HEADER HYDROLASE 02-SEP-08 3ECY TITLE CRYSTAL STRUCTURAL ANALYSIS OF DROSOPHILA MELANOGASTER DUTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG4584-PA, ISOFORM A (BCDNA.LD08534); COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.1.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: DUTPASE, BCDNA.LD08534, CG4584, DMEL_CG4584; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS JELLY-ROLL, DIMERIC ASSEMBLY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.TAKACS,O.BARABAS,B.G.VERTESSY REVDAT 4 13-JUL-11 3ECY 1 VERSN REVDAT 3 06-OCT-09 3ECY 1 JRNL REVDAT 2 24-FEB-09 3ECY 1 VERSN REVDAT 1 07-OCT-08 3ECY 0 JRNL AUTH E.TAKACS,O.BARABAS,M.V.PETOUKHOV,D.I.SVERGUN,B.G.VERTESSY JRNL TITL MOLECULAR SHAPE AND PROMINENT ROLE OF BETA-STRAND SWAPPING JRNL TITL 2 IN ORGANIZATION OF DUTPASE OLIGOMERS. JRNL REF FEBS LETT. V. 583 865 2009 JRNL REFN ISSN 0014-5793 JRNL PMID 19302784 JRNL DOI 10.1016/J.FEBSLET.2009.02.011 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1225 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.337 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1831 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2492 ; 1.938 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 7.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;32.792 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;15.143 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1386 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 659 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1264 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 124 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.283 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1213 ; 2.170 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1914 ; 3.096 ; 3.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 678 ; 4.471 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 573 ; 7.069 ;25.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9961 6.9993 10.8163 REMARK 3 T TENSOR REMARK 3 T11: -0.1136 T22: -0.0526 REMARK 3 T33: -0.0549 T12: 0.0382 REMARK 3 T13: -0.0568 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0648 L22: 1.3114 REMARK 3 L33: 1.3905 L12: 0.1954 REMARK 3 L13: -0.2970 L23: -0.7514 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0491 S13: -0.0076 REMARK 3 S21: 0.1326 S22: -0.0428 S23: 0.0012 REMARK 3 S31: -0.1497 S32: 0.1442 S33: 0.0506 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7874 6.9752 -10.8117 REMARK 3 T TENSOR REMARK 3 T11: -0.1238 T22: -0.0756 REMARK 3 T33: -0.0810 T12: -0.0285 REMARK 3 T13: -0.0553 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.1014 L22: 1.2441 REMARK 3 L33: 1.0569 L12: -0.1146 REMARK 3 L13: -0.3063 L23: 0.6831 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0606 S13: -0.0260 REMARK 3 S21: -0.1445 S22: -0.0318 S23: -0.0471 REMARK 3 S31: -0.1250 S32: -0.0897 S33: 0.0369 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ECY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB049166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8457 REMARK 200 MONOCHROMATOR : SI [111], HORIZONTALLY FOCUSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.450 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 14.