HEADER TRANSCRIPTION REGULATOR 06-JUN-08 3DDV TITLE THE CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR (GNTR FAMILY) TITLE 2 FROM ENTEROCOCCUS FAECALIS V583 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR (GNTR FAMILY); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 STRAIN: V583; SOURCE 4 GENE: GI:29343357; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS TRANSCRIPTIONAL REGULATOR (GNTR FAMILY, STRUCTURE GENOMICS, PSI2, KEYWDS 2 MCSG, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.ZHOU,M.BARGASSA,Z.OTWINOWSKI,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-OCT-17 3DDV 1 REMARK REVDAT 3 13-JUL-11 3DDV 1 VERSN REVDAT 2 24-FEB-09 3DDV 1 VERSN REVDAT 1 07-OCT-08 3DDV 0 JRNL AUTH R.ZHANG,M.ZHOU,M.BARGASSA,Z.OTWINOWSKI,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR (GNTR JRNL TITL 2 FAMILY) FROM ENTEROCOCCUS FAECALIS V583 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 28847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 52.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4273 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3013 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5759 ; 2.008 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7280 ; 1.021 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 8.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;37.183 ;23.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 756 ;19.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;20.320 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4730 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 928 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 841 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3221 ; 0.212 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2112 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2563 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.056 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.386 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3241 ; 1.165 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1034 ; 0.156 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4177 ; 1.429 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1968 ; 2.063 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1582 ; 3.064 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 145 REMARK 3 RESIDUE RANGE : B 7 B 145 REMARK 3 RESIDUE RANGE : C 5 C 145 REMARK 3 RESIDUE RANGE : D 7 D 144 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5490 28.1110 36.1450 REMARK 3 T TENSOR REMARK 3 T11: -0.2257 T22: 0.3714 REMARK 3 T33: -0.0185 T12: 0.0054 REMARK 3 T13: -0.0203 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.2291 L22: 0.7648 REMARK 3 L33: 2.1234 L12: -0.1819 REMARK 3 L13: 0.6752 L23: -0.2487 REMARK 3 S TENSOR REMARK 3 S11: 0.1845 S12: 0.0489 S13: -0.0817 REMARK 3 S21: -0.0133 S22: -0.0626 S23: 0.0509 REMARK 3 S31: 0.1112 S32: -0.0193 S33: -0.1218 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000047915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 80.