HEADER HYDROLASE 19-SEP-08 3EKP TITLE CRYSTAL STRUCTURE OF THE INHIBITOR AMPRENAVIR (APV) IN COMPLEX WITH A TITLE 2 MULTI-DRUG RESISTANT HIV-1 PROTEASE VARIANT TITLE 3 (L10I/G48V/I54V/V64I/V82A)REFER: FLAP+ IN CITATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 491-589; COMPND 5 SYNONYM: RETROPEPSIN, PR; COMPND 6 EC: 3.4.23.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIV-1 M:B_ARV2/SF2; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11685; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TAP106; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC35 KEYWDS HIV-1, PROTEASE, MULTI-DRUG RESISTANCE, AMPRENAVIR, AIDS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PRABU-JAYABALAN,N.M.KING,R.M.BANDARANAYAKE REVDAT 7 20-OCT-21 3EKP 1 REMARK SEQADV REVDAT 6 25-OCT-17 3EKP 1 REMARK REVDAT 5 17-OCT-12 3EKP 1 JRNL REVDAT 4 25-JUL-12 3EKP 1 JRNL REVDAT 3 13-JUL-11 3EKP 1 VERSN REVDAT 2 21-JUL-10 3EKP 1 HETSYN REVDAT 1 01-SEP-09 3EKP 0 JRNL AUTH N.M.KING,M.PRABU-JEYABALAN,R.M.BANDARANAYAKE,M.N.NALAM, JRNL AUTH 2 E.A.NALIVAIKA,A.OZEN,N.K.YILMAZ,C.A.SCHIFFER JRNL TITL EXTREME ENTROPY-ENTHALPY COMPENSATION IN A DRUG-RESISTANT JRNL TITL 2 VARIANT OF HIV-1 PROTEASE. JRNL REF ACS CHEM.BIOL. V. 7 1536 2012 JRNL REFN ISSN 1554-8929 JRNL PMID 22712830 JRNL DOI 10.1021/CB300191K REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27472 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1384 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3214 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3109 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4388 ; 1.331 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7191 ; 0.662 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 7.270 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;38.740 ;24.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;15.200 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.437 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3542 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 584 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 517 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3279 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1472 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2129 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 106 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2631 ; 1.208 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 846 ; 0.245 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3300 ; 1.420 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1299 ; 2.288 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1088 ; 3.324 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 26 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 RESIDUE RANGE : A 94 A 99 REMARK 3 RESIDUE RANGE : B 1 B 5 REMARK 3 RESIDUE RANGE : B 94 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9981 -36.3609 35.3864 REMARK 3 T TENSOR REMARK 3 T11: -0.0718 T22: -0.0507 REMARK 3 T33: -0.0498 T12: 0.0004 REMARK 3 T13: 0.0041 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 3.6263 L22: 3.0923 REMARK 3 L33: 6.6134 L12: 0.4274 REMARK 3 L13: 3.2187 L23: 1.8021 