A1102 1 O LEU A1100 N LEU A 976 SHEET 4 E 5 LYS A1044 VAL A1056 -1 N ILE A1054 O LEU A1097 SHEET 5 E 5 VAL A 999 THR A1007 -1 N GLY A1006 O ARG A1045 SHEET 1 F 3 SER A 925 PHE A 927 0 SHEET 2 F 3 HIS A 916 VAL A 918 -1 N TYR A 917 O GLU A 926 SHEET 3 F 3 LYS A 952 ASP A 954 -1 O LYS A 952 N VAL A 918 SHEET 1 G 2 ILE A1069 GLN A1070 0 SHEET 2 G 2 THR A1082 THR A1083 -1 O THR A1082 N GLN A1070 SHEET 1 H 3 SER A1358 PHE A1359 0 SHEET 2 H 3 SER A1378 ILE A1380 1 O LEU A1379 N SER A1358 SHEET 3 H 3 VAL A1373 ASP A1375 -1 N ASP A1375 O SER A1378 LINK OE2 GLU A 405 MN MN A 3 1555 1555 2.09 LINK SG CYS A 670 MN MN A 2 1555 1555 2.41 LINK OD1 ASN A 743 MN MN A 3 1555 1555 2.29 LINK SG CYS A 919 ZN ZN A 4 1555 1555 2.59 LINK SG CYS A 922 ZN ZN A 4 1555 1555 2.19 LINK SG CYS A 944 ZN ZN A 4 1555 1555 2.25 LINK SG CYS A 947 ZN ZN A 4 1555 1555 2.70 LINK OD2 ASP A 973 MN MN A 1 1555 1555 2.05 LINK OD2 ASP A 975 MN MN A 1 1555 1555 2.11 LINK MN MN A 1 O1B DGT A1456 1555 1555 2.06 LINK MN MN A 1 O HOH A1457 1555 1555 2.17 LINK MN MN A 1 O2A DGT A1456 1555 1555 2.04 LINK MN MN A 1 O2G DGT A1456 1555 1555 2.23 LINK ND1 HIS A 620 MN MN A 2 1555 1555 2.17 LINK NE2 HIS A 346 MN MN A 3 1555 1555 2.34 LINK NE2 HIS A 348 MN MN A 3 1555 1555 2.53 CISPEP 1 ASP A 847 PRO A 848 0 3.49 SITE 1 AC1 4 ASP A 973 ASP A 975 DGT A1456 HOH A1457 SITE 1 AC2 5 MN A 3 SO4 A 5 GLU A 405 HIS A 620 SITE 2 AC2 5 CYS A 670 SITE 1 AC3 7 MN A 2 SO4 A 5 HIS A 346 HIS A 348 SITE 2 AC3 7 GLU A 405 CYS A 670 ASN A 743 SITE 1 AC4 5 CYS A 919 CYS A 922 CYS A 944 CYS A 947 SITE 2 AC4 5 THR A 949 SITE 1 AC5 9 MN A 2 MN A 3 HIS A 348 ASP A 355 SITE 2 AC5 9 GLU A 405 HIS A 620 LYS A 672 ASN A 743 SITE 3 AC5 9 HIS A 745 SITE 1 AC6 25 MN A 1 HOH A 7 HOH A 105 HOH A 124 SITE 2 AC6 25 HOH A 135 HOH A 144 HOH A 155 ARG A 893 SITE 3 AC6 25 GLY A 894 SER A 895 LYS A 970 PRO A 972 SITE 4 AC6 25 ASP A 973 ASP A 975 HIS A1186 ARG A1213 SITE 5 AC6 25 ARG A1238 TYR A1269 PHE A1271 PRO A1272 SITE 6 AC6 25 HIS A1275 HOH A1457 DC P 17 DC T 5 SITE 7 AC6 25 DG T 6 CRYST1 115.889 141.185 184.740 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005413 0.00000 MASTER 732 0 6 53 28 0 17 6 0 0 0 85 END