HEADER REPLICATION 27-AUG-08 3EBE TITLE CRYSTAL STRUCTURE OF XENOPUS LAEVIS REPLICATION INITIATION FACTOR TITLE 2 MCM10 INTERNAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MCM10 HOMOLOG; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 230-427; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: MCM10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS OB-FOLD, ZINC FINGER, CCCH, DNA REPLICATION, METAL-BINDING, NUCLEUS, KEYWDS 2 ZINC-FINGER, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR E.M.WARREN,B.F.EICHMAN REVDAT 3 13-JUL-11 3EBE 1 VERSN REVDAT 2 23-DEC-08 3EBE 1 JRNL REVDAT 1 09-DEC-08 3EBE 0 JRNL AUTH E.M.WARREN,S.VAITHIYALINGAM,J.HAWORTH,B.GREER,A.K.BIELINSKY, JRNL AUTH 2 W.J.CHAZIN,B.F.EICHMAN JRNL TITL STRUCTURAL BASIS FOR DNA BINDING BY REPLICATION INITIATOR JRNL TITL 2 MCM10. JRNL REF STRUCTURE V. 16 1892 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 19081065 JRNL DOI 10.1016/J.STR.2008.10.005 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1481 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 48.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.73000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.305 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.508 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4199 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5644 ; 1.572 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 6.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;38.584 ;24.948 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 821 ;20.026 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;20.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3068 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1741 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2762 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 210 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.042 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2646 ; 0.781 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4126 ; 1.369 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1771 ; 1.814 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1518 ; 2.973 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 297 REMARK 3 RESIDUE RANGE : A 305 A 413 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6457 -43.0287 16.6471 REMARK 3 T TENSOR REMARK 3 T11: -0.0306 T22: -0.1008 REMARK 3 T33: -0.0838 T12: -0.0428 REMARK 3 T13: 0.0039 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.4409 L22: 1.5370 REMARK 3 L33: 1.5174 L12: -0.3943 REMARK 3 L13: 0.5345 L23: -0.2718 REMARK 3 S TENSOR REMARK 3 S11: -0.1063 S12: 0.1207 S13: -0.0345 REMARK 3 S21: -0.0068 S22: 0.0106 S23: -0.0127 REMARK 3 S31: -0.0821 S32: -0.1240 S33: 0.0957 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 235 B 296 REMARK 3 RESIDUE RANGE : B 305 B 408 REMARK 3 RESIDUE RANGE : B 501 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): -41.3084 -68.4055 6.8650 REMARK 3 T TENSOR REMARK 3 T11: -0.1254 T22: -0.1462 REMARK 3 T33: -0.1278 T12: 0.0069 REMARK 3 T13: 0.0060 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 6.1878 L22: 