HEADER PROTEIN BINDING, METHYL-LYSINE-BINDING P09-OCT-08 3EU9 TITLE THE ANKYRIN REPEAT DOMAIN OF HUNTINGTIN INTERACTING PROTEIN 14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUNTINGTIN-INTERACTING PROTEIN 14; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: ANKYRIN REPEATS; COMPND 5 SYNONYM: HIP14, PALMITOYLTRANSFERASE ZDHHC17, ZINC FINGER DHHC COMPND 6 DOMAIN-CONTAINING PROTEIN 17, DHHC-17, HUNTINGTIN-INTERACTING PROTEIN COMPND 7 3, HUNTINGTIN-INTERACTING PROTEIN H, HUNTINGTIN YEAST PARTNER H, COMPND 8 PUTATIVE NF-KAPPA-B-ACTIVATING PROTEIN 205, PUTATIVE MAPK-ACTIVATING COMPND 9 PROTEIN PM11; COMPND 10 EC: 2.3.1.-; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZDHHC17, HIP14, HIP3, HYPH, KIAA0946, HSPC294; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28B; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PXC650 KEYWDS EPIGENETICS; ANKYRIN REPEATS; METHYLLYINE BINDING; HUNTINGTIN KEYWDS 2 INTERACTING PROTEIN 14, ACYLTRANSFERASE, ANK REPEAT, CYTOPLASMIC KEYWDS 3 VESICLE, GOLGI APPARATUS, MEMBRANE, METAL-BINDING, ONCOGENE, KEYWDS 4 PHOSPHOPROTEIN, TRANSFERASE, TRANSMEMBRANE, ZINC-FINGER, PROTEIN KEYWDS 5 BINDING, METHYL-LYSINE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.GAO,R.E.COLLINS,J.R.HORTON,R.ZHANG,X.ZHANG,X.CHENG REVDAT 3 13-JUL-11 3EU9 1 VERSN REVDAT 2 21-JUL-09 3EU9 1 JRNL REVDAT 1 23-JUN-09 3EU9 0 JRNL AUTH T.GAO,R.E.COLLINS,J.R.HORTON,X.ZHANG,R.ZHANG,A.DHAYALAN, JRNL AUTH 2 R.TAMAS,A.JELTSCH,X.CHENG JRNL TITL THE ANKYRIN REPEAT DOMAIN OF HUNTINGTIN INTERACTING PROTEIN JRNL TITL 2 14 CONTAINS A SURFACE AROMATIC CAGE, A POTENTIAL SITE FOR JRNL TITL 3 METHYL-LYSINE BINDING. JRNL REF PROTEINS V. 76 772 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19434754 JRNL DOI 10.1002/PROT.22452 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 553241.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 58266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2937 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4980 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 275 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19700 REMARK 3 B22 (A**2) : 0.19700 REMARK 3 B33 (A**2) : -0.39500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 34.30 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.75 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL ANISOTROPIC B VALUE REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.928 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.521 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.349 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.019 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 61.88 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-08. REMARK 100 THE RCSB ID CODE IS RCSB049774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59687 