HEADER HYDROLASE 05-SEP-08 3EEU TITLE STRUCTURE OF THE RNA PYROPHOSPHOHYDROLASE BDRPPH IN COMPLEX WITH TITLE 2 HOLMIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS; SOURCE 3 ORGANISM_TAXID: 959; SOURCE 4 STRAIN: HD100; SOURCE 5 GENE: MUTT, BD0714; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS NUDIX, RNA PYROPHOSPHOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MESSING,S.B.GABELLI,L.M.AMZEL REVDAT 4 04-APR-18 3EEU 1 REMARK REVDAT 3 25-OCT-17 3EEU 1 REMARK REVDAT 2 13-JUL-11 3EEU 1 VERSN REVDAT 1 24-MAR-09 3EEU 0 JRNL AUTH S.A.MESSING,S.B.GABELLI,Q.LIU,H.CELESNIK,J.G.BELASCO, JRNL AUTH 2 S.A.PINEIRO,L.M.AMZEL JRNL TITL STRUCTURE AND BIOLOGICAL FUNCTION OF THE RNA JRNL TITL 2 PYROPHOSPHOHYDROLASE BDRPPH FROM BDELLOVIBRIO BACTERIOVORUS. JRNL REF STRUCTURE V. 17 472 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19278661 JRNL DOI 10.1016/J.STR.2008.12.022 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1342 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.530 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2192 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2952 ; 1.361 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 6.009 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;33.965 ;24.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;16.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1664 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 856 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1383 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 127 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.002 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1362 ; 0.621 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2068 ; 0.966 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 987 ; 1.654 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 884 ; 2.407 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 20 REMARK 3 RESIDUE RANGE : A 40 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4288 47.0329 67.6265 REMARK 3 T TENSOR REMARK 3 T11: -0.0225 T22: 0.0497 REMARK 3 T33: 0.1510 T12: -0.0402 REMARK 3 T13: 0.1586 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.9324 L22: 26.6181 REMARK 3 L33: 2.5485 L12: -7.7896 REMARK 3 L13: -0.8514 L23: 1.6182 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: 0.0007 S13: 0.1465 REMARK 3 S21: -0.4990 S22: 0.4155 S23: -0.8183 REMARK 3 S31: -0.1284 S32: 0.4488 S33: -0.3276 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 39 REMARK 3 RESIDUE RANGE : A 50 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0916 42.4143 75.2528 REMARK 3 T TENSOR REMARK 3 T11: -0.2241 T22: -0.1864 REMARK 3 T33: -0.1601 T12: -0.0057 REMARK 3 T13: 0.0006 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.5160 L22: 3.3949 REMARK 3 L33: 3.1682 L12: -0.0892 REMARK 3 L13: -1.0509 L23: 1.0713 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: -0.1194 S13: 0.1685 REMARK 3 S21: -0.0235 S22: -0.0262 S23: -0.0237 REMARK 3 S31: -0.0735 S32: 0.0947 S33: -0.0612 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3728 51.2716 67.5344 REMARK 3 T TENSOR REMARK 3 T11: 0.0646 T22: -0.1657 REMARK 3 T33: 0.0518 T12: 0.0183 REMARK 3 T13: -0.0291 T23: 0.0572 REMARK 3 L TENSOR REMARK 3 L11: 2.5596 L22: 6.6405 REMARK 3 L33: 6.5869 L12: -0.3639 REMARK 3 L13: 0.7069 L23: 0.2943 REMARK 3 S TENSOR REMARK 3 S11: 0.1908 S12: 0.2528 S13: 0.2028 REMARK 3 S21: -1.0813 S22: -0.0026 S23: 0.3795 