0.5035 REMARK 3 L33: 2.0713 L12: 0.3649 REMARK 3 L13: 1.2024 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.0152 S13: -0.1669 REMARK 3 S21: 0.0332 S22: 0.0949 S23: -0.0291 REMARK 3 S31: -0.0153 S32: 0.0441 S33: -0.1307 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 231 C 297 REMARK 3 RESIDUE RANGE : C 306 C 350 REMARK 3 RESIDUE RANGE : C 355 C 419 REMARK 3 RESIDUE RANGE : C 502 C 502 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7580 -20.1810 29.7032 REMARK 3 T TENSOR REMARK 3 T11: -0.1059 T22: -0.1059 REMARK 3 T33: -0.1372 T12: -0.0535 REMARK 3 T13: 0.0052 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.4701 L22: 2.3543 REMARK 3 L33: 2.7645 L12: -0.3639 REMARK 3 L13: -0.6477 L23: 1.0385 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.0179 S13: 0.0308 REMARK 3 S21: -0.0580 S22: -0.1613 S23: -0.0500 REMARK 3 S31: -0.0220 S32: -0.2309 S33: 0.1529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB049112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-07; 10-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 22-ID; 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.0388, 1.0311, 1.0370 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; MARMOSAIC REMARK 200 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29404 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42500 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS, KSCN, PH 8.00, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.20700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 228 REMARK 465 PRO A 229 REMARK 465 SER A 230 REMARK 465 PRO A 231 REMARK 465 VAL A 232 REMARK 465 GLY A 233 REMARK 465 GLN A 234 REMARK 465 GLN A 298 REMARK 465 SER A 299 REMARK 465 SER A 300 REMARK 465 ASN A 301 REMARK 465 ASN A 302 REMARK 465 GLY A 303 REMARK 465 LYS A 304 REMARK 465 VAL A 414 REMARK 465 SER A 415 REMARK 465 SER A 416 REMARK 465 LYS A 417 REMARK 465 ARG A 418 REMARK 465 ALA A 419 REMARK 465 ASP A 420 REMARK 465 LEU A 421 REMARK 465 GLN A 422 REMARK 465 SER A 423 REMARK 465 SER A 424 REMARK 465 TYR A 425 REMARK 465 SER A 426 REMARK 465 GLY A 427 REMARK 465 GLY B 228 REMARK 465 PRO B 229 REMARK 465 SER B 230 REMARK 465 PRO B 231 REMARK 465 VAL B 232 REMARK 465 GLY B 233 REMARK 465 GLN B 234 REMARK 465 PRO B 297 REMARK 465 GLN B 298 REMARK 465 SER B 299 REMARK 465 SER B 300 REMARK 465 ASN B 301 REMARK 465 ASN B 302 REMARK 465 GLY B 303 REMARK 465 LYS B 304 REMARK 465 ALA B 409 REMARK 465 GLN B 410 REMARK 465 TYR B 411 REMARK 465 LYS B 412 REMARK 465 LYS B 413 REMARK 465 VAL B 414 REMARK 465 SER B 415 REMARK 465 SER B 416 REMARK 465 LYS B 417 REMARK 465 ARG B 418 REMARK 465 ALA B 419 REMARK 465 ASP B 420 REMARK 465 LEU B 421 REMARK 465 GLN B 422 REMARK 465 SER B 423 REMARK 465 SER B 424 REMARK 465 TYR B 425 REMARK 465 SER B 426 REMARK 465 GLY B 427 REMARK 465 GLY C 228 REMARK 465 PRO C 229 REMARK 465 SER C 230 REMARK 465 GLN C 298 REMARK 465 SER C 299 REMARK 465 SER C 300 REMARK 465 ASN C 301 REMARK 465 ASN C 302 REMARK 465 GLY C 303 REMARK 465 LYS C 304 REMARK 465 THR C 305 REMARK 465 LYS C 351 REMARK 465 PRO C 352 REMARK 465 LYS C 353 REMARK 465 GLU C 354 REMARK 