HEADER HYDROLASE 06-OCT-08 3ESR TITLE CRYSTAL STRUCTURE OF D,D-HEPTOSE1.7-BISPHOSPHATE PHOSPHATASE FROM E. TITLE 2 COLI IN COMPLEX WITH CALCIUM AND PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D,D-HEPTOSE 1,7-BISPHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-GLYCERO-D-MANNO-HEPTOSE 1,7-BISPHOSPHATE PHOSPHATASE; COMPND 5 EC: 3.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B0200, GMHB, JW0196, YAED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS CARBOHYDRATE METABOLISM, HYDROLASE, LIPOPOLYSACCHARIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.N.SUGIMAN-MARANGOS,M.S.JUNOP REVDAT 3 11-APR-12 3ESR 1 REMARK VERSN REVDAT 2 24-FEB-09 3ESR 1 VERSN REVDAT 1 14-OCT-08 3ESR 0 JRNL AUTH P.TAYLOR,S.N.SUGIMAN-MARANGOS,K.ZHANG,G.DELEON,G.D.WRIGHT, JRNL AUTH 2 M.S.JUNOP JRNL TITL CRYSTAL STRUCTURE OF D,D-HEPTOSE 1.7-BISPHOSPHATE JRNL TITL 2 PHOSPHATASE FROM E. COLI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 10728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 540 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1423 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.250 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1458 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1979 ; 1.791 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ;14.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;38.937 ;24.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 242 ;16.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.706 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 218 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1115 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 667 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 963 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 96 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.215 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 905 ; 1.025 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1457 ; 1.559 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 553 ; 2.812 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 522 ; 4.135 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9920 8.6460 18.2870 REMARK 3 T TENSOR REMARK 3 T11: 0.0085 T22: 0.1350 REMARK 3 T33: 0.1078 T12: 0.0017 REMARK 3 T13: 0.0271 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.3150 L22: 2.6330 REMARK 3 L33: 2.2756 L12: 1.0424 REMARK 3 L13: -0.1159 L23: -0.7937 REMARK 3 S TENSOR REMARK 3 S11: 0.2793 S12: -0.1970 S13: -0.2231 REMARK 3 S21: 0.2004 S22: -0.0548 S23: 0.0190 REMARK 3 S31: 0.1794 S32: -0.1051 S33: -0.2245 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0920 11.4130 15.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.1033 REMARK 3 T33: 0.1575 T12: -0.0300 REMARK 3 T13: 0.0069 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.6435 L22: 0.4117 REMARK 3 L33: 2.0132 L12: 0.2584 REMARK 3 L13: -1.1534 L23: -0.0200 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: 0.1625 S13: -0.1008 REMARK 3 S21: -0.0207 S22: 0.0419 S23: 0.0123 REMARK 3 S31: -0.0362 S32: 0.0702 S33: -0.1080 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7350 16.0160 26.7700 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: -0.0425 REMARK 3 T33: 0.0671 T12: -0.0876 REMARK 3 T13: 0.0597 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 11.3380 L22: 3.8955 REMARK 3 L33: 24.4624 L12: 5.5151 REMARK 3 L13: -9.6138 L23: -9.1240 REMARK 3 S TENSOR REMARK 3 S11: 0.7805 S12: -0.4629 S13: 0.6811 REMARK 3 S21: 0.6700 S22: -0.2005 S23: 0.4638 REMARK 3 S31: -1.2527 S32: 0.2312 S33: -0.5800 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4420 20.5940 14.