REMARK 3 S31: -0.2511 S32: -0.0336 S33: -0.1882 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 21 REMARK 3 RESIDUE RANGE : B 40 B 42 REMARK 3 RESIDUE RANGE : B 48 B 49 REMARK 3 RESIDUE RANGE : B 91 B 95 REMARK 3 RESIDUE RANGE : B 109 B 118 REMARK 3 RESIDUE RANGE : B 149 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6075 16.3559 70.2877 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.0845 REMARK 3 T33: 0.1838 T12: 0.0938 REMARK 3 T13: -0.0558 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 4.6166 L22: 3.3241 REMARK 3 L33: 1.5159 L12: 1.0049 REMARK 3 L13: 1.6861 L23: 0.2209 REMARK 3 S TENSOR REMARK 3 S11: -0.0729 S12: 0.1148 S13: -0.4130 REMARK 3 S21: 0.2487 S22: 0.0793 S23: -0.6344 REMARK 3 S31: 0.1822 S32: 0.3856 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 39 REMARK 3 RESIDUE RANGE : B 50 B 90 REMARK 3 RESIDUE RANGE : B 96 B 108 REMARK 3 RESIDUE RANGE : B 119 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0800 20.9493 69.1147 REMARK 3 T TENSOR REMARK 3 T11: -0.1176 T22: -0.1577 REMARK 3 T33: -0.1698 T12: 0.0199 REMARK 3 T13: -0.0135 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 3.2597 L22: 3.4590 REMARK 3 L33: 1.6619 L12: 0.5824 REMARK 3 L13: -0.0514 L23: -0.4010 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.0352 S13: -0.2553 REMARK 3 S21: -0.0078 S22: -0.0733 S23: -0.0908 REMARK 3 S31: 0.1190 S32: 0.0393 S33: 0.0082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.4380 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NA ACETATE, HANGING DROP, REMARK 280 TEMPERATURE 298K, PH 4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.61000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.30500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.30500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.61000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: GEL FILTRATION WAS USED TO DETERMINE THE BIOLOGICAL REMARK 300 ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 GLN A 11 REMARK 465 LYS A 12 REMARK 465 LYS A 13 REMARK 465 SER A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 465 ARG A 17 REMARK 465 TRP A 151 REMARK 465 ARG A 152 REMARK 465 LYS A 153 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 GLU B 8 REMARK 465 SER B 9 REMARK 465 LYS B 10 REMARK 465 GLN B 11 REMARK 465 LYS B 12 REMARK 465 LYS B 13 REMARK 465 SER B 14 REMARK 465 LYS B 15 REMARK 465 ILE B 16 REMARK 465 ARG B 17 REMARK 465 ASN B 43 REMARK 465 ASN B 44 REMARK 465 SER B 45 REMARK 465 LEU B 46 REMARK 465 ALA B 47 REMARK 465 ARG B 152 REMARK 465 LYS B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 70 HO HO A 154 2.17 REMARK 500 OE1 GLU B 70 HO HO B 155 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 29 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 131 90.46 -69.30 REMARK 500 TYR B 92 56.26 -106.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HO A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HO B 155 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EES RELATED DB: PDB DBREF 3EEU A 1 153 UNP Q6MPX4 Q6MPX4_BDEBA 1 153 DBREF 3EEU B 1 153 UNP Q6MPX4 Q6MPX4_BDEBA 1 153 SEQRES 1 A 153 MET THR ASP ASP SER ALA VAL GLU SER LYS GLN LYS LYS SEQRES 2 A 153 SER LYS ILE ARG LYS GLY HIS TRP ILE PRO VAL VAL ALA SEQRES 3 A 153 GLY PHE LEU ARG LYS ASP GLY LYS ILE LEU VAL GLY GLN SEQRES 4 A 153 ARG PRO GLU ASN ASN SER LEU ALA GLY GLN TRP GLU PHE SEQRES 5 A 153 PRO GLY GLY LYS ILE GLU ASN GLY GLU THR PRO GLU GLU