465 ASP C 420 REMARK 465 LEU C 421 REMARK 465 GLN C 422 REMARK 465 SER C 423 REMARK 465 SER C 424 REMARK 465 TYR C 425 REMARK 465 SER C 426 REMARK 465 GLY C 427 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 279 CD CE NZ REMARK 470 GLU A 281 OE1 OE2 REMARK 470 ASP A 374 CG OD1 OD2 REMARK 470 ASP B 374 CG OD1 OD2 REMARK 470 ASP C 318 CG OD1 OD2 REMARK 470 ARG C 384 CD NE CZ NH1 NH2 REMARK 470 LYS C 417 CG CD CE NZ REMARK 470 ARG C 418 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 268 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 354 113.94 -1.27 REMARK 500 GLN A 408 -34.91 -37.92 REMARK 500 THR B 356 -153.75 -144.56 REMARK 500 VAL C 232 -103.98 68.11 REMARK 500 THR C 356 149.07 -173.18 REMARK 500 ARG C 418 -103.94 -65.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 364 ASN A 365 -148.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR B 340 24.7 L L OUTSIDE RANGE REMARK 500 VAL C 232 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 391 SG 108.8 REMARK 620 3 CYS A 403 SG 114.0 111.9 REMARK 620 4 HIS A 406 ND1 110.9 108.9 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 381 SG REMARK 620 2 CYS B 391 SG 102.5 REMARK 620 3 CYS B 403 SG 116.0 116.2 REMARK 620 4 HIS B 406 ND1 110.5 103.4 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 381 SG REMARK 620 2 CYS C 391 SG 110.4 REMARK 620 3 CYS C 403 SG 116.3 113.6 REMARK 620 4 HIS C 406 ND1 112.8 102.1 100.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 502 DBREF 3EBE A 230 427 UNP Q5EAW4 MCM10_XENLA 230 427 DBREF 3EBE B 230 427 UNP Q5EAW4 MCM10_XENLA 230 427 DBREF 3EBE C 230 427 UNP Q5EAW4 MCM10_XENLA 230 427 SEQADV 3EBE GLY A 228 UNP Q5EAW4 EXPRESSION TAG SEQADV 3EBE PRO A 229 UNP Q5EAW4 EXPRESSION TAG SEQADV 3EBE GLY B 228 UNP Q5EAW4 EXPRESSION TAG SEQADV 3EBE PRO B 229 UNP Q5EAW4 EXPRESSION TAG SEQADV 3EBE GLY C 228 UNP Q5EAW4 EXPRESSION TAG SEQADV 3EBE PRO C 229 UNP Q5EAW4 EXPRESSION TAG SEQRES 1 A 200 GLY PRO SER PRO VAL GLY GLN GLN TYR HIS VAL GLU LYS SEQRES 2 A 200 PHE SER GLY LEU ARG ILE ARG LYS PRO ARG VAL SER SER SEQRES 3 A 200 SER GLU MET GLU ARG LYS MET ASN GLY ARG LYS LEU ILE SEQRES 4 A 200 ARG LEU ALA GLN LEU GLN ASN LYS ILE ALA THR GLU LYS SEQRES 5 A 200 LEU GLU GLU GLU ASP TRP VAL THR PHE GLY VAL ILE VAL SEQRES 6 A 200 LYS LYS ILE THR PRO GLN SER SER ASN ASN GLY LYS THR SEQRES 7 A 200 PHE SER ILE TRP ARG LEU ASN ASP LEU LYS ASP LEU ASP SEQRES 8 A 200 LYS TYR ILE SER LEU PHE LEU PHE GLY ASP VAL HIS LYS SEQRES 9 A 200 GLU HIS TRP LYS THR ASP GLN GLY THR VAL ILE GLY LEU SEQRES 10 A 200 LEU ASN ALA ASN PRO MET LYS PRO LYS GLU GLY THR ASP SEQRES 11 A 200 GLU VAL CYS LEU SER VAL ASP ASN PRO GLN LYS VAL LEU SEQRES 12 A 200 LEU MET GLY ASP ALA VAL ASP LEU GLY THR CYS LYS ALA SEQRES 13 A 200 ARG LYS LYS ASN GLY ASP PRO CYS THR GLN MET VAL ASN SEQRES 14 A 200 LEU ASN ASP CYS GLU TYR CYS GLN TYR HIS VAL GLN ALA SEQRES 15 A 200 GLN TYR LYS LYS VAL SER SER LYS ARG ALA ASP LEU GLN SEQRES 16 A 200 SER SER TYR SER GLY SEQRES 1 B 200 GLY PRO SER PRO VAL GLY GLN GLN TYR HIS VAL GLU LYS SEQRES 2 B 200 PHE SER GLY LEU ARG ILE ARG LYS PRO ARG VAL SER SER SEQRES 3 B 200 SER GLU MET GLU