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.0570 S13: -0.2499 REMARK 3 S21: 0.0033 S22: 0.0554 S23: -0.0922 REMARK 3 S31: 0.1531 S32: 0.1265 S33: -0.1019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7008 -26.9619 30.8242 REMARK 3 T TENSOR REMARK 3 T11: -0.0777 T22: 0.0997 REMARK 3 T33: 0.0144 T12: -0.0220 REMARK 3 T13: 0.0145 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 8.2493 L22: 13.4739 REMARK 3 L33: 2.7623 L12: 5.6706 REMARK 3 L13: -4.6278 L23: -1.9195 REMARK 3 S TENSOR REMARK 3 S11: -0.1791 S12: 0.5362 S13: -0.1685 REMARK 3 S21: 0.2814 S22: 0.2099 S23: -0.1051 REMARK 3 S31: 0.0467 S32: -0.6468 S33: -0.0308 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9998 -24.4325 39.9866 REMARK 3 T TENSOR REMARK 3 T11: 0.0242 T22: -0.0389 REMARK 3 T33: -0.0190 T12: -0.1015 REMARK 3 T13: 0.0038 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 14.5326 L22: 3.9803 REMARK 3 L33: 2.9185 L12: 0.5525 REMARK 3 L13: -4.0495 L23: -2.8162 REMARK 3 S TENSOR REMARK 3 S11: 0.2817 S12: 0.2146 S13: 0.3382 REMARK 3 S21: 0.3550 S22: -0.0086 S23: 0.5013 REMARK 3 S31: -0.3135 S32: 0.7033 S33: -0.2731 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2153 -16.5970 30.3244 REMARK 3 T TENSOR REMARK 3 T11: -0.1026 T22: -0.0566 REMARK 3 T33: -0.0554 T12: 0.0573 REMARK 3 T13: -0.0277 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 6.7380 L22: 0.7444 REMARK 3 L33: 53.0380 L12: 1.6615 REMARK 3 L13: 7.8878 L23: -1.8840 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: -0.3115 S13: 0.1709 REMARK 3 S21: 0.5469 S22: 0.1674 S23: -0.1063 REMARK 3 S31: 0.1452 S32: -1.3558 S33: -0.1023 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 55 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0161 -13.0300 40.9781 REMARK 3 T TENSOR REMARK 3 T11: -0.0332 T22: -0.1179 REMARK 3 T33: -0.0215 T12: 0.0079 REMARK 3 T13: -0.0134 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 3.8830 L22: 2.3444 REMARK 3 L33: 35.8538 L12: 2.7079 REMARK 3 L13: 5.1270 L23: -0.0664 REMARK 3 S TENSOR REMARK 3 S11: 0.1495 S12: 0.3480 S13: 0.0626 REMARK 3 S21: -0.3626 S22: -0.0815 S23: 0.1928 REMARK 3 S31: -0.6251 S32: 0.8106 S33: -0.0680 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0083 -26.4171 16.5254 REMARK 3 T TENSOR REMARK 3 T11: -0.1088 T22: -0.0392 REMARK 3 T33: -0.0980 T12: -0.0916 REMARK 3 T13: -0.0081 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 15.6093 L22: 7.0054 REMARK 3 L33: 15.9192 L12: -8.8308 REMARK 3 L13: 8.1112 L23: -9.4384 REMARK 3 S TENSOR REMARK 3 S11: 0.2266 S12: 0.6364 S13: -0.4388 REMARK 3 S21: 0.0348 S22: -0.0323 S23: 0.1811 REMARK 3 S31: 0.0713 S32: -0.3976 S33: -0.1943 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3410 -29.6561 54.2918 REMARK 3 T TENSOR REMARK 3 T11: -0.1693 T22: -0.0135 REMARK 3 T33: -0.0961 T12: -0.0633 REMARK 3 T13: 0.0050 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.9070 L22: 17.2771 REMARK 3 L33: 13.0491 L12: -5.1776 REMARK 3 L13: -5.0762 L23: 5.6550 REMARK 3 S TENSOR REMARK 3 S11: 0.1503 S12: 0.0252 S13: 0.0057 REMARK 3 S21: 0.3628 S22: 0.0951 S23: -0.5963 REMARK 3 S31: -0.3643 S32: 0.4014 S33: -0.2455 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9968 -31.8050 17.3042 