HEADER GENE REGULATION 16-MAY-08 3D5P TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLUCAN SYNTHESIS REGULATOR OF TITLE 2 SMI1/KNR4 FAMILY (BF1740) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.45 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLUCAN SYNTHESIS REGULATOR OF SMI1/KNR4 FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS NCTC 9343; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 GENE: YP_211376.1, BF1740; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE GLUCAN SYNTHESIS REGULATOR OF SMI1/KNR4 FAMILY, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JUL-19 3D5P 1 REMARK LINK REVDAT 5 25-OCT-17 3D5P 1 REMARK REVDAT 4 13-JUL-11 3D5P 1 VERSN REVDAT 3 28-JUL-10 3D5P 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3D5P 1 VERSN REVDAT 1 15-JUL-08 3D5P 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GLUCAN SYNTHESIS REGULATOR OF JRNL TITL 2 SMI1/KNR4 FAMILY (YP_211376.1) FROM BACTEROIDES FRAGILIS JRNL TITL 3 NCTC 9343 AT 1.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 52409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2474 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1618 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3374 ; 1.677 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3974 ; 1.418 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 5.803 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.071 ;25.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;14.591 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;20.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2880 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1488 ; 1.369 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 612 ; 0.375 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2403 ; 2.250 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 986 ; 1.847 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 971 ; 2.718 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0064 42.3661 12.3956 REMARK 3 T TENSOR REMARK 3 T11: -0.0115 T22: -0.0176 REMARK 3 T33: -0.0253 T12: 0.0177 REMARK 3 T13: -0.0268 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.4467 L22: 1.2399 REMARK 3 L33: 0.4093 L12: -0.1259 REMARK 3 L13: -0.0366 L23: 0.2917 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0166 S13: 0.0030 REMARK 3 S21: -0.1295 S22: -0.0632 S23: 0.1283 REMARK 3 S31: -0.0932 S32: -0.0944 S33: 0.0777 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0730 16.9378 9.1665 REMARK 3 T TENSOR REMARK 3 T11: -0.0218 T22: -0.0073 REMARK 3 T33: -0.0145 T12: -0.0041 REMARK 3 T13: -0.0033 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.3904 L22: 0.5432 REMARK 3 L33: 0.3584 L12: 0.0578 REMARK 3 L13: 0.0826 L23: 0.0951 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0028 S13: -0.0480 REMARK 3 S21: 0.0380 S22: -0.0126 S23: 0.0377 REMARK 3 S31: 0.0088 S32: -0.0407 S33: 0.0116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 4. ACETATE (ACT) IONS, GLYCEROL (GOL) REMARK 3 AND PEG4000 FRAGMENT (PEG) MOLECULES FROM CRYSTALLIZATION REMARK 3 WERE MODELED. REMARK 4 REMARK 4 3D5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97916,0.97852 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52450 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.683 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : 0.55800 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0000% GLYCEROL, 0.1700M NH4OAC, REMARK 280 25.5000% PEG-4000, 0.1M CITRATE PH 5.6, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.52900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.54650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.75400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.54650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.52900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.75400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS AND ANALYTICAL REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A DIMER AS REMARK 300 A SIGNIFICANT OLIGOMERIC STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 133 REMARK 465 GLN A 134 REMARK 465 ASN A 135 REMARK 465 VAL A 136 REMARK 465 ALA A 137 REMARK 465 ASN A 138 REMARK 465 ASN A 139 REMARK 465 ASN A 140 REMARK 465 LEU A 141 REMARK 465 THR A 142 REMARK 465 THR A 143 REMARK 465 LEU B 133 REMARK 465 GLN B 134 REMARK 465 ASN B 135 REMARK 465 VAL B 136 REMARK 465 ALA B 137 REMARK 465 ASN