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.0358 T22: 0.0485 REMARK 3 T33: 0.1377 T12: -0.0631 REMARK 3 T13: 0.0324 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 15.6008 L22: 1.7776 REMARK 3 L33: 4.5223 L12: 1.4855 REMARK 3 L13: 0.0929 L23: 1.7117 REMARK 3 S TENSOR REMARK 3 S11: 0.2434 S12: -0.0848 S13: 0.3249 REMARK 3 S21: 0.0070 S22: -0.0853 S23: -0.0167 REMARK 3 S31: -0.4057 S32: 0.3866 S33: -0.1581 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2980 8.1510 29.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.0844 REMARK 3 T33: 0.1468 T12: 0.0114 REMARK 3 T13: 0.0413 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.9292 L22: 1.2875 REMARK 3 L33: 8.2573 L12: 0.3914 REMARK 3 L13: -1.2445 L23: -3.2561 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.3128 S13: -0.0276 REMARK 3 S21: 0.1964 S22: 0.0844 S23: 0.3739 REMARK 3 S31: -0.3596 S32: -0.0867 S33: -0.1422 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4310 13.8890 15.2280 REMARK 3 T TENSOR REMARK 3 T11: -0.0271 T22: 0.1009 REMARK 3 T33: 0.1747 T12: 0.0069 REMARK 3 T13: 0.0301 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 4.0814 L22: 11.3428 REMARK 3 L33: 4.4142 L12: -1.6364 REMARK 3 L13: 0.2035 L23: -4.5814 REMARK 3 S TENSOR REMARK 3 S11: 0.1238 S12: -0.0043 S13: 0.2762 REMARK 3 S21: 0.1658 S22: 0.0004 S23: 0.7669 REMARK 3 S31: -0.0975 S32: 0.0114 S33: -0.1242 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5280 15.1350 4.1700 REMARK 3 T TENSOR REMARK 3 T11: 0.0151 T22: 0.1608 REMARK 3 T33: 0.1888 T12: -0.0088 REMARK 3 T13: -0.0060 T23: 0.0718 REMARK 3 L TENSOR REMARK 3 L11: 17.3663 L22: 1.3888 REMARK 3 L33: 9.5773 L12: -1.4112 REMARK 3 L13: -3.4411 L23: 3.6463 REMARK 3 S TENSOR REMARK 3 S11: -0.2590 S12: 0.8992 S13: 0.5467 REMARK 3 S21: -0.5761 S22: 0.5421 S23: 0.1066 REMARK 3 S31: -0.3769 S32: -0.4328 S33: -0.2832 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7060 2.8400 12.3970 REMARK 3 T TENSOR REMARK 3 T11: -0.0079 T22: 0.1076 REMARK 3 T33: 0.1555 T12: -0.0095 REMARK 3 T13: 0.0218 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 11.9633 L22: 4.6336 REMARK 3 L33: 0.0710 L12: 0.8885 REMARK 3 L13: 0.5455 L23: 0.4994 REMARK 3 S TENSOR REMARK 3 S11: -0.1242 S12: 0.1537 S13: -0.5551 REMARK 3 S21: 0.0773 S22: 0.1070 S23: 0.1365 REMARK 3 S31: 0.0367 S32: 0.0545 S33: 0.0172 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8310 0.0680 6.6500 REMARK 3 T TENSOR REMARK 3 T11: -0.0042 T22: 0.1257 REMARK 3 T33: 0.1295 T12: -0.0317 REMARK 3 T13: 0.0364 T23: -0.0866 REMARK 3 L TENSOR REMARK 3 L11: 7.5354 L22: 3.1202 REMARK 3 L33: 0.4668 L12: 1.0635 REMARK 3 L13: -0.3828 L23: -0.4668 REMARK 3 S TENSOR REMARK 3 S11: -0.1355 S12: 0.1510 S13: -0.5653 REMARK 3 S21: -0.0191 S22: 0.0978 S23: -0.3332 REMARK 3 S31: 0.1403 S32: -0.1339 S33: 0.0377 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5750 8.1980 -4.3060 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.3010 REMARK 3 T33: -0.0880 T12: -0.0702 REMARK 3 T13: 0.0727 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 78.5396 L22: 16.3768 REMARK 3 L33: 20.1728 L12: -12.2364 REMARK 3 L13: 16.3401 L23: -4.4677 REMARK 3 S TENSOR REMARK 3 S11: -0.8581 S12: 3.1741 S13: -1.4897 REMARK 3 S21: -2.1869 S22: -0.1263 S23: 0.9929 REMARK 3 S31: 0.2288 S32: 2.4269 S33: 0.9844 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4291 9.6279 25.2589 REMARK 