REMARK 3 T TENSOR REMARK 3 T11: -0.0843 T22: -0.0811 REMARK 3 T33: -0.0733 T12: -0.0753 REMARK 3 T13: 0.0808 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 8.1072 L22: 11.0201 REMARK 3 L33: 6.6740 L12: 4.8514 REMARK 3 L13: -6.8009 L23: -1.2653 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: 0.4432 S13: -0.5281 REMARK 3 S21: -0.8586 S22: 0.4133 S23: 0.1225 REMARK 3 S31: 1.0782 S32: 0.6501 S33: -0.3984 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9663 -35.3834 54.1000 REMARK 3 T TENSOR REMARK 3 T11: -0.1040 T22: 0.0400 REMARK 3 T33: -0.0759 T12: -0.0464 REMARK 3 T13: -0.0593 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 9.2220 L22: 8.3591 REMARK 3 L33: 3.3069 L12: -6.3396 REMARK 3 L13: -3.4590 L23: -0.4577 REMARK 3 S TENSOR REMARK 3 S11: 0.3799 S12: -0.8967 S13: -0.2830 REMARK 3 S21: 1.0381 S22: 0.0114 S23: -0.7632 REMARK 3 S31: 0.8367 S32: 0.4313 S33: -0.3912 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8865 -18.1087 25.2031 REMARK 3 T TENSOR REMARK 3 T11: -0.0274 T22: 0.0265 REMARK 3 T33: 0.0816 T12: 0.0142 REMARK 3 T13: 0.0194 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 10.6468 L22: 3.2840 REMARK 3 L33: 1.8622 L12: -3.1910 REMARK 3 L13: -0.9310 L23: -1.7569 REMARK 3 S TENSOR REMARK 3 S11: 0.2287 S12: -0.2648 S13: 1.3485 REMARK 3 S21: 0.3411 S22: -0.1980 S23: -0.6135 REMARK 3 S31: -0.3893 S32: -0.5932 S33: -0.0307 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 74 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2425 -21.9486 45.6235 REMARK 3 T TENSOR REMARK 3 T11: -0.0539 T22: -0.0666 REMARK 3 T33: 0.0760 T12: -0.0224 REMARK 3 T13: 0.1017 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.9003 L22: 9.8919 REMARK 3 L33: 4.1237 L12: 1.0709 REMARK 3 L13: -1.3629 L23: 2.5926 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: 0.7537 S13: 0.4440 REMARK 3 S21: 0.0706 S22: -0.0639 S23: 1.3095 REMARK 3 S31: -0.5304 S32: 0.1951 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9308 -31.5307 25.5487 REMARK 3 T TENSOR REMARK 3 T11: -0.0253 T22: 0.0459 REMARK 3 T33: -0.0142 T12: -0.0526 REMARK 3 T13: 0.0018 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 4.4727 L22: 1.2048 REMARK 3 L33: 3.0191 L12: -0.9717 REMARK 3 L13: -1.3183 L23: 1.9032 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.3908 S13: -0.0964 REMARK 3 S21: -0.4990 S22: 0.0715 S23: -0.0269 REMARK 3 S31: 0.0621 S32: -0.6076 S33: -0.0824 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8502 -28.6977 45.2460 REMARK 3 T TENSOR REMARK 3 T11: -0.0055 T22: 0.0302 REMARK 3 T33: 0.0010 T12: -0.0515 REMARK 3 T13: 0.0016 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.9071 L22: 1.4223 REMARK 3 L33: 4.0894 L12: 0.1819 REMARK 3 L13: 0.9452 L23: -1.8847 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.4418 S13: 0.2087 REMARK 3 S21: 0.4321 S22: -0.1344 S23: -0.0661 REMARK 3 S31: -0.3727 S32: 0.3085 S33: 0.1436 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 5 REMARK 3 RESIDUE RANGE : C 94 C 99 REMARK 3 RESIDUE RANGE : D 1 D 5 REMARK 3 RESIDUE RANGE : D 94 D 99 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0775 50.7538 -8.8579 REMARK 3 T TENSOR REMARK 3 T11: -0.0682 T22: -0.0160 REMARK 3 T33: -0.0016 T12: 0.0583 REMARK 3 T13: 0.0093 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.3632 L22: 5.8021 REMARK 3 L33: 1.4331 L12: 3.3235 REMARK 3 L13: 0.1596 L23: -1.