ARG LYS MET ASN GLY ARG LYS LEU ILE SEQRES 4 B 200 ARG LEU ALA GLN LEU GLN ASN LYS ILE ALA THR GLU LYS SEQRES 5 B 200 LEU GLU GLU GLU ASP TRP VAL THR PHE GLY VAL ILE VAL SEQRES 6 B 200 LYS LYS ILE THR PRO GLN SER SER ASN ASN GLY LYS THR SEQRES 7 B 200 PHE SER ILE TRP ARG LEU ASN ASP LEU LYS ASP LEU ASP SEQRES 8 B 200 LYS TYR ILE SER LEU PHE LEU PHE GLY ASP VAL HIS LYS SEQRES 9 B 200 GLU HIS TRP LYS THR ASP GLN GLY THR VAL ILE GLY LEU SEQRES 10 B 200 LEU ASN ALA ASN PRO MET LYS PRO LYS GLU GLY THR ASP SEQRES 11 B 200 GLU VAL CYS LEU SER VAL ASP ASN PRO GLN LYS VAL LEU SEQRES 12 B 200 LEU MET GLY ASP ALA VAL ASP LEU GLY THR CYS LYS ALA SEQRES 13 B 200 ARG LYS LYS ASN GLY ASP PRO CYS THR GLN MET VAL ASN SEQRES 14 B 200 LEU ASN ASP CYS GLU TYR CYS GLN TYR HIS VAL GLN ALA SEQRES 15 B 200 GLN TYR LYS LYS VAL SER SER LYS ARG ALA ASP LEU GLN SEQRES 16 B 200 SER SER TYR SER GLY SEQRES 1 C 200 GLY PRO SER PRO VAL GLY GLN GLN TYR HIS VAL GLU LYS SEQRES 2 C 200 PHE SER GLY LEU ARG ILE ARG LYS PRO ARG VAL SER SER SEQRES 3 C 200 SER GLU MET GLU ARG LYS MET ASN GLY ARG LYS LEU ILE SEQRES 4 C 200 ARG LEU ALA GLN LEU GLN ASN LYS ILE ALA THR GLU LYS SEQRES 5 C 200 LEU GLU GLU GLU ASP TRP VAL THR PHE GLY VAL ILE VAL SEQRES 6 C 200 LYS LYS ILE THR PRO GLN SER SER ASN ASN GLY LYS THR SEQRES 7 C 200 PHE SER ILE TRP ARG LEU ASN ASP LEU LYS ASP LEU ASP SEQRES 8 C 200 LYS TYR ILE SER LEU PHE LEU PHE GLY ASP VAL HIS LYS SEQRES 9 C 200 GLU HIS TRP LYS THR ASP GLN GLY THR VAL ILE GLY LEU SEQRES 10 C 200 LEU ASN ALA ASN PRO MET LYS PRO LYS GLU GLY THR ASP SEQRES 11 C 200 GLU VAL CYS LEU SER VAL ASP ASN PRO GLN LYS VAL LEU SEQRES 12 C 200 LEU MET GLY ASP ALA VAL ASP LEU GLY THR CYS LYS ALA SEQRES 13 C 200 ARG LYS LYS ASN GLY ASP PRO CYS THR GLN MET VAL ASN SEQRES 14 C 200 LEU ASN ASP CYS GLU TYR CYS GLN TYR HIS VAL GLN ALA SEQRES 15 C 200 GLN TYR LYS LYS VAL SER SER LYS ARG ALA ASP LEU GLN SEQRES 16 C 200 SER SER TYR SER GLY HET ZN A 500 1 HET ZN B 501 1 HET ZN C 502 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *149(H2 O) HELIX 1 1 SER A 252 ASN A 261 1 10 HELIX 2 2 ARG A 267 ALA A 269 5 3 HELIX 3 3 GLN A 270 THR A 277 1 8 HELIX 4 4 PHE A 326 TRP A 334 1 9 HELIX 5 5 ASN A 365 GLN A 367 5 3 HELIX 6 6 CYS A 403 LYS A 412 1 10 HELIX 7 7 SER B 252 ASN B 261 1 10 HELIX 8 8 ARG B 267 ALA B 269 5 3 HELIX 9 9 GLN B 270 THR B 277 1 8 HELIX 10 10 PHE B 326 TRP B 334 1 9 HELIX 11 11 ASN B 365 GLN B 367 5 3 HELIX 12 12 SER C 252 ASN C 261 1 10 HELIX 13 13 ARG C 267 ALA C 269 5 3 HELIX 14 14 GLN C 270 THR C 277 1 8 HELIX 15 15 PHE C 326 TRP C 334 1 9 HELIX 16 16 ASN C 365 GLN C 367 5 3 HELIX 17 17 HIS C 406 ARG C 418 1 13 SHEET 1 A 5 ILE A 246 ARG A 247 0 SHEET 2 A 5 VAL A 369 ALA A 375 -1 O ASP A 374 N ARG A 247 SHEET 3 A 5 THR A 340 LEU A 345 -1 N VAL A 341 O GLY A 373 SHEET 4 A 5 TRP A 285 ILE A 295 -1 N THR A 287 O LEU A 344 SHEET 5 A 5 LYS A 264 LEU A 265 1 N LYS A 264 O VAL A 286 SHEET 1 B 8 ILE A 246 ARG A 247 0 SHEET 2 B 8 VAL A 369 ALA A 375 -1 O ASP A 374 N ARG A 247 SHEET 3 B 8 THR A 340 LEU A 345 -1 N VAL A 341 O GLY A 373 SHEET 4 B 8 TRP A 285 ILE A 295 -1 N THR A 287 O LEU A 344 SHEET 5 B 8 SER