3 T TENSOR REMARK 3 T11: -0.0114 T22: 0.0105 REMARK 3 T33: 0.0222 T12: 0.0220 REMARK 3 T13: 0.0016 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2225 3.0980 17.3609 REMARK 3 T TENSOR REMARK 3 T11: -0.0954 T22: 0.0638 REMARK 3 T33: 0.1063 T12: -0.0624 REMARK 3 T13: -0.0155 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3293 5.2864 19.7089 REMARK 3 T TENSOR REMARK 3 T11: 0.0061 T22: 0.2023 REMARK 3 T33: 0.1695 T12: -0.2858 REMARK 3 T13: 0.1703 T23: -0.1842 REMARK 3 L TENSOR REMARK 3 L11: 292.4738 L22: 49.4136 REMARK 3 L33: 0.0294 L12:-120.2172 REMARK 3 L13: -2.9330 L23: 1.2056 REMARK 3 S TENSOR REMARK 3 S11: -4.9385 S12: 8.8793 S13: -6.9695 REMARK 3 S21: 1.5989 S22: 2.7179 S23: -0.1367 REMARK 3 S31: -2.3981 S32: -1.7617 S33: 2.2206 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8488 8.8369 17.0754 REMARK 3 T TENSOR REMARK 3 T11: -0.0555 T22: 0.0275 REMARK 3 T33: 0.0278 T12: 0.0148 REMARK 3 T13: -0.0176 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.4767 L22: 0.5857 REMARK 3 L33: 0.4697 L12: 0.3649 REMARK 3 L13: -0.3110 L23: -0.4756 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0570 S13: -0.0763 REMARK 3 S21: 0.0204 S22: -0.0001 S23: -0.0426 REMARK 3 S31: -0.1000 S32: -0.0272 S33: -0.0279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ESR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-08. REMARK 100 THE RCSB ID CODE IS RCSB049721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : BLUE CONFOCAL OPTICS MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11271 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 39.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 3.790 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.33 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2GMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS, 0.005M DTT, REMARK 280 0.025M SODIUM CHLORIDE, 0.005M CALCIUM CHLORIDE, 0.005M SODIUM REMARK 280 PHOSPHATE, 11% GLYCEROL , PH 7.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.09150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.22300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.09150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.22300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 256 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 206 REMARK 465 GLN A 207 REMARK 465 LYS A 208 REMARK 465 PRO A 209 REMARK 465 ALA A 210 REMARK 465 GLN A 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 153.50 -41.77 REMARK 500 ARG A 32 -79.38 -102.73 REMARK 500 PRO A 180 109.89 -43.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 30 ASP A 31 147.69 REMARK 500 PRO A 180 ILE A 181 -148.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 165 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 213 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD1 REMARK 620 2 ASP A 31 OD2 49.3 REMARK 620 3 ASP A 33 O 96.7 106.7 REMARK 620 4 ASP A 156 OD1 122.0 72.9 95.4 REMARK 620 5 HOH A 304 O 154.9 154.4 83.2 82.9 REMARK 620 6 PO4 A 214 O3 74.0 118.9 99.7 156.6 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 112 SG REMARK 620 2 HIS A 114 ND1 107.3 REMARK 620 3 CYS A 127 SG 106.1 101.3 REMARK 620 4 CYS A 129 SG 126.7 105.9 106.