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 2M AMMONIUM SULFATE, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 160.03933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.01967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.01967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 160.03933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. THE DEPOSITED MOLA/MOLB AND REMARK 300 MOLC/MOLD ARE TWO DIMERS IN THE ASYMMTRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -43.07650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.61069 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.01967 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLN A 2 REMARK 465 SER A 61 REMARK 465 GLN A 62 REMARK 465 TYR A 63 REMARK 465 GLY A 64 REMARK 465 LYS A 65 REMARK 465 SER A 66 REMARK 465 GLU A 67 REMARK 465 ILE A 68 REMARK 465 THR A 69 REMARK 465 ASN A 70 REMARK 465 SER A 71 REMARK 465 PHE A 72 REMARK 465 TYR A 73 REMARK 465 LYS A 74 REMARK 465 THR A 75 REMARK 465 LEU A 76 REMARK 465 GLU A 77 REMARK 465 ALA A 78 REMARK 465 LYS A 79 REMARK 465 SER A 80 REMARK 465 GLY A 81 REMARK 465 HIS A 82 REMARK 465 SER B 1 REMARK 465 GLN B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 5 REMARK 465 PRO B 6 REMARK 465 SER C 1 REMARK 465 SER C 61 REMARK 465 GLN C 62 REMARK 465 TYR C 63 REMARK 465 GLY C 64 REMARK 465 LYS C 65 REMARK 465 SER C 66 REMARK 465 GLU C 67 REMARK 465 ILE C 68 REMARK 465 THR C 69 REMARK 465 ASN C 70 REMARK 465 SER C 71 REMARK 465 PHE C 72 REMARK 465 TYR C 73 REMARK 465 LYS C 74 REMARK 465 THR C 75 REMARK 465 LEU C 76 REMARK 465 GLU C 77 REMARK 465 ALA C 78 REMARK 465 LYS C 79 REMARK 465 SER C 80 REMARK 465 GLY C 81 REMARK 465 HIS C 82 REMARK 465 LYS C 83 REMARK 465 ILE C 84 REMARK 465 SER D 1 REMARK 465 GLN D 2 REMARK 465 ASN D 3 REMARK 465 ARG D 4 REMARK 465 VAL D 5 REMARK 465 PRO D 6 REMARK 465 LYS D 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 90 OE1 GLU B 140 2.16 REMARK 500 O LEU B 76 OG SER B 80 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 108 CG ARG B 108 CD 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 131 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 84 -157.77 -107.63 REMARK 500 SER A 137 84.16 59.20 REMARK 500 ARG A 138 -42.12 130.13 REMARK 500 TYR B 13 109.25 -169.56 REMARK 500 GLN B 27 72.27 56.52 REMARK 500 GLU B 31 -17.29 81.21 REMARK 500 ASP B 45 11.77 56.88 REMARK 500 SER B 61 -39.80 -37.93 REMARK 500 ASP C 45 -4.00 69.16 REMARK 500 ILE C 106 -168.93 -123.43 REMARK 500 ASN C 123 -19.32 -44.51 REMARK 500 ALA C 135 62.78 -66.77 REMARK 500 SER C 137 63.61 65.20 REMARK 500 ARG C 138 -50.49 140.28 REMARK 500 TYR D 13 92.22 -170.74 REMARK 500 ASP D 45 9.77 59.73 REMARK 500 VAL D 60 -3.13 -141.15 REMARK 500 SER D 71 48.89 -149.