HEADER HYDROLASE 08-SEP-08 3EF5 TITLE STRUCTURE OF THE RNA PYROPHOSPHOHYDROLASE BDRPPH IN COMPLEX WITH DGTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS; SOURCE 3 ORGANISM_TAXID: 959; SOURCE 4 STRAIN: HD100; SOURCE 5 GENE: MUTT, BD0714; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS NUDIX, RNA PYROPHOSPHOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MESSING,S.B.GABELLI,L.M.AMZEL REVDAT 3 25-OCT-17 3EF5 1 REMARK REVDAT 2 13-JUL-11 3EF5 1 VERSN REVDAT 1 24-MAR-09 3EF5 0 JRNL AUTH S.A.MESSING,S.B.GABELLI,Q.LIU,H.CELESNIK,J.G.BELASCO, JRNL AUTH 2 S.A.PINEIRO,L.M.AMZEL JRNL TITL STRUCTURE AND BIOLOGICAL FUNCTION OF THE RNA JRNL TITL 2 PYROPHOSPHOHYDROLASE BDRPPH FROM BDELLOVIBRIO BACTERIOVORUS. JRNL REF STRUCTURE V. 17 472 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19278661 JRNL DOI 10.1016/J.STR.2008.12.022 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 13703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 844 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2131 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.15000 REMARK 3 B22 (A**2) : 2.57000 REMARK 3 B33 (A**2) : -4.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.473 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2256 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3062 ; 1.246 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 6.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;35.206 ;24.019 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;18.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.665 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1691 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 882 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1420 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 78 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.133 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1338 ; 0.439 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2061 ; 0.747 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 1.092 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1001 ; 1.796 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 21 REMARK 3 RESIDUE RANGE : A 40 A 49 REMARK 3 RESIDUE RANGE : A 90 A 96 REMARK 3 RESIDUE RANGE : A 112 A 118 REMARK 3 RESIDUE RANGE : A 148 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8200 -14.1664 -11.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.5016 T22: 0.6665 REMARK 3 T33: 0.5038 T12: -0.1918 REMARK 3 T13: -0.0723 T23: 0.1174 REMARK 3 L TENSOR REMARK 3 L11: 6.9922 L22: 15.0928 REMARK 3 L33: 3.2220 L12: -0.7383 REMARK 3 L13: 2.7487 L23: 5.3802 REMARK 3 S TENSOR REMARK 3 S11: 0.5028 S12: -0.3728 S13: 0.8298 REMARK 3 S21: -0.0226 S22: -0.7551 S23: -1.6284 REMARK 3 S31: -0.0269 S32: 0.9342 S33: 0.2524 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 39 REMARK 3 RESIDUE RANGE : A 50 A 89 REMARK 3 RESIDUE RANGE : A 97 A 111 REMARK 3 RESIDUE RANGE : A 119 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0015 -17.9579 -15.2407 REMARK 3 T TENSOR REMARK 3 T11: -0.1574 T22: -0.0441 REMARK 3 T33: -0.1798 T12: -0.1016 REMARK 3 T13: 0.0238 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 4.7721 L22: 5.8748 REMARK 3 L33: 4.9248 L12: -2.2064 REMARK 3 L13: 1.6515 L23: -0.5362 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: -0.0967 S13: 0.0368 REMARK 3 S21: 0.0336 S22: 0.0157 S23: -0.2056 REMARK 3 S31: 0.1705 S32: 0.3587 S33: -0.1287 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 21 REMARK 3 RESIDUE RANGE : B 40 B 42 REMARK 3 RESIDUE RANGE : B 47 B 49 REMARK 3 RESIDUE RANGE : B 90 B 96 REMARK 3 RESIDUE RANGE : B 112 B 118 REMARK 3 RESIDUE RANGE : B 148 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9428 6.7909 -12.2755 REMARK 3 T TENSOR REMARK 3 T11: 0.4532 T22: 0.3902 REMARK 3 T33: 0.2182 T12: -0.2208 REMARK 3 T13: -0.2619 T23: 0.1532 REMARK 3 L TENSOR REMARK 3 L11: 10.8664 L22: 9.6520 REMARK 3 L33: 3.5230 L12: -0.4812 REMARK 3 L13: -4.7346 L23: -3.5402 REMARK 3 S TENSOR REMARK 3 S11: -0.7745 S12: 0.3578 S13: 1.3372 REMARK 3 S21: -0.6696 S22: 0.5348 S23: -0.2022 REMARK 3 S31: -1.0054 S32: -0.0753 S33: 0.2397 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 39 REMARK 3 RESIDUE RANGE : B 50 B 89 REMARK 3 RESIDUE RANGE : B 97 B 111 REMARK 3 RESIDUE RANGE : B 119 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8379 -0.1123 -7.9333 REMARK 3 T TENSOR REMARK 3 T11: -0.0288 T22: -0.1694 REMARK 3 T33: -0.1790 T12: -0.1033 REMARK 3 T13: -0.0301 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 6.1113 L22: 4.9998 REMARK 3 L33: 4.6317 L12: -2.2370 REMARK 3 L13: 0.0081 L23: -1.8522 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: 0.0172 S13: 0.1501 REMARK 3 S21: -0.1255 S22: 0.1111 S23: -0.0315 REMARK 3 S31: -0.4139 S32: -0.1694 S33: -0.1312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.2670 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NA ACETATE, PH 7, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.22300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.22400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.22300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.22400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: GEL FILTRATION WAS USED TO DETERMINE THE BIOLOGICAL REMARK 300 ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 GLN A 11 REMARK 465 LYS A 12 REMARK 465 LYS A 13 REMARK 465 SER A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 152 REMARK 465 LYS A 153 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 GLU B 8 REMARK 465 SER B 9 REMARK 465 LYS B 10 REMARK 465 GLN B 11 REMARK 465 LYS B 12 REMARK 465 LYS B 13 REMARK 465 SER B 14 REMARK 465 LYS B 15 REMARK 465 ILE B 16 REMARK 465 ARG B 17 REMARK 465 LYS B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 43 REMARK 465 ASN B 44 REMARK 465 SER B 45 REMARK 465 LEU B 46 REMARK 465 LYS B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 42 87.40 -62.97 REMARK 500 ASN A 44 15.73 -64.96 REMARK 500 MET A 118 146.23 -172.21 REMARK 500 TYR B 92 73.64 -117.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A3800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B3801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EEU RELATED DB: PDB REMARK 900 RELATED ID: 3EES RELATED DB: PDB DBREF 3EF5 A 1 153 UNP Q6MPX4 Q6MPX4_BDEBA 1 153 DBREF 3EF5 B 1 153 UNP Q6MPX4 Q6MPX4_BDEBA 1 153 SEQRES 1 A 153 MET THR ASP ASP SER ALA VAL GLU SER LYS GLN LYS LYS SEQRES 2 A 153 SER LYS ILE ARG LYS GLY HIS TRP ILE PRO VAL VAL ALA SEQRES 3 A 153 GLY PHE LEU ARG LYS ASP GLY LYS ILE LEU VAL GLY GLN SEQRES 4 A 153 ARG PRO GLU ASN ASN SER LEU ALA GLY GLN TRP GLU PHE SEQRES 5 