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: -0.1193 S13: 0.2557 REMARK 3 S21: -0.1123 S22: 0.0429 S23: 0.4341 REMARK 3 S31: -0.2994 S32: -0.5380 S33: -0.1176 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 25 C 30 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2203 40.1592 -7.8884 REMARK 3 T TENSOR REMARK 3 T11: 0.0163 T22: -0.0193 REMARK 3 T33: -0.0223 T12: 0.0238 REMARK 3 T13: -0.0195 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 10.6665 L22: 0.0371 REMARK 3 L33: 7.4194 L12: -0.5179 REMARK 3 L13: 1.8350 L23: -0.3802 REMARK 3 S TENSOR REMARK 3 S11: 0.1369 S12: -0.1421 S13: -0.0612 REMARK 3 S21: -0.6059 S22: -0.0307 S23: 0.5022 REMARK 3 S31: 0.2409 S32: 0.3429 S33: -0.1062 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 25 D 30 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3138 48.9827 -9.8285 REMARK 3 T TENSOR REMARK 3 T11: -0.0243 T22: 0.0228 REMARK 3 T33: -0.0274 T12: 0.0060 REMARK 3 T13: 0.0222 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 5.2711 L22: 7.3562 REMARK 3 L33: 6.0953 L12: -6.2254 REMARK 3 L13: -2.6345 L23: 3.2465 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: -0.2962 S13: 0.2806 REMARK 3 S21: 0.0395 S22: 0.0387 S23: 0.0702 REMARK 3 S31: 0.3525 S32: 0.3496 S33: -0.1638 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 45 C 55 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2578 32.5055 -8.6074 REMARK 3 T TENSOR REMARK 3 T11: -0.0186 T22: -0.0015 REMARK 3 T33: -0.0439 T12: 0.0817 REMARK 3 T13: -0.0900 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 5.5336 L22: 11.1771 REMARK 3 L33: 10.9250 L12: 5.2034 REMARK 3 L13: -6.2627 L23: -10.4110 REMARK 3 S TENSOR REMARK 3 S11: 0.4685 S12: -0.2922 S13: -0.0381 REMARK 3 S21: -0.2193 S22: -0.7817 S23: -0.0946 REMARK 3 S31: 0.3242 S32: 0.3164 S33: 0.3133 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 45 D 55 REMARK 3 ORIGIN FOR THE GROUP (A): 28.9635 44.1672 -9.1136 REMARK 3 T TENSOR REMARK 3 T11: -0.0685 T22: 0.0179 REMARK 3 T33: -0.0007 T12: 0.0533 REMARK 3 T13: -0.0416 T23: -0.1176 REMARK 3 L TENSOR REMARK 3 L11: 3.9552 L22: 6.8109 REMARK 3 L33: 12.1575 L12: 2.8761 REMARK 3 L13: -6.0101 L23: -8.1487 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: -0.5334 S13: -0.0594 REMARK 3 S21: -0.6541 S22: -0.1868 S23: -0.1318 REMARK 3 S31: -0.0579 S32: 0.2712 S33: 0.1576 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 60 C 66 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2978 35.4283 5.7032 REMARK 3 T TENSOR REMARK 3 T11: -0.1479 T22: 0.0038 REMARK 3 T33: -0.0699 T12: -0.0877 REMARK 3 T13: -0.0375 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.3674 L22: 40.2324 REMARK 3 L33: 9.9965 L12: -5.7256 REMARK 3 L13: 1.2951 L23: 3.2407 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: -0.0775 S13: -0.1204 REMARK 3 S21: 1.1289 S22: -0.2375 S23: 0.7333 REMARK 3 S31: 0.6666 S32: -0.5857 S33: 0.3120 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 60 D 66 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3515 56.4136 -23.