HEADER STRUCTURAL PROTEIN/STRUCTURAL PROTEIN RE30-MAY-08 3DAW TITLE STRUCTURE OF THE ACTIN-DEPOLYMERIZING FACTOR HOMOLOGY TITLE 2 DOMAIN IN COMPLEX WITH ACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TWINFILIN-1; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: C-TERMINAL DOMAIN, ADF-H 2, UNP RESIDUES 167-322; COMPND 9 SYNONYM: PROTEIN A6; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: EUROPEAN RABBIT,JAPANESE WHITE RABBIT, SOURCE 4 DOMESTIC RABBIT,RABBITS; SOURCE 5 ORGANISM_TAXID: 9986; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 GENE: TWF1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PHAT2 KEYWDS ACTIN DEPOLYMERISATION, ACTIN BINDING PROTEINS, KEYWDS 2 CYTOSKELETON, STRUCTURAL PROTEIN/CONTRACTILE PROTEIN KEYWDS 3 COMPLEX, STRUCTURAL PROTEIN/STRUCTURAL PROTEIN REGULATOR KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.O.PAAVILAINEN,E.OKSANEN,A.GOLDMAN,P.LAPPALAINEN REVDAT 2 24-FEB-09 3DAW 1 VERSN REVDAT 1 29-JUL-08 3DAW 0 JRNL AUTH V.O.PAAVILAINEN,E.OKSANEN,A.GOLDMAN,P.LAPPALAINEN JRNL TITL STRUCTURE OF THE ACTIN-DEPOLYMERIZING FACTOR JRNL TITL 2 HOMOLOGY DOMAIN IN COMPLEX WITH ACTIN JRNL REF J.CELL BIOL. V. 182 51 2008 JRNL REFN ISSN 0021-9525 JRNL PMID 18625842 JRNL DOI 10.1083/JCB.200803100 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.563 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.327 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.415 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4175 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2838 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5659 ; 1.534 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6928 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 9.636 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;36.478 ;24.096 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;19.143 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.187 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4590 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 827 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 985 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3044 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1995 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2257 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 138 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.133 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2652 ; 0.556 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1029 ; 0.083 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4137 ; 0.962 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1769 ; 1.214 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1522 ; 1.851 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3DAW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB047809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072250 REMARK 200 MONOCHROMATOR : SI (1,1,1) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26755 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : 0.13100 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : 0.55200 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2HD7, 2A42 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM TRIS PH 7.5, 50MM NACL, 0.2MM REMARK 280 ATP, 0.2MM DTT, 0.2MM CACL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.44000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.44000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 CYS A 0 REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 MET B 159 REMARK 465 SER B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 SER B 167 REMARK 465 MET B 168 REMARK 465 ASP B 169 REMARK 465 THR B 170 REMARK 465 LYS B 171 REMARK 465 HIS B 172 REMARK 465 GLN B 173 REMARK 465 THR B 174 REMARK 465 LEU B 175 REMARK 465 GLN B 316 REMARK 465 HIS B 317 REMARK 465 ALA B 318 REMARK 465 HIS B 319 REMARK 465 LYS B 320 REMARK 465 GLN B 321 REMARK 465 SER B 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 118 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 10 CB CYS A 10 SG -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 368 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 SER A 368 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 49 36.01 -99.53 REMARK 500 ALA A 181 -156.15 -157.73 REMARK 500 SER A 234 42.31 -98.99 REMARK 500 LEU A 236 44.31 -107.67 REMARK 500 MET A 269 121.18 -36.06 REMARK 500 SER A 271 149.15 -176.82 REMARK 500 ASP A 286 140.28 -38.81 REMARK 500 THR A 324 43.48 -94.27 REMARK 500 ALA A 365 -157.88 -138.92 REMARK 500 SER A 368 74.02 -161.43 REMARK 500 ILE A 369 -56.85 15.23 REMARK 500 GLU B 246 70.67 23.90 REMARK 500 ASP B 290 76.42 -119.06 REMARK 500 PRO B 314 -177.22 -69.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 4 THR A 5 148.36 REMARK 500 HIS A 40 GLN A 41 -145.54 REMARK 500 VAL A 45 GLY A 46 -30.03 REMARK 500 VAL A 201 THR A 202 -85.18 REMARK 500 PRO A 367 SER A 368 87.49 REMARK 500 SER A 368 ILE A 369 75.01 REMARK 500 GLY B 300 ASP B 301 142.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 376 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 377 O2G REMARK 620 2 ATP A 377 O2B 78.1 REMARK 620 3 HOH A 402 O 77.1 95.4 REMARK 620 4 HOH A 384 O 103.3 171.6 93.0 REMARK 620 5 HOH A 415 O 149.1 75.5 120.8 100.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 377 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A42 RELATED DB: PDB REMARK 900 ACTIN-DNASE COMPLEX REMARK 900 RELATED ID: 2HD7 RELATED DB: PDB REMARK 900 TWINFILIN C-TERMINAL DOMAIN DBREF 3DAW A -1 375 UNP P68135 ACTS_RABIT 1 377 DBREF 3DAW B 167 322 UNP Q91YR1 TWF1_MOUSE 167 322 SEQADV 3DAW MET B 159 UNP Q91YR1 EXPRESSION TAG SEQADV 3DAW SER B 160 UNP Q91YR1 EXPRESSION TAG SEQADV 3DAW HIS B 161 UNP Q91YR1 EXPRESSION TAG SEQADV 3DAW HIS B 162 UNP Q91YR1 EXPRESSION TAG SEQADV 3DAW HIS B 163 UNP Q91YR1 EXPRESSION TAG SEQADV 3DAW HIS B 164 UNP Q91YR1 EXPRESSION TAG SEQADV 3DAW HIS B 165 UNP Q91YR1 EXPRESSION TAG SEQADV 3DAW HIS B 166 UNP Q91YR1 EXPRESSION TAG SEQADV 3DAW MET B 168 UNP Q91YR1 VAL 168 ENGINEERED SEQRES 1 A 377 MET CYS ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP SEQRES 2 A 377 ASN GLY SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP SEQRES 3 A 377 ASP ALA PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG SEQRES 4 A 377 PRO ARG HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS SEQRES 5 A 377 ASP SER TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY SEQRES 6 A 377 ILE LEU THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE SEQRES 7 A 377 THR ASN TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR SEQRES 8 A 377 PHE TYR ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO SEQRES 9 A 377 THR LEU LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN SEQRES 10 A 377 ARG GLU LYS MET THR GLN ILE MET PHE GLU THR PHE ASN SEQRES 11 A 377 VAL PRO ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER SEQRES 12 A 377 LEU TYR ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SEQRES 13 A 377 SER GLY ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU SEQRES 14 A 377 GLY TYR ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU SEQRES 15 A 377 ALA GLY ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU SEQRES 16 A 377 THR GLU ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG SEQRES 17 A 377 GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL SEQRES 18 A 377 ALA LEU ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SEQRES 19 A 377 SER SER SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY SEQRES 20 A 377 GLN VAL ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO SEQRES 21 A 377 GLU THR LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER SEQRES 22 A 377 ALA GLY ILE HIS GLU THR THR TYR ASN SER ILE MET LYS SEQRES 23 A 377 CYS ASP ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN SEQRES 24 A 377 VAL MET SER GLY GLY THR THR MET TYR PRO GLY ILE ALA SEQRES 25 A 377 ASP ARG MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER SEQRES 26 A 377 THR MET LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS SEQRES 27 A 377 TYR SER VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SEQRES 28 A 377 