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM (NH4)2SO4, 25% POLYETHYLENE REMARK 280 GLYCOL (PEG) 3350, 0.1M BIS-TRIS, PH 5.5. , VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.17667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 170.35333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.76500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 212.94167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.58833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.17667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 170.35333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 212.94167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.76500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.58833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT CONTAINS THREE MONOMER REMARK 300 MOLECULES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -224.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -42.58833 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 347 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 49 REMARK 465 GLN A 282 REMARK 465 ALA A 283 REMARK 465 LYS A 284 REMARK 465 GLY A 285 REMARK 465 TYR A 286 REMARK 465 ASP A 287 REMARK 465 ASN A 288 REMARK 465 HIS B 49 REMARK 465 MET B 50 REMARK 465 THR B 51 REMARK 465 HIS B 52 REMARK 465 ALA B 280 REMARK 465 ARG B 281 REMARK 465 GLN B 282 REMARK 465 ALA B 283 REMARK 465 LYS B 284 REMARK 465 GLY B 285 REMARK 465 TYR B 286 REMARK 465 ASP B 287 REMARK 465 ASN B 288 REMARK 465 HIS C 49 REMARK 465 MET C 50 REMARK 465 THR C 51 REMARK 465 HIS C 52 REMARK 465 ILE C 53 REMARK 465 ASP C 54 REMARK 465 ASP C 55 REMARK 465 TYR C 56 REMARK 465 SER C 57 REMARK 465 THR C 58 REMARK 465 GLY C 285 REMARK 465 TYR C 286 REMARK 465 ASP C 287 REMARK 465 ASN C 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 50 CG SD CE REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 ASN A 214 CG OD1 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 VAL A 271 CG1 CG2 REMARK 470 TRP A 272 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 272 CZ3 CH2 REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 VAL B 183 CG1 CG2 REMARK 470 LEU B 219 CG CD1 CD2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 TYR B 223 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS B 224 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 VAL B 251 CG1 CG2 REMARK 470 GLN B 254 CG CD OE1 NE2 REMARK 470 ASN B 255 CG OD1 REMARK 470 ILE B 256 CG1 CG2 CD1 REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 SER B 260 OG REMARK 470 LEU B 262 CG CD1 CD2 REMARK 470 ASP B 263 CG OD1 OD2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 GLN B 267 CG CD OE1 NE2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 VAL B 271 CG1 CG2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 GLU C 71 CG CD OE1 OE2 REMARK 470 