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: -0.2234 REMARK 3 T33: -0.1495 T12: 0.0395 REMARK 3 T13: 0.0604 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 62.6812 L22: 12.7413 REMARK 3 L33: 4.2739 L12: 20.9494 REMARK 3 L13: 7.4837 L23: 2.6386 REMARK 3 S TENSOR REMARK 3 S11: -0.6722 S12: -0.0112 S13: 0.4600 REMARK 3 S21: -0.6402 S22: 0.1926 S23: 0.2074 REMARK 3 S31: -0.7045 S32: 0.1819 S33: 0.4796 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 68 C 72 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4694 39.9292 5.1474 REMARK 3 T TENSOR REMARK 3 T11: -0.0639 T22: 0.2306 REMARK 3 T33: -0.0758 T12: -0.0906 REMARK 3 T13: -0.0791 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 11.4932 L22: 0.3593 REMARK 3 L33: 3.6773 L12: 2.0323 REMARK 3 L13: -6.5010 L23: -1.1495 REMARK 3 S TENSOR REMARK 3 S11: 0.7966 S12: 0.0100 S13: 0.1258 REMARK 3 S21: -0.2139 S22: -1.3659 S23: 1.7763 REMARK 3 S31: 0.1160 S32: -1.5218 S33: 0.5693 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 68 D 72 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9550 58.5295 -23.5768 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: -0.1018 REMARK 3 T33: -0.0973 T12: 0.1012 REMARK 3 T13: 0.0060 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 26.8291 L22: 7.7937 REMARK 3 L33: 6.6278 L12: 4.2374 REMARK 3 L13: 2.7481 L23: -5.8518 REMARK 3 S TENSOR REMARK 3 S11: -0.6932 S12: 0.9920 S13: 0.5184 REMARK 3 S21: -0.9519 S22: 0.6358 S23: 0.5105 REMARK 3 S31: -0.6606 S32: 0.1013 S33: 0.0573 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 74 C 84 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9395 36.5841 0.3617 REMARK 3 T TENSOR REMARK 3 T11: -0.0250 T22: -0.0155 REMARK 3 T33: -0.0124 T12: -0.0233 REMARK 3 T13: -0.0421 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.0081 L22: 4.2083 REMARK 3 L33: 2.3292 L12: 2.4745 REMARK 3 L13: 0.7215 L23: 1.3375 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: 0.2202 S13: -0.0649 REMARK 3 S21: 0.0934 S22: 0.1866 S23: -0.2248 REMARK 3 S31: 0.3069 S32: 0.3439 S33: -0.3083 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 74 D 84 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2982 45.8608 -18.0685 REMARK 3 T TENSOR REMARK 3 T11: -0.0250 T22: -0.0290 REMARK 3 T33: 0.0033 T12: -0.0119 REMARK 3 T13: 0.0257 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 0.9455 L22: 4.0410 REMARK 3 L33: 4.0129 L12: 1.7334 REMARK 3 L13: 0.6985 L23: -0.4571 REMARK 3 S TENSOR REMARK 3 S11: 0.2039 S12: 0.0654 S13: -0.0558 REMARK 3 S21: 0.1789 S22: 0.1747 S23: -0.1280 REMARK 3 S31: 0.0047 S32: 0.4501 S33: -0.3786 REMARK 3 REMARK 3 TLS GROUP : 25 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 86 C 92 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9268 38.9595 -4.4965 REMARK 3 T TENSOR REMARK 3 T11: -0.0611 T22: -0.0086 REMARK 3 T33: -0.0064 T12: -0.0305 REMARK 3 T13: -0.0256 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 7.5006 L22: 0.3045 REMARK 3 L33: 4.3057 L12: 1.4307 REMARK 3 L13: -5.3535 L23: -0.8973 REMARK 3 S TENSOR REMARK 3 S11: 0.4123 S12: -0.3703 S13: -0.3944 REMARK 3 S21: 0.0767 S22: -0.1535 S23: 0.0813 REMARK 3 S31: 0.1287 S32: -0.1482 S33: -0.2588 REMARK 3 REMARK 3 TLS GROUP : 26 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 86 D 92 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2115 55.0308 -13.1973 REMARK 3 T TENSOR REMARK 3 T11: 0.0364 T22: -0.0685 REMARK 3 T33: -0.0001 T12: -0.0019 REMARK 3 T13: -0.0006 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 6.6554 L22: 7.6490 REMARK 3 L33: 4.3712 L12: -4.4077 REMARK 3 L13: 2.8284 L23: -5.7448 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: 0.0325 S13: 0.1399 REMARK 3 S21: -0.6056 S22: 0.2129 S23: -0.1152 REMARK 3 S31: -0.6860 S32: 0.1496 S33: -0.3099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 133 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 23.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: REFER CITATION, PH 6.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.40733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.81467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.11100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.51833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.70367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 ASN A 37 CG OD1 ND2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 LYS C 41 CG CD CE NZ REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 LYS C 55 CG CD CE NZ REMARK 470 ILE C 64 CD1 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 LYS D 41 CG CD CE NZ REMARK 470 LYS D 43 CG CD CE NZ REMARK 470 LYS D 55 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS B 95 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 67 CB CYS B 67 SG -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU D 34 157.64 -47.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 478 B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 478 C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 606 DBREF 3EKP A 1 99 UNP P03369 POL_HV1A2 491 589 DBREF 3EKP B 1 99 UNP P03369 POL_HV1A2 491 589 DBREF 3EKP C 1 99 UNP P03369 POL_HV1A2 491 589 DBREF 3EKP D 1 99 UNP P03369 POL_HV1A2 491 589 SEQADV 3EKP LYS A 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 3EKP ILE A 10 UNP P03369 LEU 500 ENGINEERED MUTATION SEQADV 3EKP VAL A 48 UNP P03369 GLY 538 ENGINEERED MUTATION SEQADV 3EKP VAL A 54 UNP P03369 ILE 544 ENGINEERED MUTATION SEQADV 3EKP ILE A 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 3EKP ALA A 82 UNP P03369 VAL 572 ENGINEERED MUTATION SEQADV 3EKP LYS B 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 3EKP ILE B 10 UNP P03369 LEU 500 ENGINEERED MUTATION SEQADV 3EKP VAL B 48 UNP P03369 GLY 538 ENGINEERED MUTATION SEQADV 3EKP VAL B 54 UNP P03369 ILE 544 ENGINEERED MUTATION SEQADV 3EKP ILE B 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 3EKP ALA B 82 UNP P03369 VAL 572 ENGINEERED MUTATION SEQADV 3EKP LYS C 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 3EKP ILE C 10 UNP P03369 LEU 500 ENGINEERED MUTATION SEQADV 3EKP VAL C 48 UNP P03369 GLY 538 ENGINEERED MUTATION SEQADV 3EKP VAL C 54 UNP P03369 ILE 544 ENGINEERED MUTATION SEQADV 3EKP ILE C 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 3EKP ALA C 82 UNP P03369 VAL 572 ENGINEERED MUTATION SEQADV 3EKP LYS D 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 