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85201 RELATED DB: TARGETDB DBREF 3DDV A 1 145 PDB 3DDV 3DDV 1 145 DBREF 3DDV B 1 145 PDB 3DDV 3DDV 1 145 DBREF 3DDV C 1 145 PDB 3DDV 3DDV 1 145 DBREF 3DDV D 1 145 PDB 3DDV 3DDV 1 145 SEQRES 1 A 145 SER GLN ASN ARG VAL PRO SER SER ARG THR VAL SER TYR SEQRES 2 A 145 PHE VAL ALA LYS PRO SER SER SER GLU MET GLU LYS LEU SEQRES 3 A 145 GLN LEU GLY PRO GLU ASP SER ILE LEU ARG MET GLU ARG SEQRES 4 A 145 ILE ARG PHE ALA ASP ASP ILE PRO ILE CYS PHE GLU VAL SEQRES 5 A 145 ALA SER ILE PRO TYR SER LEU VAL SER GLN TYR GLY LYS SEQRES 6 A 145 SER GLU ILE THR ASN SER PHE TYR LYS THR LEU GLU ALA SEQRES 7 A 145 LYS SER GLY HIS LYS ILE GLY HIS SER ASN GLN THR ILE SEQRES 8 A 145 SER ALA VAL GLN ALA SER GLU GLN ILE ALA GLU TYR LEU SEQRES 9 A 145 GLU ILE LYS ARG GLY ASP ALA ILE LEU ARG VAL ARG GLN SEQRES 10 A 145 VAL SER TYR PHE GLU ASN GLY LEU PRO PHE GLU TYR VAL SEQRES 11 A 145 ARG THR GLN TYR ALA GLY SER ARG PHE GLU PHE TYR LEU SEQRES 12 A 145 GLU LYS SEQRES 1 B 145 SER GLN ASN ARG VAL PRO SER SER ARG THR VAL SER TYR SEQRES 2 B 145 PHE VAL ALA LYS PRO SER SER SER GLU MET GLU LYS LEU SEQRES 3 B 145 GLN LEU GLY PRO GLU ASP SER ILE LEU ARG MET GLU ARG SEQRES 4 B 145 ILE ARG PHE ALA ASP ASP ILE PRO ILE CYS PHE GLU VAL SEQRES 5 B 145 ALA SER ILE PRO TYR SER LEU VAL SER GLN TYR GLY LYS SEQRES 6 B 145 SER GLU ILE THR ASN SER PHE TYR LYS THR LEU GLU ALA SEQRES 7 B 145 LYS SER GLY HIS LYS ILE GLY HIS SER ASN GLN THR ILE SEQRES 8 B 145 SER ALA VAL GLN ALA SER GLU GLN ILE ALA GLU TYR LEU SEQRES 9 B 145 GLU ILE LYS ARG GLY ASP ALA ILE LEU ARG VAL ARG GLN SEQRES 10 B 145 VAL SER TYR PHE GLU ASN GLY LEU PRO PHE GLU TYR VAL SEQRES 11 B 145 ARG THR GLN TYR ALA GLY SER ARG PHE GLU PHE TYR LEU SEQRES 12 B 145 GLU LYS SEQRES 1 C 145 SER GLN ASN ARG VAL PRO SER SER ARG THR VAL SER TYR SEQRES 2 C 145 PHE VAL ALA LYS PRO SER SER SER GLU MET GLU LYS LEU SEQRES 3 C 145 GLN LEU GLY PRO GLU ASP SER ILE LEU ARG MET GLU ARG SEQRES 4 C 145 ILE ARG PHE ALA ASP ASP ILE PRO ILE CYS PHE GLU VAL SEQRES 5 C 145 ALA SER ILE PRO TYR SER LEU VAL SER GLN TYR GLY LYS SEQRES 6 C 145 SER GLU ILE THR ASN SER PHE TYR LYS THR LEU GLU ALA SEQRES 7 C 145 LYS SER GLY HIS LYS ILE GLY HIS SER ASN GLN THR ILE SEQRES 8 C 145 SER ALA VAL GLN ALA SER GLU GLN ILE ALA GLU TYR LEU SEQRES 9 C 145 GLU ILE LYS ARG GLY ASP ALA ILE LEU ARG VAL ARG GLN SEQRES 10 C 145 VAL SER TYR PHE GLU ASN GLY LEU PRO PHE GLU TYR VAL SEQRES 11 C 145 ARG THR GLN TYR ALA GLY SER ARG PHE GLU PHE TYR LEU SEQRES 12 C 145 GLU LYS SEQRES 1 D 145 SER GLN ASN ARG VAL PRO SER SER ARG THR VAL SER TYR SEQRES 2 D 145 PHE VAL ALA LYS PRO SER SER SER GLU MET GLU LYS LEU SEQRES 3 D 145 GLN LEU GLY PRO GLU ASP SER ILE LEU ARG MET GLU ARG SEQRES 4 D 145 ILE ARG PHE ALA ASP ASP ILE PRO ILE CYS PHE GLU VAL SEQRES 5 D 145 ALA SER ILE PRO TYR SER LEU VAL SER GLN TYR GLY LYS SEQRES 6 D 145 SER GLU ILE THR ASN SER PHE TYR LYS THR LEU GLU ALA SEQRES 7 D 145 LYS SER GLY HIS LYS ILE GLY HIS SER ASN GLN THR ILE SEQRES 8 D 145 SER ALA VAL GLN