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.84 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.74000 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Q5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM SUCCINATE BUFFER, 200 MM REMARK 280 SODIUM CHLORIDE, 30-35% METHYL-PENTANE DIOL, PH 4.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.69200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.34600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.03800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 PHE A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 ILE A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 LYS A 13 REMARK 465 LYS A 14 REMARK 465 MET A 15 REMARK 465 LYS A 16 REMARK 465 ILE A 17 REMARK 465 ASP A 18 REMARK 465 SER A 82 REMARK 465 GLY A 83 REMARK 465 LEU A 84 REMARK 465 ALA A 85 REMARK 465 VAL A 86 REMARK 465 LYS A 87 REMARK 465 ASN A 88 REMARK 465 GLU A 145 REMARK 465 ASP A 146 REMARK 465 THR A 147 REMARK 465 GLU A 148 REMARK 465 ARG A 149 REMARK 465 GLY A 150 REMARK 465 GLU A 151 REMARK 465 ALA A 152 REMARK 465 GLY A 153 REMARK 465 PHE A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 THR A 157 REMARK 465 GLY A 158 REMARK 465 VAL A 159 REMARK 465 LYS A 160 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 ASP B 5 REMARK 465 PHE B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 ILE B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 LYS B 13 REMARK 465 LYS B 14 REMARK 465 MET B 15 REMARK 465 LYS B 16 REMARK 465 ILE B 17 REMARK 465 ASP B 18 REMARK 465 SER B 82 REMARK 465 GLY B 83 REMARK 465 LEU B 84 REMARK 465 ALA B 85 REMARK 465 VAL B 86 REMARK 465 LYS B 87 REMARK 465 ASN B 88 REMARK 465 GLU B 145 REMARK 465 ASP B 146 REMARK 465 THR B 147 REMARK 465 GLU B 148 REMARK 465 ARG B 149 REMARK 465 GLY B 150 REMARK 465 GLU B 151 REMARK 465 ALA B 152 REMARK 465 GLY B 153 REMARK 465 PHE B 154 REMARK 465 GLY B 155 REMARK 465 SER B 156 REMARK 465 THR B 157 REMARK 465 GLY B 158 REMARK 465 VAL B 159 REMARK 465 LYS B 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 ARG A 36 CZ NH1 NH2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 ARG A 47 CZ NH1 NH2 REMARK 470 ARG A 57 CZ NH1 NH2 REMARK 470 LYS A 59 CE NZ REMARK 470 ILE A 61 CD1 REMARK 470 GLU A 72 CD OE1 OE2 REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 LYS A 120 NZ REMARK 470 ARG A 124 CZ NH1 NH2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 THR B 19 OG1 CG2 REMARK 470 GLU B 29 CD OE1 OE2 REMARK 470 ARG B 36 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ARG B 47 CZ NH1 NH2 REMARK 470 ARG B 57 CZ NH1 NH2 REMARK 470 LYS B 59 CD CE NZ REMARK 470 ILE B 61 CD1 REMARK 470 GLU B 72 CD OE1 OE2 REMARK 470 VAL B 92 CG1 CG2 REMARK 470 ASP B 114 OD1 OD2 REMARK 470 ARG B 124 CZ NH1 NH2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 35 51.41 75.78 REMARK 500 PRO A 80 131.53 -28.55 REMARK 500 ALA A 94 99.26 107.16 REMARK 500 PRO B 80 137.24 -29.77 REMARK 500 ALA B 94 87.02 107.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 34 VAL A 35 56.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 35 22.1 L L OUTSIDE RANGE REMARK 500 LEU B 144 22.