3EKP ILE D 10 UNP P03369 LEU 500 ENGINEERED MUTATION SEQADV 3EKP VAL D 48 UNP P03369 GLY 538 ENGINEERED MUTATION SEQADV 3EKP VAL D 54 UNP P03369 ILE 544 ENGINEERED MUTATION SEQADV 3EKP ILE D 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 3EKP ALA D 82 UNP P03369 VAL 572 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO ILE VAL THR ILE SEQRES 2 A 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 A 99 GLY LYS TRP LYS PRO LYS MET ILE VAL GLY ILE GLY GLY SEQRES 5 A 99 PHE VAL LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 A 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP LYS ARG PRO ILE VAL THR ILE SEQRES 2 B 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 B 99 GLY LYS TRP LYS PRO LYS MET ILE VAL GLY ILE GLY GLY SEQRES 5 B 99 PHE VAL LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 B 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 B 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 C 99 PRO GLN ILE THR LEU TRP LYS ARG PRO ILE VAL THR ILE SEQRES 2 C 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 C 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 C 99 GLY LYS TRP LYS PRO LYS MET ILE VAL GLY ILE GLY GLY SEQRES 5 C 99 PHE VAL LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 C 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 C 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 C 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 D 99 PRO GLN ILE THR LEU TRP LYS ARG PRO ILE VAL THR ILE SEQRES 2 D 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 D 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 D 99 GLY LYS TRP LYS PRO LYS MET ILE VAL GLY ILE GLY GLY SEQRES 5 D 99 PHE VAL LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 D 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 D 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 D 99 GLN ILE GLY CYS THR LEU ASN PHE HET PO4 A 501 5 HET ACT A 601 4 HET ACT A 602 4 HET ACT A 603 4 HET 478 B 200 35 HET PO4 B 502 5 HET PO4 B 503 5 HET PO4 B 505 5 HET ACT B 604 4 HET ACT B 605 4 HET ACT B 606 4 HET 478 C 200 35 HET ACT C 601 4 HET ACT C 603 4 HET ACT C 604 4 HET ACT C 605 4 HET ACT D 602 4 HET ACT D 606 4 HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM 478 {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL- HETNAM 2 478 2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL HETNAM 3 478 ESTER HETSYN 478 AMPRENAVIR FORMUL 5 PO4 4(O4 P 3-) FORMUL 6 ACT 12(C2 H3 O2 1-) FORMUL 9 478 2(C25 H35 N3 O6 S) FORMUL 23 HOH *262(H2 O) HELIX 1 1 GLY A 86 ILE A 93 1 8 HELIX 2 2 GLY B 86 ILE B 93 1 8 HELIX 3 3 GLY C 86 THR C 91 1 6 HELIX 4 4 GLY D 86 THR D 91 1 6 HELIX 5 5 GLN D 92 GLY D 94 5 3 SHEET 1 A 4 GLN A 2 ILE A 3 0 SHEET 2 A 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N THR A 96 O ASN B 98 SHEET 4 A 4 GLN B 2 ILE B 3 -1 O ILE B 3 N LEU A 97 SHEET 1 B 8 LYS A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O VAL A 56 N LYS A 45 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O GLY A 73 N ILE A 62 SHEET 4 B 8 VAL A 32 LEU A 33 1 N LEU A 33 O LEU A 76 SHEET 5 B 8 ILE A 84 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 ILE A 10 