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ESQ RELATED DB: PDB DBREF 3ESR A 21 211 UNP P63228 GMHB_ECOLI 1 191 SEQADV 3ESR MET A 1 UNP P63228 EXPRESSION TAG SEQADV 3ESR GLY A 2 UNP P63228 EXPRESSION TAG SEQADV 3ESR SER A 3 UNP P63228 EXPRESSION TAG SEQADV 3ESR SER A 4 UNP P63228 EXPRESSION TAG SEQADV 3ESR HIS A 5 UNP P63228 EXPRESSION TAG SEQADV 3ESR HIS A 6 UNP P63228 EXPRESSION TAG SEQADV 3ESR HIS A 7 UNP P63228 EXPRESSION TAG SEQADV 3ESR HIS A 8 UNP P63228 EXPRESSION TAG SEQADV 3ESR HIS A 9 UNP P63228 EXPRESSION TAG SEQADV 3ESR HIS A 10 UNP P63228 EXPRESSION TAG SEQADV 3ESR SER A 11 UNP P63228 EXPRESSION TAG SEQADV 3ESR SER A 12 UNP P63228 EXPRESSION TAG SEQADV 3ESR GLY A 13 UNP P63228 EXPRESSION TAG SEQADV 3ESR LEU A 14 UNP P63228 EXPRESSION TAG SEQADV 3ESR VAL A 15 UNP P63228 EXPRESSION TAG SEQADV 3ESR PRO A 16 UNP P63228 EXPRESSION TAG SEQADV 3ESR ARG A 17 UNP P63228 EXPRESSION TAG SEQADV 3ESR GLY A 18 UNP P63228 EXPRESSION TAG SEQADV 3ESR SER A 19 UNP P63228 EXPRESSION TAG SEQADV 3ESR HIS A 20 UNP P63228 EXPRESSION TAG SEQRES 1 A 211 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 211 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL PRO SEQRES 3 A 211 ALA ILE PHE LEU ASP ARG ASP GLY THR ILE ASN VAL ASP SEQRES 4 A 211 HIS GLY TYR VAL HIS GLU ILE ASP ASN PHE GLU PHE ILE SEQRES 5 A 211 ASP GLY VAL ILE ASP ALA MET ARG GLU LEU LYS LYS MET SEQRES 6 A 211 GLY PHE ALA LEU VAL VAL VAL THR ASN GLN SER GLY ILE SEQRES 7 A 211 ALA ARG GLY LYS PHE THR GLU ALA GLN PHE GLU THR LEU SEQRES 8 A 211 THR GLU TRP MET ASP TRP SER LEU ALA ASP ARG ASP VAL SEQRES 9 A 211 ASP LEU ASP GLY ILE TYR TYR CYS PRO HIS HIS PRO GLN SEQRES 10 A 211 GLY SER VAL GLU GLU PHE ARG GLN VAL CYS ASP CYS ARG SEQRES 11 A 211 LYS PRO HIS PRO GLY MET LEU LEU SER ALA ARG ASP TYR SEQRES 12 A 211 LEU HIS ILE ASP MET ALA ALA SER TYR MET VAL GLY ASP SEQRES 13 A 211 LYS LEU GLU ASP MET GLN ALA ALA VAL ALA ALA ASN VAL SEQRES 14 A 211 GLY THR LYS VAL LEU VAL ARG THR GLY LYS PRO ILE THR SEQRES 15 A 211 PRO GLU ALA GLU ASN ALA ALA ASP TRP VAL LEU ASN SER SEQRES 16 A 211 LEU ALA ASP LEU PRO GLN ALA ILE LYS LYS GLN GLN LYS SEQRES 17 A 211 PRO ALA GLN HET ZN A 212 1 HET CA A 213 1 HET PO4 A 214 5 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 CA CA 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *108(H2 O) HELIX 1 1 GLU A 45 PHE A 49 5 5 HELIX 2 2 GLY A 54 MET A 65 1 12 HELIX 3 3 SER A 76 GLY A 81 1 6 HELIX 4 4 THR A 84 ASP A 101 1 18 HELIX 5 5 PRO A 134 HIS A 145 1 12 HELIX 6 6 LYS A 157 ALA A 167 1 11 HELIX 7 7 THR A 182 ALA A 189 1 8 HELIX 8 8 SER A 195 ALA A 197 5 3 HELIX 9 9 ASP A 198 LYS A 205 1 8 SHEET 1 A 6 GLY A 108 CYS A 112 0 SHEET 2 A 6 ALA A 68 ASN A 74 1 N THR A 73 O CYS A 112 SHEET 3 A 6 ALA A 27 LEU A 30 1 N LEU A 30 O VAL A 70 SHEET 4 A 6 TYR A 152 GLY A 155 1 O TYR A 152 N PHE A 29 SHEET 5 A 6 THR A 171 VAL A 175 1 O VAL A 173 N MET A 153 SHEET 6 A 6 TRP A 191 LEU A 193 1 O LEU A 193 N LEU A 174 LINK OD1 ASP A 31 CA CA A 213 1555 1555 2.86 LINK OD2 ASP A 31 CA CA A 213 1555 1555 2.22 LINK O ASP A 33 CA CA A 213 1555 1555 2.32 LINK SG CYS A 112 ZN ZN A 212 1555 1555 2.24 LINK ND1 HIS A 114 ZN ZN A 212 1555 1555 2.30 LINK SG CYS A 127 ZN ZN A 212 1555 1555 2.45 LINK SG CYS A 129 ZN ZN A 212 1555 1555 2.34 LINK OD1 ASP A 156 CA CA A 213 1555 1555 2.54 LINK CA CA A 213 O HOH A 304 1555 1555 2.75 LINK CA CA A 213 O3 PO4 A 214 1555 1555 2.12 CISPEP 1 LYS A 131 PRO A 132 0 15.30 SITE 1 AC1 4 CYS A 112 HIS A 114 CYS A 127 CYS A 129 SITE 1 AC2 5 ASP A 31 ASP A 33 ASP A 156 PO4 A 214 SITE 2 AC2 5 HOH A 304 SITE 1 AC3 9 ASP A 31 ARG A 32 ASP A 33 THR A 73 SITE 2 AC3 9 ASN A 74 LYS A 131 CA A 213 HOH A 243 SITE 3 AC3 9 HOH A 316 CRYST1 64.183 50.446 52.018 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019224 0.00000 MASTER 619 0 3 9 6 0 6 6 0 0 0 17 END