HEADER SPLICING 23-SEP-08 3ELV TITLE CRYSTAL STRUCTURE OF FULL-LENGTH YEAST PML1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA LEAKAGE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PML1, YLR016C, L1591; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDFDUET-1 KEYWDS INTRINSICALLY UNSTRUCTURED DOMAIN, FORKHEAD-ASSOCIATED DOMAIN (FHA) KEYWDS 2 DOMAIN, PRE-MRNA RETENTION AND SPLICING, PROTEIN PHOSPHORYLATION, KEYWDS 3 RES COMPLEX, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR S.TROWITZSCH,G.WEBER,R.L HRMANN,M.C.WAHL REVDAT 2 13-JUL-11 3ELV 1 VERSN REVDAT 1 10-FEB-09 3ELV 0 JRNL AUTH S.TROWITZSCH,G.WEBER,R.LUHRMANN,M.C.WAHL JRNL TITL CRYSTAL STRUCTURE OF THE PML1P SUBUNIT OF THE YEAST JRNL TITL 2 PRECURSOR MRNA RETENTION AND SPLICING COMPLEX. JRNL REF J.MOL.BIOL. V. 385 531 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19010333 JRNL DOI 10.1016/J.JMB.2008.10.087 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 852 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1102 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 71.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.67000 REMARK 3 B22 (A**2) : -1.67000 REMARK 3 B33 (A**2) : 2.51000 REMARK 3 B12 (A**2) : -0.84000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.331 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2406 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3253 ; 1.227 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 6.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;38.161 ;24.320 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;18.268 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1837 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 880 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1553 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.140 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1504 ; 0.530 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2353 ; 0.923 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1028 ; 1.039 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 900 ; 1.697 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 112 REMARK 3 RESIDUE RANGE : A 122 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5950 11.6750 23.1560 REMARK 3 T TENSOR REMARK 3 T11: -0.1865 T22: -0.3159 REMARK 3 T33: -0.1565 T12: 0.1647 REMARK 3 T13: -0.1436 T23: -0.1675 REMARK 3 L TENSOR REMARK 3 L11: 4.0957 L22: 4.3051 REMARK 3 L33: 3.1962 L12: 0.5960 REMARK 3 L13: -1.1852 L23: -0.3826 REMARK 3 S TENSOR REMARK 3 S11: -0.3637 S12: -0.1651 S13: 0.1147 REMARK 3 S21: 0.0405 S22: -0.0489 S23: 0.2254 REMARK 3 S31: -0.2384 S32: -0.4567 S33: 0.4126 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 111 REMARK 3 RESIDUE RANGE : B 122 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0030 0.5710 -0.9010 REMARK 3 T TENSOR REMARK 3 T11: -0.2186 T22: -0.3193 REMARK 3 T33: -0.2047 T12: -0.1488 REMARK 3 T13: 0.0824 T23: 0.0726 REMARK 3 L TENSOR REMARK 3 L11: 3.8997 L22: 4.5219 REMARK 3 L33: 3.4835 L12: -0.1862 REMARK 3 L13: -0.9220 L23: 1.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.3767 S12: 0.4351 S13: -0.1028 REMARK 3 S21: -0.2553 S22: 0.0705 S23: -0.2534 REMARK 3 S31: 0.0656 S32: -0.0140 S33: 0.3062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ELV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB049485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9802 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.81000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, PH 7.5, 200 MM REMARK 280 LI2SO4, 21-24 % PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.46467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.23233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.23233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.46467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 216 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 HIS A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 8 REMARK 465 TYR A 9 REMARK 465 ASN A 10 REMARK 465 THR A 11 REMARK 465 ARG A 12 REMARK 465 ASN A 13 REMARK 465 TYR A 14 REMARK 465 GLY A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 LYS A 19 REMARK 465 LYS A 20 REMARK 465 PHE A 21 REMARK 465 LYS A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 TYR A 25 REMARK 465 ILE A 26 REMARK 465 ASP A 27 REMARK 465 ILE A 28 REMARK 465 MET A 29 REMARK 465 PRO A 30 REMARK 465 ASP A 31 REMARK 465 PHE A 32 REMARK 465 SER A 33 REMARK 465 PRO A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 465 LEU A 37 REMARK 465 LEU A 38 REMARK 465 GLU A 39 REMARK 465 LEU A 40 REMARK 465 GLU A 41 REMARK 465 SER A 42 REMARK 465 ASN A 43 REMARK 465 ASN A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 GLY A 47 REMARK 465 ILE A 48 REMARK 465 ALA A 49 REMARK 465 LEU A 50 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 ASP A 115 REMARK 465 THR A 116 REMARK 465 ASP A 117 REMARK 465 LEU A 118 REMARK 465 ASP A 119 REMARK 465 ASP A 120 REMARK 465 ARG A 121 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 HIS B 3 REMARK 465 ARG B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 ARG B 7 REMARK 465 PRO B 8 REMARK 465 TYR B 9 REMARK 465 ASN B 10 REMARK 465 THR B 11 REMARK 465 ARG B 12 REMARK 465 ASN B 13 REMARK 465 TYR B 14 REMARK 465 GLY B 15 REMARK 465 HIS B 16 REMARK 465 ASP B 17 REMARK 465 ASP B 18 REMARK 465 LYS B 19 REMARK 465 LYS B 20 REMARK 465 PHE B 21 REMARK 465 LYS B 22 REMARK 465 SER B 23 REMARK 465 GLN B 24 REMARK 465 TYR B 25 REMARK 465 ILE B 26 REMARK 465 ASP B 27 REMARK 465 ILE B 28 REMARK 465 MET B 29 REMARK 465 PRO B 30 REMARK 465 ASP B 31 REMARK 465 PHE B 32 REMARK 465 SER B 33 REMARK 465 PRO B 34 REMARK 465 SER B 35 REMARK 465 GLY B 36 REMARK 465 LEU B 37 REMARK 465 LEU B 38 REMARK 465 GLU B 39 REMARK 465 LEU B 40 REMARK 465 GLU B 41 REMARK 465 SER B 42 REMARK 465 ASN B 43 REMARK 465 ASN B 44 REMARK 465 LYS B 45 REMARK 465 GLU B 46 REMARK 465 GLY B 47 REMARK 465 ILE B 48 REMARK 465 ALA B 49 REMARK 465 LEU B 50 REMARK 465 HIS B 112 REMARK 465 SER B 113 REMARK 465 LEU B 114 REMARK 465 ASP B 115 REMARK 465 THR B 116 REMARK 465 ASP B 117 REMARK 465 LEU B 118 REMARK 465 ASP B 119 REMARK 465 ASP B 120 REMARK 465 ARG B 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 31.38 -83.74 REMARK 500 LEU A 159 45.98 -91.51 REMARK 500 LYS B 88 140.75 -33.78 REMARK 500 ASP B 89 59.66 -61.80 REMARK 500 LEU B 159 50.19 -96.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 237 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A 238 DISTANCE = 6.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ELS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PML1P RESIDUES 51-204 DBREF 3ELV A 1 204 UNP Q07930 PML1_YEAST 1 204 DBREF 3ELV B 1 204 UNP Q07930 PML1_YEAST 1 204 SEQADV 3ELV GLY A 0 UNP Q07930 EXPRESSION TAG SEQADV 3ELV GLY B 0 UNP Q07930 EXPRESSION TAG SEQRES 1 A 205 GLY MET PHE HIS ARG ARG LYS ARG PRO TYR ASN THR ARG SEQRES 2 A 205 ASN TYR GLY HIS ASP ASP LYS LYS PHE LYS SER GLN TYR SEQRES 3 A 205 ILE ASP ILE MET PRO ASP PHE SER PRO SER GLY LEU LEU SEQRES 4 A 205 GLU LEU GLU SER ASN ASN LYS GLU GLY ILE ALA LEU LYS SEQRES 5 A 205 HIS VAL GLU PRO GLN ASP ALA ILE SER PRO ASP ASN TYR SEQRES 6 A 205 MET ASP MET LEU GLY LEU GLU ALA ARG ASP ARG THR MET SEQRES 7 