GLU C 75 CG CD OE1 OE2 REMARK 470 LYS C 88 CG CD CE NZ REMARK 470 GLU C 246 CG CD OE1 OE2 REMARK 470 LYS C 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 -8.30 -55.46 REMARK 500 ASP A 117 31.86 -99.14 REMARK 500 ASP B 54 40.33 -95.02 REMARK 500 ASP B 55 76.86 80.34 REMARK 500 ASN B 90 35.81 72.94 REMARK 500 ASN B 124 72.00 45.58 REMARK 500 GLN B 181 137.22 -38.41 REMARK 500 GLN B 188 7.33 -64.75 REMARK 500 PHE B 213 29.06 -79.96 REMARK 500 ASN B 214 65.63 38.58 REMARK 500 LYS B 222 -79.03 -75.43 REMARK 500 TYR B 223 -77.55 -41.37 REMARK 500 ILE B 256 16.15 -69.57 REMARK 500 SER B 260 51.84 -110.00 REMARK 500 ALA B 261 -80.18 58.47 REMARK 500 ASN C 124 68.24 36.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 444 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A 446 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH A 454 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A 459 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A 461 DISTANCE = 5.45 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HIS A 322 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 325 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B95 RELATED DB: PDB REMARK 900 THE ANKYRIN REPEATS OF G9A-LIKE PROTEIN (GLP) DBREF 3EU9 A 51 288 UNP Q8IUH5 ZDH17_HUMAN 51 288 DBREF 3EU9 B 51 288 UNP Q8IUH5 ZDH17_HUMAN 51 288 DBREF 3EU9 C 51 288 UNP Q8IUH5 ZDH17_HUMAN 51 288 SEQADV 3EU9 HIS A 49 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 MET A 50 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 HIS B 49 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 MET B 50 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 HIS C 49 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 MET C 50 UNP Q8IUH5 EXPRESSION TAG SEQRES 1 A 240 HIS MET THR HIS ILE ASP ASP TYR SER THR TRP ASP ILE SEQRES 2 A 240 VAL LYS ALA THR GLN TYR GLY ILE TYR GLU ARG CYS ARG SEQRES 3 A 240 GLU LEU VAL GLU ALA GLY TYR ASP VAL ARG GLN PRO ASP SEQRES 4 A 240 LYS GLU ASN VAL THR LEU LEU HIS TRP ALA ALA ILE ASN SEQRES 5 A 240 ASN ARG ILE ASP LEU VAL LYS TYR TYR ILE SER LYS GLY SEQRES 6 A 240 ALA ILE VAL ASP GLN LEU GLY GLY ASP LEU ASN SER THR SEQRES 7 A 240 PRO LEU HIS TRP ALA THR ARG GLN GLY HIS LEU SER MET SEQRES 8 A 240 VAL VAL GLN LEU MET LYS TYR GLY ALA ASP PRO SER LEU SEQRES 9 A 240 ILE ASP GLY GLU GLY CYS SER CYS ILE HIS LEU ALA ALA SEQRES 10 A 240 GLN PHE GLY HIS THR SER ILE VAL ALA TYR LEU ILE ALA SEQRES 11 A 240 LYS GLY GLN ASP VAL ASP MET MET ASP GLN ASN GLY MET SEQRES 12 A 240 THR PRO LEU MET TRP ALA ALA TYR ARG THR HIS SER VAL SEQRES 13 A 240 ASP PRO THR ARG LEU LEU LEU THR PHE ASN VAL SER VAL SEQRES 14 A 240 ASN LEU GLY ASP LYS TYR HIS LYS ASN THR ALA LEU HIS SEQRES 15 A 240 TRP ALA VAL LEU ALA GLY ASN THR THR VAL ILE SER LEU SEQRES 16 A 240 LEU LEU GLU ALA GLY ALA ASN VAL ASP ALA GLN ASN ILE