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 217 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A 231 DISTANCE = 7.73 ANGSTROMS DBREF 3ECY A 1 160 UNP Q9V3I1 Q9V3I1_DROME 1 160 DBREF 3ECY B 1 160 UNP Q9V3I1 Q9V3I1_DROME 1 160 SEQRES 1 A 160 MET PRO SER THR ASP PHE ALA ASP ILE PRO ALA ALA LYS SEQRES 2 A 160 LYS MET LYS ILE ASP THR CYS VAL LEU ARG PHE ALA LYS SEQRES 3 A 160 LEU THR GLU ASN ALA LEU GLU PRO VAL ARG GLY SER ALA SEQRES 4 A 160 LYS ALA ALA GLY VAL ASP LEU ARG SER ALA TYR ASP VAL SEQRES 5 A 160 VAL VAL PRO ALA ARG GLY LYS ALA ILE VAL LYS THR ASP SEQRES 6 A 160 LEU GLN VAL GLN VAL PRO GLU GLY SER TYR GLY ARG VAL SEQRES 7 A 160 ALA PRO ARG SER GLY LEU ALA VAL LYS ASN PHE ILE ASP SEQRES 8 A 160 VAL GLY ALA GLY VAL VAL ASP GLU ASP TYR ARG GLY ASN SEQRES 9 A 160 LEU GLY VAL VAL LEU PHE ASN HIS SER ASP VAL ASP PHE SEQRES 10 A 160 GLU VAL LYS HIS GLY ASP ARG ILE ALA GLN PHE ILE CYS SEQRES 11 A 160 GLU ARG ILE PHE TYR PRO GLN LEU VAL MET VAL ASP LYS SEQRES 12 A 160 LEU GLU ASP THR GLU ARG GLY GLU ALA GLY PHE GLY SER SEQRES 13 A 160 THR GLY VAL LYS SEQRES 1 B 160 MET PRO SER THR ASP PHE ALA ASP ILE PRO ALA ALA LYS SEQRES 2 B 160 LYS MET LYS ILE ASP THR CYS VAL LEU ARG PHE ALA LYS SEQRES 3 B 160 LEU THR GLU ASN ALA LEU GLU PRO VAL ARG GLY SER ALA SEQRES 4 B 160 LYS ALA ALA GLY VAL ASP LEU ARG SER ALA TYR ASP VAL SEQRES 5 B 160 VAL VAL PRO ALA ARG GLY LYS ALA ILE VAL LYS THR ASP SEQRES 6 B 160 LEU GLN VAL GLN VAL PRO GLU GLY SER TYR GLY ARG VAL SEQRES 7 B 160 ALA PRO ARG SER GLY LEU ALA VAL LYS ASN PHE ILE ASP SEQRES 8 B 160 VAL GLY ALA GLY VAL VAL ASP GLU ASP TYR ARG GLY ASN SEQRES 9 B 160 LEU GLY VAL VAL LEU PHE ASN HIS SER ASP VAL ASP PHE SEQRES 10 B 160 GLU VAL LYS HIS GLY ASP ARG ILE ALA GLN PHE ILE CYS SEQRES 11 B 160 GLU ARG ILE PHE TYR PRO GLN LEU VAL MET VAL ASP LYS SEQRES 12 B 160 LEU GLU ASP THR GLU ARG GLY GLU ALA GLY PHE GLY SER SEQRES 13 B 160 THR GLY VAL LYS FORMUL 3 HOH *111(H2 O) SHEET 1 A 3 LEU A 66 GLN A 69 0 SHEET 2 A 3 VAL A 21 LYS A 26 -1 N ARG A 23 O GLN A 69 SHEET 3 A 3 GLN B 137 VAL B 141 1 O GLN B 137 N LEU A 22 SHEET 1 B 4 VAL A 44 ARG A 47 0 SHEET 2 B 4 ARG A 124 PHE A 134 -1 O ALA A 126 N LEU A 46 SHEET 3 B 4 ARG B 124 PHE B 134 -1 O ARG B 132 N ARG A 132 SHEET 4 B 4 VAL B 44 ARG B 47 -1 N VAL B 44 O PHE B 128 SHEET 1 C 6 GLY A 95 VAL A 97 0 SHEET 2 C 6 TYR A 75 ALA A 79 -1 N VAL A 78 O GLY A 95 SHEET 3 C 6 ARG A 124 PHE A 134 -1 O GLN A 127 N ALA A 79 SHEET 4 C 6 ARG B 124 PHE B 134 -1 O ARG B 132 N ARG A 132 SHEET 5 C 6 TYR B 75 ALA B 79 -1 N ALA B 79 O GLN B 127 SHEET 6 C 6 GLY B 95 ASP B 98 -1 O GLY B 95 N VAL B 78 SHEET 1 D 2 VAL A 52 VAL A 54 0 SHEET 2 D 2 PHE A 117 VAL A 119 -1 O VAL A 119 N VAL A 52 SHEET 1 E 3 LYS A 59 LYS A 63 0 SHEET 2 E 3 GLY A 106 ASN A 111 -1 O VAL A 107 N VAL A 62 SHEET 3 E 3 ILE A 90 GLY A 93 -1 N GLY A 93 O VAL A 108 SHEET 1 F 3 GLN A 137 VAL A 141 0 SHEET 2 F 3 VAL B 21 LYS B 26 1 O LEU B 22 N GLN A 137 SHEET 3 F 3 LEU B 66 GLN B 69 -1 O GLN B 69 N ARG B 23 SHEET 1 G 2 VAL B 52 VAL B 54 0 SHEET 2 G 2 PHE B 117 VAL B 119 -1 O VAL B 119 N VAL B 52 SHEET 1 H 3 LYS B 59 LYS B 63 0 SHEET 2 H 3 GLY B 106 ASN B 111 -1 O VAL B 107 N VAL B 62 SHEET 3 H 3 ILE B 90 GLY B 93 -1 N ASP B 91 O PHE B 110 CISPEP 1 GLY A 93 ALA A 94 0 27.34 CISPEP 2 GLY B 93 ALA B 94 0 29.42 CRYST1 42.799 42.799 169.384 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005904 0.00000 MASTER 458 0 0 0 26 0 0 6 0 0 0 26 END