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N ARG A 14 SHEET 1 C 8 LYS B 43 GLY B 49 0 SHEET 2 C 8 GLY B 52 ILE B 66 -1 O GLN B 58 N LYS B 43 SHEET 3 C 8 HIS B 69 VAL B 77 -1 O GLY B 73 N ILE B 62 SHEET 4 C 8 VAL B 32 LEU B 33 1 N LEU B 33 O LEU B 76 SHEET 5 C 8 ILE B 84 ILE B 85 -1 O ILE B 84 N VAL B 32 SHEET 6 C 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 7 C 8 ILE B 10 ILE B 15 -1 N ILE B 13 O LYS B 20 SHEET 8 C 8 GLY B 52 ILE B 66 -1 O GLU B 65 N ARG B 14 SHEET 1 D 4 GLN C 2 THR C 4 0 SHEET 2 D 4 THR D 96 ASN D 98 -1 O LEU D 97 N ILE C 3 SHEET 3 D 4 THR C 96 ASN C 98 -1 N THR C 96 O ASN D 98 SHEET 4 D 4 GLN D 2 THR D 4 -1 O ILE D 3 N LEU C 97 SHEET 1 E 8 LYS C 43 GLY C 49 0 SHEET 2 E 8 GLY C 52 ILE C 66 -1 O VAL C 56 N LYS C 45 SHEET 3 E 8 HIS C 69 VAL C 77 -1 O ALA C 71 N ILE C 64 SHEET 4 E 8 VAL C 32 LEU C 33 1 N LEU C 33 O LEU C 76 SHEET 5 E 8 ILE C 84 ILE C 85 -1 O ILE C 84 N VAL C 32 SHEET 6 E 8 GLN C 18 LEU C 24 1 N LEU C 23 O ILE C 85 SHEET 7 E 8 ILE C 10 ILE C 15 -1 N ILE C 13 O LYS C 20 SHEET 8 E 8 GLY C 52 ILE C 66 -1 O GLU C 65 N ARG C 14 SHEET 1 F 8 LYS D 43 GLY D 49 0 SHEET 2 F 8 GLY D 52 ILE D 66 -1 O VAL D 56 N LYS D 45 SHEET 3 F 8 HIS D 69 VAL D 77 -1 O VAL D 75 N TYR D 59 SHEET 4 F 8 VAL D 32 LEU D 33 1 N LEU D 33 O LEU D 76 SHEET 5 F 8 ILE D 84 ILE D 85 -1 O ILE D 84 N VAL D 32 SHEET 6 F 8 GLN D 18 LEU D 24 1 N LEU D 23 O ILE D 85 SHEET 7 F 8 ILE D 10 ILE D 15 -1 N ILE D 15 O GLN D 18 SHEET 8 F 8 GLY D 52 ILE D 66 -1 O GLU D 65 N ARG D 14 SITE 1 AC1 6 ARG A 14 GLY A 16 GLY A 17 PRO A 63 SITE 2 AC1 6 HOH A 665 MET D 46 SITE 1 AC2 4 THR A 12 GLU A 65 CYS A 67 GLY A 68 SITE 1 AC3 4 ALA A 71 ILE A 72 GLN A 92 ARG C 8 SITE 1 AC4 2 ARG A 8 HOH A 668 SITE 1 AC5 19 ASP A 25 GLY A 27 ALA A 28 ASP A 30 SITE 2 AC5 19 VAL A 32 GLY A 49 ILE A 50 ILE A 84 SITE 3 AC5 19 ASP B 25 GLY B 27 ALA B 28 ASP B 30 SITE 4 AC5 19 VAL B 32 VAL B 48 GLY B 49 ILE B 50 SITE 5 AC5 19 PRO B 81 HOH B 666 HOH B 670 SITE 1 AC6 3 LYS B 7 ARG B 8 HOH B 658 SITE 1 AC7 5 ARG B 14 GLY B 16 GLY B 17 PRO B 63 SITE 2 AC7 5 HOH B 620 SITE 1 AC8 8 THR B 12 ILE B 13 ARG B 14 LEU B 19 SITE 2 AC8 8 GLU B 65 ILE B 66 CYS B 67 GLY B 68 SITE 1 AC9 6 THR B 91 GLN B 92 HOH B 628 GLU D 34 SITE 2 AC9 6 ALA D 82 ASN D 83 SITE 1 BC1 5 ALA B 71 ILE B 72 GLN B 92 HOH B 643 SITE 2 BC1 5 ARG D 8 SITE 1 BC2 3 GLY B 73 THR B 74 ASN B 88 SITE 1 BC3 20 ASP C 25 GLY C 27 ALA C 28 ASP C 30 SITE 2 BC3 20 VAL C 32 VAL C 48 GLY C 49 ILE C 50 SITE 3 BC3 20 PRO C 81 ILE C 84 HOH C 683 ASP D 25 SITE 4 BC3 20 GLY D 27 ALA D 28 ASP D 30 VAL D 32 SITE 5 BC3 20 VAL D 48 GLY D 49 ILE D 50 ILE D 84 SITE 1 BC4 6 THR C 12 ILE C 13 ARG C 14 GLU C 65 SITE 2 BC4 6 CYS C 67 GLY C 68 SITE 1 BC5 5 THR A 91 GLN A 92 GLU C 34 ALA C 82 SITE 2 BC5 5 ASN C 83 SITE 1 BC6 4 GLY A 68 HIS A 69 LYS A 70 PRO C 81 SITE 1 BC7 3 LYS C 7 ARG C 8 HOH C 624 SITE 1 BC8 5 THR D 12 GLU D 65 ILE D 66 CYS D 67 SITE 2 BC8 5 GLY D 68 SITE 1 BC9 4 ILE D 72 GLY D 73 THR D 74 ASN D 88 CRYST1 91.969 91.969 106.222 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010873 0.006278 0.000000 0.00000 SCALE2 0.000000 0.012555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009414 0.00000 MASTER 876 0 18 5 40 0 34 6 0 0 0 32 END