SEQRES 17 A 240 LYS GLY GLU SER ALA LEU ASP LEU ALA LYS GLN ARG LYS SEQRES 18 A 240 ASN VAL TRP MET ILE ASN HIS LEU GLN GLU ALA ARG GLN SEQRES 19 A 240 ALA LYS GLY TYR ASP ASN SEQRES 1 B 240 HIS MET THR HIS ILE ASP ASP TYR SER THR TRP ASP ILE SEQRES 2 B 240 VAL LYS ALA THR GLN TYR GLY ILE TYR GLU ARG CYS ARG SEQRES 3 B 240 GLU LEU VAL GLU ALA GLY TYR ASP VAL ARG GLN PRO ASP SEQRES 4 B 240 LYS GLU ASN VAL THR LEU LEU HIS TRP ALA ALA ILE ASN SEQRES 5 B 240 ASN ARG ILE ASP LEU VAL LYS TYR TYR ILE SER LYS GLY SEQRES 6 B 240 ALA ILE VAL ASP GLN LEU GLY GLY ASP LEU ASN SER THR SEQRES 7 B 240 PRO LEU HIS TRP ALA THR ARG GLN GLY HIS LEU SER MET SEQRES 8 B 240 VAL VAL GLN LEU MET LYS TYR GLY ALA ASP PRO SER LEU SEQRES 9 B 240 ILE ASP GLY GLU GLY CYS SER CYS ILE HIS LEU ALA ALA SEQRES 10 B 240 GLN PHE GLY HIS THR SER ILE VAL ALA TYR LEU ILE ALA SEQRES 11 B 240 LYS GLY GLN ASP VAL ASP MET MET ASP GLN ASN GLY MET SEQRES 12 B 240 THR PRO LEU MET TRP ALA ALA TYR ARG THR HIS SER VAL SEQRES 13 B 240 ASP PRO THR ARG LEU LEU LEU THR PHE ASN VAL SER VAL SEQRES 14 B 240 ASN LEU GLY ASP LYS TYR HIS LYS ASN THR ALA LEU HIS SEQRES 15 B 240 TRP ALA VAL LEU ALA GLY ASN THR THR VAL ILE SER LEU SEQRES 16 B 240 LEU LEU GLU ALA GLY ALA ASN VAL ASP ALA GLN ASN ILE SEQRES 17 B 240 LYS GLY GLU SER ALA LEU ASP LEU ALA LYS GLN ARG LYS SEQRES 18 B 240 ASN VAL TRP MET ILE ASN HIS LEU GLN GLU ALA ARG GLN SEQRES 19 B 240 ALA LYS GLY TYR ASP ASN SEQRES 1 C 240 HIS MET THR HIS ILE ASP ASP TYR SER THR TRP ASP ILE SEQRES 2 C 240 VAL LYS ALA THR GLN TYR GLY ILE TYR GLU ARG CYS ARG SEQRES 3 C 240 GLU LEU VAL GLU ALA GLY TYR ASP VAL ARG GLN PRO ASP SEQRES 4 C 240 LYS GLU ASN VAL THR LEU LEU HIS TRP ALA ALA ILE ASN SEQRES 5 C 240 ASN ARG ILE ASP LEU VAL LYS TYR TYR ILE SER LYS GLY SEQRES 6 C 240 ALA ILE VAL ASP GLN LEU GLY GLY ASP LEU ASN SER THR SEQRES 7 C 240 PRO LEU HIS TRP ALA THR ARG GLN GLY HIS LEU SER MET SEQRES 8 C 240 VAL VAL GLN LEU MET LYS TYR GLY ALA ASP PRO SER LEU SEQRES 9 C 240 ILE ASP GLY GLU GLY CYS SER CYS ILE HIS LEU ALA ALA SEQRES 10 C 240 GLN PHE GLY HIS THR SER ILE VAL ALA TYR LEU ILE ALA SEQRES 11 C 240 LYS GLY GLN ASP VAL ASP MET MET ASP GLN ASN GLY MET SEQRES 12 C 240 THR PRO LEU MET TRP ALA ALA TYR ARG THR HIS SER VAL SEQRES 13 C 240 ASP PRO THR ARG LEU LEU LEU THR PHE ASN VAL SER VAL SEQRES 14 C 240 ASN LEU GLY ASP LYS TYR HIS LYS ASN THR ALA LEU HIS SEQRES 15 C 240 TRP ALA VAL LEU ALA GLY ASN THR THR VAL ILE SER LEU SEQRES 16 C 240 LEU LEU GLU ALA GLY ALA ASN VAL ASP ALA GLN ASN ILE SEQRES 17 C 240 LYS GLY GLU SER ALA LEU ASP LEU ALA LYS GLN ARG LYS SEQRES 18 C 240 ASN VAL TRP MET ILE ASN HIS LEU GLN GLU ALA ARG GLN SEQRES 19 C 240 ALA LYS GLY TYR ASP ASN HET HIS A 322 10 HET SO4 B 322 5 HET SO4 B 323 5 HET GOL C 449 6 HET GOL C 450 6 HET SO4 C 451 5 HET SO4 C 452 5 HET SO4 A 323 5 HET SO4 A 324 5 