HEADER LYASE, TRANSFERASE 25-SEP-08 3ENJ TITLE STRUCTURE OF PIG HEART CITRATE SYNTHASE AT 1.78 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.3.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG,SWINE,WILD BOAR; SOURCE 4 ORGANISM_TAXID: 9823 KEYWDS DISULFIDE EXCHANGE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, CENTER FOR HIGH-THROUGHPUT STRUCTURAL BIOLOGY, CHTSB, KEYWDS 3 METHYLATION, MITOCHONDRION, TRANSFERASE, TRANSIT PEPTIDE, KEYWDS 4 TRICARBOXYLIC ACID CYCLE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.B.LARSON,J.S.DAY,C.NGUYEN,R.CUDNEY,A.MCPHERSON,CENTER FOR HIGH- AUTHOR 2 THROUGHPUT STRUCTURAL BIOLOGY (CHTSB) REVDAT 4 24-JUL-19 3ENJ 1 REMARK REVDAT 3 25-OCT-17 3ENJ 1 REMARK REVDAT 2 21-JUL-09 3ENJ 1 JRNL REVDAT 1 03-FEB-09 3ENJ 0 JRNL AUTH S.B.LARSON,J.S.DAY,C.NGUYEN,R.CUDNEY,A.MCPHERSON JRNL TITL STRUCTURE OF PIG HEART CITRATE SYNTHASE AT 1.78 A JRNL TITL 2 RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 430 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 19407370 JRNL DOI 10.1107/S1744309109008343 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.B.LARSON,J.S.DAY,C.NGUYEN,R.CUDNEY,A.MCPHERSON REMARK 1 TITL PROGRESS IN THE DEVELOPMENT OF AN ALTERNATIVE APPROACH TO REMARK 1 TITL 2 MACROMOLECULAR CRYSTALLIZATION REMARK 1 REF CRYST.GROWTH DES. V. 8 3038 2008 REMARK 1 REFN ISSN 1528-7483 REMARK 1 DOI 10.1021/CG800174N REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 49141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2627 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3128 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.21000 REMARK 3 B22 (A**2) : 2.21000 REMARK 3 B33 (A**2) : -4.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3639 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3565 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4957 ; 1.495 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8116 ; 0.781 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 6.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;39.567 ;23.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 634 ;17.653 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4058 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 850 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 803 ; 0.032 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3518 ; 0.080 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1767 ; 0.006 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 2038 ; 0.000 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 325 ; 0.136 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 176 ; 0.069 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.169 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 115 ; 0.290 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.209 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 14 ; 0.153 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2224 ; 2.916 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 906 ; 0.458 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3598 ; 4.619 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1415 ; 5.357 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1349 ; 7.705 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 54 REMARK 3 RESIDUE RANGE : A 411 A 437 REMARK 3 ORIGIN FOR THE GROUP (A): 52.5930 34.9520 52.9810 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: -0.0242 REMARK 3 T33: 0.0696 T12: 0.2919 REMARK 3 T13: 0.1075 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 0.6673 L22: 0.6674 REMARK 3 L33: 2.6019 L12: -0.0139 REMARK 3 L13: -0.8265 L23: -0.9289 REMARK 3 S TENSOR REMARK 3 S11: 0.1320 S12: -0.0320 S13: 0.3366 REMARK 3 S21: 0.2363 S22: 0.1224 S23: 0.1117 REMARK 3 S31: -1.0439 S32: -0.4966 S33: -0.2545 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 410 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 68.9780 25.0410 35.