SER THR PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR SEQRES 29 A 377 ASP GLU ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 B 164 MET SER HIS HIS HIS HIS HIS HIS SER MET ASP THR LYS SEQRES 2 B 164 HIS GLN THR LEU GLN GLY VAL ALA PHE PRO ILE SER ARG SEQRES 3 B 164 ASP ALA PHE GLN ALA LEU GLU LYS LEU SER LYS LYS GLN SEQRES 4 B 164 LEU ASN TYR VAL GLN LEU GLU ILE ASP ILE LYS ASN GLU SEQRES 5 B 164 THR ILE ILE LEU ALA ASN THR GLU ASN THR GLU LEU ARG SEQRES 6 B 164 ASP LEU PRO LYS ARG ILE PRO LYS ASP SER ALA ARG TYR SEQRES 7 B 164 HIS PHE PHE LEU TYR LYS HIS SER HIS GLU GLY ASP TYR SEQRES 8 B 164 LEU GLU SER VAL VAL PHE ILE TYR SER MET PRO GLY TYR SEQRES 9 B 164 THR CYS SER ILE ARG GLU ARG MET LEU TYR SER SER CYS SEQRES 10 B 164 LYS SER PRO LEU LEU GLU ILE VAL GLU ARG GLN LEU GLN SEQRES 11 B 164 MET ASP VAL ILE ARG LYS ILE GLU ILE ASP ASN GLY ASP SEQRES 12 B 164 GLU LEU THR ALA ASP PHE LEU TYR ASP GLU VAL HIS PRO SEQRES 13 B 164 LYS GLN HIS ALA HIS LYS GLN SER HET CA A 376 1 HET ATP A 377 31 HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 CA CA 2+ FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 HOH *123(H2 O) HELIX 1 1 GLY A 55 LYS A 61 1 7 HELIX 2 2 ASN A 78 ASN A 92 1 15 HELIX 3 3 ALA A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 THR A 126 1 15 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 PRO A 172 ILE A 175 5 4 HELIX 7 7 ALA A 181 ARG A 196 1 16 HELIX 8 8 THR A 202 CYS A 217 1 16 HELIX 9 9 ASP A 222 SER A 232 1 11 HELIX 10 10 ASN A 252 GLN A 263 1 12 HELIX 11 11 PRO A 264 GLY A 268 5 5 HELIX 12 12 GLY A 273 LYS A 284 1 12 HELIX 13 13 ILE A 289 ASN A 296 1 8 HELIX 14 14 GLY A 301 MET A 305 5 5 HELIX 15 15 GLY A 308 ALA A 321 1 14 HELIX 16 16 TYR A 337 SER A 348 1 12 HELIX 17 17 LEU A 349 GLN A 353 5 5 HELIX 18 18 LYS A 359 GLU A 364 1 6 HELIX 19 19 ILE A 369 PHE A 375 1 7 HELIX 20 20 SER B 183 LYS B 195 1 13 HELIX 21 21 GLU B 221 ILE B 229 5 9 HELIX 22 22 SER B 265 CYS B 275 1 11 HELIX 23 23 CYS B 275 GLN B 288 1 14 HELIX 24 24 THR B 304 HIS B 313 1 10 SHEET 1 A 6 ALA A 29 PRO A 32 0 SHEET 2 A 6 LEU A 16 PHE A 21 -1 N VAL A 17 O PHE A 31 SHEET 3 A 6 LEU A 8 ASN A 12 -1 N ASP A 11 O LYS A 18 SHEET 4 A 6 THR A 103 GLU A 107 1 O LEU A 104 N LEU A 8 SHEET 5 A 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 A 6 ILE A 357 THR A 358 -1 O ILE A 357 N MET A 132 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 PRO A 38 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 LEU A 65 LYS A 68 -1 O THR A 66 N ARG A 37 SHEET 1 C 2 ILE A 71 GLU A 72 0 SHEET 2 C 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 D 3 TYR A 169 ALA A 170 0 SHEET 2 D 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 D 3 MET A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 E 5 TYR A 169 ALA A 170 0 SHEET 2 E 5 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 5 GLY A 150 SER A 155 -1 N ASP A 154 O HIS A 161 SHEET 4 E 5 ASN A 297 SER A 300 1 O VAL A 298 N LEU A 153 SHEET 5 E 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 F 2 LYS A 238 GLU A 241 0 SHEET 2 F 2 VAL A 247 ILE A 250 -1 O ILE A 248 N TYR A 240 SHEET 1 G 5 THR B 211 ASN B 216 0 SHEET 2 G 5 TYR B 200 ASP B 206 -1 N GLU B 204 O ILE B 213 SHEET 3 G 5 ARG B 235 HIS B 245 -1 O PHE B 238 N VAL B 201 SHEET 4 G 5 ASP B 248 SER B 258 -1 O LEU B 250 N HIS B 243 SHEET 5 G 5 VAL B 291 ILE B 297 1 O ILE B 295 N TYR B 257 LINK CA CA A 376 O2G ATP A 377 1555 1555 2.36 LINK CA CA A 376 O2B ATP A 377 1555 1555 2.42 LINK CA CA A 376 O HOH A 402 1555 1555 2.74 LINK CA CA A 376 O HOH A 384 1555 1555 2.37 LINK CA CA A 376 O HOH A 415 1555 1555 2.20 CISPEP 1 GLU A 364 ALA A 365 0 -14.16 CISPEP 2 ALA A 365 GLY A 366 0 -23.47 CISPEP 3 GLN B 176 GLY B 177 0 -14.80 SITE 1 AC2 17 GLY A 13 SER A 14 GLY A 15 LEU A 16 SITE 2 AC2 17 LYS A 18 GLY A 156 ASP A 157 GLY A 158 SITE 3 AC2 17 GLY A 182 LYS A 213 GLU A 214 GLY A 301 SITE 4 AC2 17 GLY A 302 THR A 303 MET A 305 TYR A 306 SITE 5 AC2 17 LYS A 336 CRYST1 52.780 72.990 168.880 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005921 0.00000 MASTER 392 0 2 24 26 0 5 6 0 0 0 42 END