HET SO4 A 325 5 HETNAM HIS HISTIDINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 HIS C6 H10 N3 O2 1+ FORMUL 5 SO4 7(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 14 HOH *342(H2 O) HELIX 1 1 ASP A 55 TRP A 59 5 5 HELIX 2 2 ASP A 60 TYR A 67 1 8 HELIX 3 3 ILE A 69 ALA A 79 1 11 HELIX 4 4 THR A 92 ASN A 100 1 9 HELIX 5 5 ARG A 102 LYS A 112 1 11 HELIX 6 6 THR A 126 GLY A 135 1 10 HELIX 7 7 HIS A 136 TYR A 146 1 11 HELIX 8 8 SER A 159 PHE A 167 1 9 HELIX 9 9 HIS A 169 LYS A 179 1 11 HELIX 10 10 THR A 192 THR A 201 1 10 HELIX 11 11 PRO A 206 PHE A 213 1 8 HELIX 12 12 THR A 227 GLY A 236 1 10 HELIX 13 13 ASN A 237 GLY A 248 1 12 HELIX 14 14 SER A 260 ARG A 268 1 9 HELIX 15 15 ASN A 270 ARG A 281 1 12 HELIX 16 16 ASP B 55 TRP B 59 5 5 HELIX 17 17 ASP B 60 TYR B 67 1 8 HELIX 18 18 ILE B 69 ALA B 79 1 11 HELIX 19 19 THR B 92 ASN B 100 1 9 HELIX 20 20 ARG B 102 LYS B 112 1 11 HELIX 21 21 THR B 126 GLY B 135 1 10 HELIX 22 22 HIS B 136 LYS B 145 1 10 HELIX 23 23 SER B 159 PHE B 167 1 9 HELIX 24 24 HIS B 169 GLY B 180 1 12 HELIX 25 25 THR B 192 THR B 201 1 10 HELIX 26 26 PRO B 206 PHE B 213 1 8 HELIX 27 27 THR B 227 ALA B 235 1 9 HELIX 28 28 ASN B 237 ALA B 247 1 11 HELIX 29 29 ALA B 261 LYS B 269 1 9 HELIX 30 30 ASN B 270 GLU B 279 1 10 HELIX 31 31 ASP C 60 TYR C 67 1 8 HELIX 32 32 ILE C 69 ALA C 79 1 11 HELIX 33 33 THR C 92 ASN C 100 1 9 HELIX 34 34 ARG C 102 LYS C 112 1 11 HELIX 35 35 THR C 126 GLY C 135 1 10 HELIX 36 36 HIS C 136 TYR C 146 1 11 HELIX 37 37 SER C 159 PHE C 167 1 9 HELIX 38 38 HIS C 169 LYS C 179 1 11 HELIX 39 39 THR C 192 THR C 201 1 10 HELIX 40 40 PRO C 206 PHE C 213 1 8 HELIX 41 41 THR C 227 ALA C 235 1 9 HELIX 42 42 ASN C 237 ALA C 247 1 11 HELIX 43 43 SER C 260 LYS C 269 1 10 HELIX 44 44 ASN C 270 LYS C 284 1 15 CISPEP 1 ASP A 205 PRO A 206 0 0.25 CISPEP 2 ASP B 205 PRO B 206 0 0.18 CISPEP 3 ASP C 205 PRO C 206 0 0.31 SITE 1 AC1 6 ASN A 189 HIS A 224 HIS C 224 LEU C 234 SITE 2 AC1 6 HOH C 491 HOH C 493 SITE 1 AC2 8 HIS B 202 GLY B 236 ASN B 237 THR B 238 SITE 2 AC2 8 THR B 239 HOH B 376 ARG C 281 HOH C 541 SITE 1 AC3 3 HIS A 276 ARG B 72 LEU B 76 SITE 1 AC4 1 ARG C 133 SITE 1 AC5 5 HOH A 410 VAL C 215 SER C 216 VAL C 217 SITE 2 AC5 5 ASN C 218 SITE 1 AC6 7 SO4 A 325 GLY C 168 THR C 170 SER C 171 SITE 2 AC6 7 HOH C 464 HOH C 494 HOH C 534 SITE 1 AC7 3 ARG C 268 ASN C 270 MET C 273 SITE 1 AC8 5 MET A 50 THR A 51 HOH A 388 TYR B 67 SITE 2 AC8 5 HIS C 276 SITE 1 AC9 4 ARG A 208 ASN C 101 HIS C 136 HOH C 480 SITE 1 BC1 8 HIS A 169 THR A 170 SER A 171 HOH A 414 SITE 2 BC1 8 HOH A 433 HOH A 449 HOH A 450 SO4 C 451 CRYST1 106.660 106.660 255.530 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009376 0.005413 0.000000 0.00000 SCALE2 0.000000 0.010826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003913 0.00000 MASTER 463 0 10 44 0 0 16 6 0 0 0 57 END