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: -0.0809 REMARK 3 T33: 0.0246 T12: 0.0298 REMARK 3 T13: 0.0293 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.1967 L22: 0.6852 REMARK 3 L33: 3.2148 L12: 0.0298 REMARK 3 L13: -0.0554 L23: -0.4580 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: 0.0888 S13: 0.0333 REMARK 3 S21: -0.0219 S22: 0.0099 S23: -0.0614 REMARK 3 S31: -0.5670 S32: 0.0558 S33: -0.1194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS FOR ALL NON-WATER MOLECULES REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITION AND ADJUSTED TO AVOID REMARK 3 STERIC PROBLEMS. OCCUPANCIES FOR HYDROGENS WERE SET TO THE REMARK 3 OCCUPANCY OF THE ATOM TO WHICH THE HYDROGEN WAS ATTACHED. THE REMARK 3 CYSTEAMINE (CYS A 500) COVALENTLY ATTACHED BY A DISULFIDE BOND REMARK 3 TO CYSTEINE 184 WAS MODELED AS A CYSTEINE WITH ATOMS C AND O REMARK 3 MISSING (SEE REMARK 610). COMMENT ON REMARK 500 BAD TORSION REMARK 3 ANGLES. SIDE CHAIN DENSITY IS WEAK AND SIDE CHAIN MAY BE REMARK 3 DISORDERED FOR ASP A 295. DENSITY FOR THE LOOP CONTAINING LYS A REMARK 3 366 IS NOT HIGHLY RESOLVED. ARG A 421 IS DISORDERED. ALL OTHERS REMARK 3 IN THIS LIST ARE IN WELL-DEFINED DENSITY. REMARK 4 REMARK 4 3ENJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97839 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 41.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 6.350 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.07 REMARK 200 R MERGE FOR SHELL (I) : 0.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT PLACEMENT IN SAME REMARK 200 UNIT CELL REMARK 200 SOFTWARE USED: NONE REMARK 200 STARTING MODEL: PDB ENTRY 1CTS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350 IN H2O IN THE PRESENCE OF REMARK 280 CYSTAMINE HCL, ASPARTAME, BENZAMIDINE HCL AND TRIS-HCL BUFFER, REMARK 280 PH 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.07500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.17000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.53750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.17000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.61250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.17000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.17000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.53750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.17000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.17000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 148.61250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.07500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD AXIS: 1-Y, -X, 1/2-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 76.34000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 76.34000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 99.07500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 20 OD2 ASP A 428 8665 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 177 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 238 68.21 -159.53 REMARK 500 GLU A 239 -174.44 61.71 REMARK 500 ASP A 295 63.93 -118.38 REMARK 500 LEU A 341 42.57 -154.04 REMARK 500 LYS A 366 -96.41 -12.98 REMARK 500 PRO A 370 42.68 -82.13 REMARK 500 ARG A 421 60.99 -155.11 REMARK 500 PRO A 422 169.68 -49.