A 205 TYR GLU LEU VAL ILE TYR ARG LYS ASN ASP LYS ASP LYS SEQRES 8 A 205 GLY PRO TRP LYS ARG TYR ASP LEU ASN GLY ARG SER CYS SEQRES 9 A 205 TYR LEU VAL GLY ARG GLU LEU GLY HIS SER LEU ASP THR SEQRES 10 A 205 ASP LEU ASP ASP ARG THR GLU ILE VAL VAL ALA ASP ILE SEQRES 11 A 205 GLY ILE PRO GLU GLU THR SER SER LYS GLN HIS CYS VAL SEQRES 12 A 205 ILE GLN PHE ARG ASN VAL ARG GLY ILE LEU LYS CYS TYR SEQRES 13 A 205 VAL MET ASP LEU ASP SER SER ASN GLY THR CYS LEU ASN SEQRES 14 A 205 ASN VAL VAL ILE PRO GLY ALA ARG TYR ILE GLU LEU ARG SEQRES 15 A 205 SER GLY ASP VAL LEU THR LEU SER GLU PHE GLU GLU ASP SEQRES 16 A 205 ASN ASP TYR GLU LEU ILE PHE MET ASN VAL SEQRES 1 B 205 GLY MET PHE HIS ARG ARG LYS ARG PRO TYR ASN THR ARG SEQRES 2 B 205 ASN TYR GLY HIS ASP ASP LYS LYS PHE LYS SER GLN TYR SEQRES 3 B 205 ILE ASP ILE MET PRO ASP PHE SER PRO SER GLY LEU LEU SEQRES 4 B 205 GLU LEU GLU SER ASN ASN LYS GLU GLY ILE ALA LEU LYS SEQRES 5 B 205 HIS VAL GLU PRO GLN ASP ALA ILE SER PRO ASP ASN TYR SEQRES 6 B 205 MET ASP MET LEU GLY LEU GLU ALA ARG ASP ARG THR MET SEQRES 7 B 205 TYR GLU LEU VAL ILE TYR ARG LYS ASN ASP LYS ASP LYS SEQRES 8 B 205 GLY PRO TRP LYS ARG TYR ASP LEU ASN GLY ARG SER CYS SEQRES 9 B 205 TYR LEU VAL GLY ARG GLU LEU GLY HIS SER LEU ASP THR SEQRES 10 B 205 ASP LEU ASP ASP ARG THR GLU ILE VAL VAL ALA ASP ILE SEQRES 11 B 205 GLY ILE PRO GLU GLU THR SER SER LYS GLN HIS CYS VAL SEQRES 12 B 205 ILE GLN PHE ARG ASN VAL ARG GLY ILE LEU LYS CYS TYR SEQRES 13 B 205 VAL MET ASP LEU ASP SER SER ASN GLY THR CYS LEU ASN SEQRES 14 B 205 ASN VAL VAL ILE PRO GLY ALA ARG TYR ILE GLU LEU ARG SEQRES 15 B 205 SER GLY ASP VAL LEU THR LEU SER GLU PHE GLU GLU ASP SEQRES 16 B 205 ASN ASP TYR GLU LEU ILE PHE MET ASN VAL HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 B 205 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *60(H2 O) HELIX 1 1 SER A 60 LEU A 68 1 9 HELIX 2 2 GLU A 71 ARG A 75 5 5 HELIX 3 3 ASN A 86 LYS A 88 5 3 HELIX 4 4 PHE A 191 ASN A 195 5 5 HELIX 5 5 SER B 60 LEU B 68 1 9 HELIX 6 6 GLU B 71 ARG B 75 5 5 HELIX 7 7 PHE B 191 ASN B 195 5 5 SHEET 1 A 6 LYS A 94 ASP A 97 0 SHEET 2 A 6 TYR A 78 ARG A 84 -1 N ILE A 82 O LYS A 94 SHEET 3 A 6 TYR A 197 ASN A 203 -1 O ILE A 200 N VAL A 81 SHEET 4 A 6 VAL A 185 THR A 187 -1 N LEU A 186 O LEU A 199 SHEET 5 A 6 CYS A 166 LEU A 167 -1 N CYS A 166 O THR A 187 SHEET 6 A 6 VAL A 170 VAL A 171 -1 O VAL A 170 N LEU A 167 SHEET 1 B 5 ILE A 129 ILE A 131 0 SHEET 2 B 5 CYS A 103 ARG A 108 1 N LEU A 105 O ILE A 129 SHEET 3 B 5 CYS A 141 VAL A 148 -1 O CYS A 141 N VAL A 106 SHEET 4 B 5 ILE A 151 ASP A 158 -1 O TYR A 155 N GLN A 144 SHEET 5 B 5 ILE A 178 GLU A 179 -1 O ILE A 178 N VAL A 156 SHEET 1 C 6 LYS B 94 ASP B 97 0 SHEET 2 C 6 TYR B 78 ARG B 84 -1 N ILE B 82 O LYS B 94 SHEET 3 C 6 TYR B 197 ASN B 203 -1 O ILE B 200 N VAL B 81 SHEET 4 C 6 VAL B 185 THR B 187 -1 N LEU B 186 O LEU B 199 SHEET 5 C 6 CYS B 166 LEU B 167 -1 N CYS B 166 O THR B 187 SHEET 6 C 6 VAL B 170 VAL B 171 -1 O VAL B 170 N LEU B 167 SHEET 1 D 5 ILE B 129 ILE B 131 0 SHEET 2 D 5 CYS B 103 ARG B 108 1 N LEU B 105 O ILE B 129 SHEET 3 D 5 CYS B 141 ASN B 147 -1 O CYS B 141 N VAL B 106 SHEET 4 D 5 LEU B 152 ASP B 158 -1 O MET B 157 N VAL B 142 SHEET 5 D 5 ILE B 178 GLU B 179 -1 O ILE B 178 N VAL B 156 SITE 1 AC1 3 ARG A 108 SER A 137 LYS A 138 SITE 1 AC2 2 GLU A 179 ARG A 181 SITE 1 AC3 3 ARG B 108 SER B 137 LYS B 138 CRYST1 86.891 86.891 96.697 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011509 0.006645 0.000000 0.00000 SCALE2 0.000000 0.013289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010342 0.00000 MASTER 476 0 3 7 22 0 3 6 0 0 0 32 END