A 307 ASN A 312 -1 O ASN A 312 N VAL A 290 SHEET 6 B 8 ILE A 321 LEU A 325 -1 O LEU A 325 N SER A 307 SHEET 7 B 8 VAL A 359 SER A 362 1 O VAL A 359 N SER A 322 SHEET 8 B 8 ASN A 348 PRO A 349 -1 N ASN A 348 O SER A 362 SHEET 1 C 2 LEU A 378 THR A 380 0 SHEET 2 C 2 MET A 394 ASN A 396 -1 O VAL A 395 N GLY A 379 SHEET 1 D 6 VAL B 238 GLU B 239 0 SHEET 2 D 6 LEU B 244 ARG B 247 -1 O LEU B 244 N GLU B 239 SHEET 3 D 6 VAL B 369 ALA B 375 -1 O ASP B 374 N ARG B 247 SHEET 4 D 6 THR B 340 LEU B 345 -1 N VAL B 341 O MET B 372 SHEET 5 D 6 TRP B 285 ILE B 295 -1 N GLY B 289 O ILE B 342 SHEET 6 D 6 LYS B 264 LEU B 265 1 N LYS B 264 O VAL B 286 SHEET 1 E 9 VAL B 238 GLU B 239 0 SHEET 2 E 9 LEU B 244 ARG B 247 -1 O LEU B 244 N GLU B 239 SHEET 3 E 9 VAL B 369 ALA B 375 -1 O ASP B 374 N ARG B 247 SHEET 4 E 9 THR B 340 LEU B 345 -1 N VAL B 341 O MET B 372 SHEET 5 E 9 TRP B 285 ILE B 295 -1 N GLY B 289 O ILE B 342 SHEET 6 E 9 SER B 307 ASN B 312 -1 O ASN B 312 N VAL B 290 SHEET 7 E 9 TYR B 320 LEU B 325 -1 O ILE B 321 N LEU B 311 SHEET 8 E 9 VAL B 359 VAL B 363 1 O LEU B 361 N PHE B 324 SHEET 9 E 9 ASN B 348 PRO B 349 -1 N ASN B 348 O SER B 362 SHEET 1 F 2 LEU B 378 THR B 380 0 SHEET 2 F 2 MET B 394 ASN B 396 -1 O VAL B 395 N GLY B 379 SHEET 1 G 5 ILE C 246 ARG C 247 0 SHEET 2 G 5 VAL C 369 ALA C 375 -1 O ASP C 374 N ARG C 247 SHEET 3 G 5 THR C 340 LEU C 345 -1 N VAL C 341 O GLY C 373 SHEET 4 G 5 TRP C 285 ILE C 295 -1 N THR C 287 O LEU C 344 SHEET 5 G 5 LYS C 264 LEU C 265 1 N LYS C 264 O VAL C 286 SHEET 1 H 8 ILE C 246 ARG C 247 0 SHEET 2 H 8 VAL C 369 ALA C 375 -1 O ASP C 374 N ARG C 247 SHEET 3 H 8 THR C 340 LEU C 345 -1 N VAL C 341 O GLY C 373 SHEET 4 H 8 TRP C 285 ILE C 295 -1 N THR C 287 O LEU C 344 SHEET 5 H 8 SER C 307 ASN C 312 -1 O ILE C 308 N ILE C 295 SHEET 6 H 8 ILE C 321 LEU C 325 -1 O LEU C 323 N TRP C 309 SHEET 7 H 8 VAL C 359 VAL C 363 1 O LEU C 361 N PHE C 324 SHEET 8 H 8 ASN C 348 PRO C 349 -1 N ASN C 348 O SER C 362 SHEET 1 I 2 LEU C 378 THR C 380 0 SHEET 2 I 2 MET C 394 ASN C 396 -1 O VAL C 395 N GLY C 379 LINK SG CYS A 381 ZN ZN A 500 1555 1555 2.27 LINK SG CYS A 391 ZN ZN A 500 1555 1555 2.34 LINK SG CYS A 403 ZN ZN A 500 1555 1555 2.24 LINK ND1 HIS A 406 ZN ZN A 500 1555 1555 2.01 LINK SG CYS B 381 ZN ZN B 501 1555 1555 2.37 LINK SG CYS B 391 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 403 ZN ZN B 501 1555 1555 2.37 LINK ND1 HIS B 406 ZN ZN B 501 1555 1555 2.03 LINK SG CYS C 381 ZN ZN C 502 1555 1555 2.33 LINK SG CYS C 391 ZN ZN C 502 1555 1555 2.39 LINK SG CYS C 403 ZN ZN C 502 1555 1555 2.29 LINK ND1 HIS C 406 ZN ZN C 502 1555 1555 2.02 CISPEP 1 THR B 356 ASP B 357 0 3.71 CISPEP 2 PRO C 231 VAL C 232 0 -3.67 CISPEP 3 THR C 296 PRO C 297 0 -0.93 SITE 1 AC1 4 CYS A 381 CYS A 391 CYS A 403 HIS A 406 SITE 1 AC2 4 CYS B 381 CYS B 391 CYS B 403 HIS B 406 SITE 1 AC3 4 CYS C 381 CYS C 391 CYS C 403 HIS C 406 CRYST1 54.565 94.414 69.775 90.00 112.79 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018327 0.000000 0.007701 0.00000 SCALE2 0.000000 0.010592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015546 0.00000 MASTER 519 0 3 17 47 0 3 6 0 0 0 48 END