ALA SER GLU GLN ILE ALA GLU TYR LEU SEQRES 9 D 145 GLU ILE LYS ARG GLY ASP ALA ILE LEU ARG VAL ARG GLN SEQRES 10 D 145 VAL SER TYR PHE GLU ASN GLY LEU PRO PHE GLU TYR VAL SEQRES 11 D 145 ARG THR GLN TYR ALA GLY SER ARG PHE GLU PHE TYR LEU SEQRES 12 D 145 GLU LYS HET MG A 146 1 HET MG B 146 1 HET MG D 146 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 3(MG 2+) FORMUL 8 HOH *64(H2 O) HELIX 1 1 SER A 19 GLN A 27 1 9 HELIX 2 2 SER A 58 VAL A 60 5 3 HELIX 3 3 SER A 97 LEU A 104 1 8 HELIX 4 4 SER B 19 GLN B 27 1 9 HELIX 5 5 SER B 58 VAL B 60 5 3 HELIX 6 6 GLY B 64 SER B 71 1 8 HELIX 7 7 SER B 71 GLY B 81 1 11 HELIX 8 8 SER B 97 GLU B 105 1 9 HELIX 9 9 SER B 137 PHE B 139 5 3 HELIX 10 10 SER C 19 GLN C 27 1 9 HELIX 11 11 SER C 58 VAL C 60 5 3 HELIX 12 12 SER C 97 GLU C 105 1 9 HELIX 13 13 SER D 19 GLN D 27 1 9 HELIX 14 14 SER D 58 VAL D 60 5 3 HELIX 15 15 GLY D 64 SER D 71 1 8 HELIX 16 16 SER D 71 GLY D 81 1 11 HELIX 17 17 SER D 97 GLU D 105 1 9 HELIX 18 18 SER D 137 PHE D 139 5 3 SHEET 1 A 7 PRO A 6 ALA A 16 0 SHEET 2 A 7 ILE A 34 ALA A 43 -1 O GLU A 38 N VAL A 11 SHEET 3 A 7 ILE A 46 PRO A 56 -1 O ILE A 55 N LEU A 35 SHEET 4 A 7 PRO A 126 TYR A 134 -1 O GLN A 133 N PHE A 50 SHEET 5 A 7 ALA A 111 TYR A 120 -1 N GLN A 117 O VAL A 130 SHEET 6 A 7 SER A 87 GLN A 95 -1 N VAL A 94 O ILE A 112 SHEET 7 A 7 PHE B 141 TYR B 142 -1 O PHE B 141 N ILE A 91 SHEET 1 B 7 PHE A 141 GLU A 144 0 SHEET 2 B 7 ILE B 84 GLN B 95 -1 O ILE B 91 N PHE A 141 SHEET 3 B 7 ALA B 111 PHE B 121 -1 O ARG B 114 N SER B 92 SHEET 4 B 7 PRO B 126 ALA B 135 -1 O THR B 132 N VAL B 115 SHEET 5 B 7 ILE B 46 PRO B 56 -1 N VAL B 52 O ARG B 131 SHEET 6 B 7 ILE B 34 ALA B 43 -1 N MET B 37 O ALA B 53 SHEET 7 B 7 SER B 8 ALA B 16 -1 N ARG B 9 O ILE B 40 SHEET 1 C 7 PRO C 6 ALA C 16 0 SHEET 2 C 7 ILE C 34 ALA C 43 -1 O PHE C 42 N SER C 7 SHEET 3 C 7 ILE C 46 PRO C 56 -1 O ILE C 55 N LEU C 35 SHEET 4 C 7 PRO C 126 TYR C 134 -1 O GLN C 133 N PHE C 50 SHEET 5 C 7 ALA C 111 TYR C 120 -1 N GLN C 117 O VAL C 130 SHEET 6 C 7 SER C 87 GLN C 95 -1 N SER C 92 O ARG C 114 SHEET 7 C 7 PHE D 141 TYR D 142 -1 O PHE D 141 N ILE C 91 SHEET 1 D 7 GLU C 140 LYS C 145 0 SHEET 2 D 7 ILE D 84 GLN D 95 -1 O GLN D 89 N LEU C 143 SHEET 3 D 7 ALA D 111 PHE D 121 -1 O ARG D 114 N SER D 92 SHEET 4 D 7 PRO D 126 ALA D 135 -1 O VAL D 130 N GLN D 117 SHEET 5 D 7 ILE D 46 PRO D 56 -1 N PHE D 50 O GLN D 133 SHEET 6 D 7 ILE D 34 ALA D 43 -1 N ARG D 41 O ILE D 48 SHEET 7 D 7 SER D 8 ALA D 16 -1 N ALA D 16 O ILE D 34 CISPEP 1 GLY A 85 HIS A 86 0 10.95 CISPEP 2 GLY A 136 SER A 137 0 21.64 CISPEP 3 GLY C 136 SER C 137 0 13.33 SITE 1 AC1 3 SER A 21 TYR A 129 ARG A 131 SITE 1 AC2 3 SER B 21 TYR B 129 ARG B 131 SITE 1 AC3 1 TYR D 129 CRYST1 86.153 86.153 240.059 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011607 0.006701 0.000000 0.00000 SCALE2 0.000000 0.013403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004166 0.00000 MASTER 466 0 3 18 28 0 3 6 0 0 0 48 END