SEQRES 6 A 153 ALA LEU ALA ARG GLU LEU ASN GLU GLU LEU GLY ILE GLU SEQRES 7 A 153 ALA GLU VAL GLY GLU LEU LYS LEU ALA CYS THR HIS SER SEQRES 8 A 153 TYR GLY ASP VAL GLY ILE LEU ILE LEU PHE TYR GLU ILE SEQRES 9 A 153 LEU TYR TRP LYS GLY GLU PRO ARG ALA LYS HIS HIS MET SEQRES 10 A 153 MET LEU GLU TRP ILE HIS PRO GLU GLU LEU LYS HIS ARG SEQRES 11 A 153 ASN ILE PRO GLU ALA ASN ARG LYS ILE LEU HIS LYS ILE SEQRES 12 A 153 TYR LYS ALA LEU GLY LEU GLU TRP ARG LYS SEQRES 1 B 153 MET THR ASP ASP SER ALA VAL GLU SER LYS GLN LYS LYS SEQRES 2 B 153 SER LYS ILE ARG LYS GLY HIS TRP ILE PRO VAL VAL ALA SEQRES 3 B 153 GLY PHE LEU ARG LYS ASP GLY LYS ILE LEU VAL GLY GLN SEQRES 4 B 153 ARG PRO GLU ASN ASN SER LEU ALA GLY GLN TRP GLU PHE SEQRES 5 B 153 PRO GLY GLY LYS ILE GLU ASN GLY GLU THR PRO GLU GLU SEQRES 6 B 153 ALA LEU ALA ARG GLU LEU ASN GLU GLU LEU GLY ILE GLU SEQRES 7 B 153 ALA GLU VAL GLY GLU LEU LYS LEU ALA CYS THR HIS SER SEQRES 8 B 153 TYR GLY ASP VAL GLY ILE LEU ILE LEU PHE TYR GLU ILE SEQRES 9 B 153 LEU TYR TRP LYS GLY GLU PRO ARG ALA LYS HIS HIS MET SEQRES 10 B 153 MET LEU GLU TRP ILE HIS PRO GLU GLU LEU LYS HIS ARG SEQRES 11 B 153 ASN ILE PRO GLU ALA ASN ARG LYS ILE LEU HIS LYS ILE SEQRES 12 B 153 TYR LYS ALA LEU GLY LEU GLU TRP ARG LYS HET HO A 154 1 HET ACT A1307 4 HET ACT A1308 4 HET CL B 154 1 HET HO B 155 1 HETNAM HO HOLMIUM ATOM HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION FORMUL 3 HO 2(HO) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 6 CL CL 1- FORMUL 8 HOH *115(H2 O) HELIX 1 1 THR A 62 GLY A 76 1 15 HELIX 2 2 HIS A 123 ARG A 130 5 8 HELIX 3 3 PRO A 133 ILE A 139 1 7 HELIX 4 4 ILE A 139 GLY A 148 1 10 HELIX 5 5 THR B 62 GLY B 76 1 15 HELIX 6 6 HIS B 123 ARG B 130 5 8 HELIX 7 7 PRO B 133 LYS B 138 1 6 HELIX 8 8 ILE B 139 ALA B 146 1 8 SHEET 1 A 5 TRP A 50 GLU A 51 0 SHEET 2 A 5 LYS A 34 GLN A 39 -1 N GLY A 38 O GLU A 51 SHEET 3 A 5 HIS A 20 LYS A 31 -1 N LYS A 31 O LYS A 34 SHEET 4 A 5 VAL A 95 ILE A 104 1 O GLY A 96 N HIS A 20 SHEET 5 A 5 LEU A 84 TYR A 92 -1 N TYR A 92 O VAL A 95 SHEET 1 B 4 GLY A 54 LYS A 56 0 SHEET 2 B 4 HIS A 20 LYS A 31 -1 N VAL A 25 O GLY A 55 SHEET 3 B 4 LYS A 34 GLN A 39 -1 O LYS A 34 N LYS A 31 SHEET 4 B 4 MET A 118 ILE A 122 -1 O ILE A 122 N ILE A 35 SHEET 1 C 2 GLU A 78 GLU A 80 0 SHEET 2 C 2 TYR A 106 LYS A 108 -1 O TYR A 106 N GLU A 80 SHEET 1 D 5 TRP B 50 GLU B 51 0 SHEET 2 D 5 LYS B 34 GLN B 39 -1 N GLY B 38 O GLU B 51 SHEET 3 D 5 TRP B 21 LYS B 31 -1 N LYS B 31 O LYS B 34 SHEET 4 D 5 VAL B 95 ILE B 104 1 O LEU B 98 N VAL B 24 SHEET 5 D 5 LEU B 84 TYR B 92 -1 N HIS B 90 O ILE B 97 SHEET 1 E 4 GLY B 54 LYS B 56 0 SHEET 2 E 4 TRP B 21 LYS B 31 -1 N VAL B 25 O GLY B 55 SHEET 3 E 4 LYS B 34 GLN B 39 -1 O LYS B 34 N LYS B 31 SHEET 4 E 4 MET B 118 ILE B 122 -1 O MET B 118 N GLN B 39 SHEET 1 F 2 GLU B 78 GLU B 80 0 SHEET 2 F 2 TYR B 106 LYS B 108 -1 O LYS B 108 N GLU B 78 SITE 1 AC1 3 GLU A 70 GLU A 73 HOH A1309 SITE 1 AC2 6 LYS A 31 LYS A 34 TRP A 121 HIS A 129 SITE 2 AC2 6 HOH A 170 HOH A1333 SITE 1 AC3 6 ARG A 30 ASP A 32 HOH A 213 HOH A1318 SITE 2 AC3 6 HOH A1329 LYS B 128 SITE 1 AC4 3 GLU B 51 PHE B 52 ASN B 136 SITE 1 AC5 5 GLU B 70 GLU B 73 HOH B 156 HOH B 157 SITE 2 AC5 5 HOH B 158 CRYST1 70.212 70.212 99.915 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014243 0.008223 0.000000 0.00000 SCALE2 0.000000 0.016446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010009 0.00000 MASTER 468 0 5 8 22 0 8 6 0 0 0 24 END