A 153 PRO GLY GLY LYS ILE GLU ASN GLY GLU THR PRO GLU GLU SEQRES 6 A 153 ALA LEU ALA ARG GLU LEU ASN GLU GLU LEU GLY ILE GLU SEQRES 7 A 153 ALA GLU VAL GLY GLU LEU LYS LEU ALA CYS THR HIS SER SEQRES 8 A 153 TYR GLY ASP VAL GLY ILE LEU ILE LEU PHE TYR GLU ILE SEQRES 9 A 153 LEU TYR TRP LYS GLY GLU PRO ARG ALA LYS HIS HIS MET SEQRES 10 A 153 MET LEU GLU TRP ILE HIS PRO GLU GLU LEU LYS HIS ARG SEQRES 11 A 153 ASN ILE PRO GLU ALA ASN ARG LYS ILE LEU HIS LYS ILE SEQRES 12 A 153 TYR LYS ALA LEU GLY LEU GLU TRP ARG LYS SEQRES 1 B 153 MET THR ASP ASP SER ALA VAL GLU SER LYS GLN LYS LYS SEQRES 2 B 153 SER LYS ILE ARG LYS GLY HIS TRP ILE PRO VAL VAL ALA SEQRES 3 B 153 GLY PHE LEU ARG LYS ASP GLY LYS ILE LEU VAL GLY GLN SEQRES 4 B 153 ARG PRO GLU ASN ASN SER LEU ALA GLY GLN TRP GLU PHE SEQRES 5 B 153 PRO GLY GLY LYS ILE GLU ASN GLY GLU THR PRO GLU GLU SEQRES 6 B 153 ALA LEU ALA ARG GLU LEU ASN GLU GLU LEU GLY ILE GLU SEQRES 7 B 153 ALA GLU VAL GLY GLU LEU LYS LEU ALA CYS THR HIS SER SEQRES 8 B 153 TYR GLY ASP VAL GLY ILE LEU ILE LEU PHE TYR GLU ILE SEQRES 9 B 153 LEU TYR TRP LYS GLY GLU PRO ARG ALA LYS HIS HIS MET SEQRES 10 B 153 MET LEU GLU TRP ILE HIS PRO GLU GLU LEU LYS HIS ARG SEQRES 11 B 153 ASN ILE PRO GLU ALA ASN ARG LYS ILE LEU HIS LYS ILE SEQRES 12 B 153 TYR LYS ALA LEU GLY LEU GLU TRP ARG LYS HET DGT A3800 31 HET DGT B3801 31 HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE FORMUL 3 DGT 2(C10 H16 N5 O13 P3) FORMUL 5 HOH *44(H2 O) HELIX 1 1 THR A 62 GLY A 76 1 15 HELIX 2 2 HIS A 123 ARG A 130 5 8 HELIX 3 3 PRO A 133 LYS A 138 1 6 HELIX 4 4 ILE A 139 LEU A 147 1 9 HELIX 5 5 THR B 62 GLY B 76 1 15 HELIX 6 6 HIS B 123 ARG B 130 5 8 HELIX 7 7 PRO B 133 LYS B 138 1 6 HELIX 8 8 ILE B 139 LEU B 147 1 9 SHEET 1 A 4 GLY A 54 LYS A 56 0 SHEET 2 A 4 TRP A 21 PHE A 28 -1 N VAL A 25 O GLY A 55 SHEET 3 A 4 GLY A 96 GLU A 103 1 O LEU A 98 N VAL A 24 SHEET 4 A 4 LEU A 84 SER A 91 -1 N LYS A 85 O PHE A 101 SHEET 1 B 3 ARG A 30 LYS A 31 0 SHEET 2 B 3 LYS A 34 GLN A 39 -1 O LYS A 34 N LYS A 31 SHEET 3 B 3 TRP A 50 GLU A 51 -1 O GLU A 51 N GLY A 38 SHEET 1 C 3 ARG A 30 LYS A 31 0 SHEET 2 C 3 LYS A 34 GLN A 39 -1 O LYS A 34 N LYS A 31 SHEET 3 C 3 LEU A 119 ILE A 122 -1 O ILE A 122 N ILE A 35 SHEET 1 D 2 GLU A 78 GLU A 80 0 SHEET 2 D 2 TYR A 106 LYS A 108 -1 O TYR A 106 N GLU A 80 SHEET 1 E 4 GLY B 54 LYS B 56 0 SHEET 2 E 4 TRP B 21 PHE B 28 -1 N VAL B 25 O GLY B 55 SHEET 3 E 4 VAL B 95 GLU B 103 1 O LEU B 98 N VAL B 24 SHEET 4 E 4 LEU B 84 TYR B 92 -1 N LYS B 85 O PHE B 101 SHEET 1 F 3 ARG B 30 LYS B 31 0 SHEET 2 F 3 LYS B 34 GLN B 39 -1 O LYS B 34 N LYS B 31 SHEET 3 F 3 TRP B 50 GLU B 51 -1 O GLU B 51 N GLY B 38 SHEET 1 G 3 ARG B 30 LYS B 31 0 SHEET 2 G 3 LYS B 34 GLN B 39 -1 O LYS B 34 N LYS B 31 SHEET 3 G 3 MET B 118 ILE B 122 -1 O MET B 118 N GLN B 39 SHEET 1 H 2 GLU B 78 GLU B 80 0 SHEET 2 H 2 TYR B 106 LYS B 108 -1 O TYR B 106 N GLU B 80 SITE 1 AC1 12 VAL A 24 ARG A 40 PHE A 52 GLY A 54 SITE 2 AC1 12 GLY A 55 LYS A 56 ILE A 97 ILE A 99 SITE 3 AC1 12 PRO A 133 ASN A 136 HOH A3818 HOH A3819 SITE 1 AC2 12 VAL B 24 ARG B 40 GLU B 51 PHE B 52 SITE 2 AC2 12 GLY B 54 GLY B 55 LYS B 56 ILE B 97 SITE 3 AC2 12 ILE B 99 PRO B 133 ASN B 136 HOH B 176 CRYST1 68.446 68.448 92.740 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010783 0.00000 MASTER 409 0 2 8 24 0 6 6 0 0 0 24 END