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CYS A 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CTS RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2CTS RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH CITRATE AND COENZYME A REMARK 900 RELATED ID: 4CTS RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH OXALOACETATE ION DBREF 3ENJ A 1 437 UNP P00889 CISY_PIG 28 464 SEQRES 1 A 437 ALA SER SER THR ASN LEU LYS ASP ILE LEU ALA ASP LEU SEQRES 2 A 437 ILE PRO LYS GLU GLN ALA ARG ILE LYS THR PHE ARG GLN SEQRES 3 A 437 GLN HIS GLY ASN THR VAL VAL GLY GLN ILE THR VAL ASP SEQRES 4 A 437 MET MET TYR GLY GLY MET ARG GLY MET LYS GLY LEU VAL SEQRES 5 A 437 TYR GLU THR SER VAL LEU ASP PRO ASP GLU GLY ILE ARG SEQRES 6 A 437 PHE ARG GLY TYR SER ILE PRO GLU CYS GLN LYS MET LEU SEQRES 7 A 437 PRO LYS ALA LYS GLY GLY GLU GLU PRO LEU PRO GLU GLY SEQRES 8 A 437 LEU PHE TRP LEU LEU VAL THR GLY GLN ILE PRO THR GLU SEQRES 9 A 437 GLU GLN VAL SER TRP LEU SER LYS GLU TRP ALA LYS ARG SEQRES 10 A 437 ALA ALA LEU PRO SER HIS VAL VAL THR MET LEU ASP ASN SEQRES 11 A 437 PHE PRO THR ASN LEU HIS PRO MET SER GLN LEU SER ALA SEQRES 12 A 437 ALA ILE THR ALA LEU ASN SER GLU SER ASN PHE ALA ARG SEQRES 13 A 437 ALA TYR ALA GLU GLY ILE HIS ARG THR LYS TYR TRP GLU SEQRES 14 A 437 LEU ILE TYR GLU ASP CYS MET ASP LEU ILE ALA LYS LEU SEQRES 15 A 437 PRO CYS VAL ALA ALA LYS ILE TYR ARG ASN LEU TYR ARG SEQRES 16 A 437 GLU GLY SER SER ILE GLY ALA ILE ASP SER LYS LEU ASP SEQRES 17 A 437 TRP SER HIS ASN PHE THR ASN MET LEU GLY TYR THR ASP SEQRES 18 A 437 ALA GLN PHE THR GLU LEU MET ARG LEU TYR LEU THR ILE SEQRES 19 A 437 HIS SER ASP HIS GLU GLY GLY ASN VAL SER ALA HIS THR SEQRES 20 A 437 SER HIS LEU VAL GLY SER ALA LEU SER ASP PRO TYR LEU SEQRES 21 A 437 SER PHE ALA ALA ALA MET ASN GLY LEU ALA GLY PRO LEU SEQRES 22 A 437 HIS GLY LEU ALA ASN GLN GLU VAL LEU VAL TRP LEU THR SEQRES 23 A 437 GLN LEU GLN LYS GLU VAL GLY LYS ASP VAL SER ASP GLU SEQRES 24 A 437 LYS LEU ARG ASP TYR ILE TRP ASN THR LEU ASN SER GLY SEQRES 25 A 437 ARG VAL VAL PRO GLY TYR GLY HIS ALA VAL LEU ARG LYS SEQRES 26 A 437 THR ASP PRO ARG TYR THR CYS GLN ARG GLU PHE ALA LEU SEQRES 27 A 437 LYS HIS LEU PRO HIS ASP PRO MET PHE LYS LEU VAL ALA SEQRES 28 A 437 GLN LEU TYR LYS ILE VAL PRO ASN VAL LEU LEU GLU GLN SEQRES 29 A 437 GLY LYS ALA LYS ASN PRO TRP PRO ASN VAL ASP ALA HIS SEQRES 30 A 437 SER GLY VAL LEU LEU GLN TYR TYR GLY MET THR GLU MET SEQRES 31 A 437 ASN TYR TYR THR VAL LEU PHE GLY VAL SER ARG ALA LEU SEQRES 32 A 437 GLY VAL LEU ALA GLN LEU ILE TRP SER ARG ALA LEU GLY SEQRES 33 A 437 PHE PRO LEU GLU ARG PRO LYS SER MET SER THR ASP GLY SEQRES 34 A 437 LEU ILE LYS LEU VAL ASP SER LYS HET CYS A 500 9 HET CL A 600 1 HET SO4 A 700 5 HETNAM CYS CYSTEINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 2 CYS C3 H7 N O2 S FORMUL 3 CL CL 1- FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *299(H2 O) HELIX 1 1 ASN A 5 GLY A 29 1 25 HELIX 2 2 THR A 37 GLY A 43 1 7 HELIX 3 3 SER A 70 LEU A 78 1 9 HELIX 4 4 LEU A 88 GLY A 99 1 12 HELIX 5 5 THR A 103 ARG A 117 1 15 HELIX 6 6 PRO A 121 PHE A 131 1 11 HELIX 7 7 HIS A 136 LEU A 148 1 13 HELIX 8 8 ASN A 149 GLU A 151 5 3 HELIX 9 9 SER A 152 GLU A 160 1 9 HELIX 10 10 HIS A 163 THR A 165 5 3 HELIX 11 11 LYS A 166 ARG A 195 1 30 HELIX 12 12 ASP A 208 GLY A 218 1 11 HELIX 13 13 ASP A 221 HIS A 235 1 15 HELIX 14 14 ASN A 242 ALA A 254 1 13 HELIX 15 15 ASP A 257 ALA A 270 1 14 HELIX 16 16 LEU A 276 GLY A 293 1 18 HELIX 17 17 SER A 297 ASN A 310 1 14 HELIX 18 18 ASP A 327 LEU A 341 1 15 HELIX 19 19 ASP A 344 GLN A 364 1 21 HELIX 20 20 VAL A 374 ALA A 376 5 3 HELIX 21 21 HIS A 377 TYR A 385 1 9 HELIX 22 22 GLU A 389 ASN A 391 5 3 HELIX 23 23 TYR A 392 LEU A 415 1 24 HELIX 24 24 SER A 426 LYS A 437 1 12 SHEET 1 A 2 SER A 56 ASP A 59 0 SHEET 2 A 2 GLY A 63 PHE A 66 -1 O GLY A 63 N ASP A 59 SHEET 1 B 2 TYR A 318 HIS A 320 0 SHEET 2 B 2 ASN A 369 PRO A 372 -1 O TRP A 371 N GLY A 319 SSBOND 1 CYS A 184 CYS A 500 1555 1555 2.05 SITE 1 AC1 2 ARG A 401 HOH A 906 SITE 1 AC2 8 ARG A 25 GLY A 43 ARG A 46 PRO A 418 SITE 2 AC2 8 HOH A 847 HOH A 970 HOH A 971 HOH A 983 CRYST1 76.340 76.340 198.150 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013099 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013099 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005047 0.00000 MASTER 404 0 3 24 4 0 3 6 0 0 0 34 END