B 138 REMARK 465 ASN B 139 REMARK 465 ASN B 140 REMARK 465 LEU B 141 REMARK 465 THR B 142 REMARK 465 THR B 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CE NZ REMARK 470 LYS A 32 CD CE NZ REMARK 470 LYS A 72 NZ REMARK 470 LYS A 76 CD CE NZ REMARK 470 GLU A 77 OE1 OE2 REMARK 470 LYS A 112 CD CE NZ REMARK 470 LYS A 132 NZ REMARK 470 LYS B 24 CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 LYS B 72 NZ REMARK 470 LYS B 112 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 74 -109.42 -99.79 REMARK 500 ASN A 96 -2.94 75.44 REMARK 500 ASP A 105 62.55 -154.30 REMARK 500 LEU B 74 -123.25 -100.81 REMARK 500 LEU B 74 -119.15 -100.81 REMARK 500 ASN B 96 -2.87 76.67 REMARK 500 ASP B 105 63.74 -150.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE B 4 -10.93 REMARK 500 ILE B 4 10.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 149 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 388451 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3D5P A 1 143 UNP Q5LEL2 Q5LEL2_BACFN 1 143 DBREF 3D5P B 1 143 UNP Q5LEL2 Q5LEL2_BACFN 1 143 SEQADV 3D5P GLY A 0 UNP Q5LEL2 LEADER SEQUENCE SEQADV 3D5P GLY B 0 UNP Q5LEL2 LEADER SEQUENCE SEQRES 1 A 144 GLY MSE GLU VAL ILE GLU SER LYS TRP TYR LYS LYS ASP SEQRES 2 A 144 GLY ALA SER SER ALA SER ILE ASP ASP VAL GLU LYS LEU SEQRES 3 A 144 LEU ASN THR THR LEU PRO LYS GLN TYR LYS SER PHE LEU SEQRES 4 A 144 LEU TRP SER ASN GLY GLY GLU GLY LYS LEU GLY ASP ASN SEQRES 5 A 144 TYR ILE TYR ILE TRP ALA ILE GLU ASP VAL ILE ALA TYR SEQRES 6 A 144 ASN HIS ASP TYR GLY ILE GLN LYS TYR LEU GLN LYS GLU SEQRES 7 A 144 TYR TRP ALA PHE GLY MSE ASP GLY ASP ILE GLY TYR ILE SEQRES 8 A 144 LEU HIS LEU SER ASP ASN SER ILE TYR ARG VAL ASP LEU SEQRES 9 A 144 GLY ASP LEU ASP ILE THR SER ILE LYS TYR ILE ALA PRO SEQRES 10 A 144 SER PHE ASP ASP PHE LEU GLY LYS ALA ILE TYR LEU ASN SEQRES 11 A 144 PHE ASN LYS LEU GLN ASN VAL ALA ASN ASN ASN LEU THR SEQRES 12 A 144 THR SEQRES 1 B 144 GLY MSE GLU VAL ILE GLU SER LYS TRP TYR LYS LYS ASP SEQRES 2 B 144 GLY ALA SER SER ALA SER ILE ASP ASP VAL GLU LYS LEU SEQRES 3 B 144 LEU ASN THR THR LEU PRO LYS GLN TYR LYS SER PHE LEU SEQRES 4 B 144 LEU TRP SER ASN GLY GLY GLU GLY LYS LEU GLY ASP ASN SEQRES 5 B 144 TYR ILE TYR ILE TRP ALA ILE GLU ASP VAL ILE ALA TYR SEQRES 6 B 144 ASN HIS ASP TYR GLY ILE GLN LYS TYR LEU GLN LYS GLU SEQRES 7 B 144 TYR TRP ALA PHE GLY MSE ASP GLY ASP ILE GLY TYR ILE SEQRES 8 B 144 LEU HIS LEU SER ASP ASN SER ILE TYR ARG VAL ASP LEU SEQRES 9 B 144 GLY ASP LEU ASP ILE THR SER ILE LYS TYR ILE ALA PRO SEQRES 10 B 144 SER PHE ASP ASP PHE LEU GLY LYS ALA ILE TYR LEU ASN SEQRES 11 B 144 PHE ASN LYS LEU GLN ASN VAL ALA ASN ASN ASN LEU THR SEQRES 12 B 144 THR MODRES 3D5P MSE A 1 MET SELENOMETHIONINE MODRES 3D5P MSE A 83 MET SELENOMETHIONINE MODRES 3D5P MSE B 1 MET SELENOMETHIONINE MODRES 3D5P MSE B 83 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 83 8 HET MSE B 1 16 HET MSE B 83 8 HET ACT A 144 4 HET ACT B 144 4 HET ACT B 145 4 HET GOL B 146 6 HET GOL B 147 6 HET GOL B 148 6 HET PEG B 149 7 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *335(H2 O) HELIX 1 1 SER A 15 ASN A 27 1 13 HELIX 2 2 PRO A 31 SER A 41 1 11 HELIX 3 3 ALA A 57 GLU A 59 5 3 HELIX 4 4 ASP A 60 GLY A 69 1 10 HELIX 5 5 GLY A 69 LEU A 74 1 6 HELIX 6 6 ASP A 107 ILE A 111 5 5 HELIX 7 7 SER A 117 ILE A 126 1 10 HELIX 8 8 SER B 15 ASN B 27 1 13 HELIX 9 9 PRO B 31 SER B 41 1 11 HELIX 10 10 ALA B 57 GLY B 69 1 13 HELIX 11 11 GLY B 69 LEU B 74 1 6 HELIX 12 12 ASP B 107 ILE B 111 5 5 HELIX 13 13 SER B 117 LEU B 128 1 12 SHEET 1 A 9 GLU A 2 ILE A 4 0 SHEET 2 A 9 GLU B 2 LYS B 10 -1 O TRP B 8 N ILE A 4 SHEET 3 A 9 SER A 6 LYS A 10 -1 N TRP A 8 O ILE B 4 SHEET 4 A 9 GLY A 44 LEU A 48 -1 O GLU A 45 N TYR A 9 SHEET 5 A 9 ASN A 51 ILE A 55 -1 O ILE A 55 N GLY A 44 SHEET 6 A 9 TYR A 78 ASP A 84 -1 O MSE A 83 N TYR A 54 SHEET 7 A 9 ILE A 87 HIS A 92 -1 O LEU A 91 N TRP A 79 SHEET 8 A 9 ILE A 98 ASP A 102 -1 O TYR A 99 N ILE A 90 SHEET 9 A 9 LYS A 112 ALA A 115 -1 O ILE A 114 N ILE A 98 SHEET 1 B 8 GLU A 2 ILE A 4 0 SHEET 2 B 8 GLU B 2 LYS B 10 -1 O TRP B 8 N ILE A 4 SHEET 3 B 8 GLY B 44 LEU B 48 -1 O GLU B 45 N TYR B 9 SHEET 4 B 8 ASN B 51 ILE B 55 -1 O ILE B 55 N GLY B 44 SHEET 5 B 8 TYR B 78 ASP B 84 -1 O MSE B 83 N TYR B 54 SHEET 6 B 8 ILE B 87 HIS B 92 -1 O LEU B 91 N TRP B 79 SHEET 7 B 8 ILE B 98 ASP B 102 -1 O VAL B 101 N GLY B 88 SHEET 8 B 8 LYS B 112 ALA B 115 -1 O ILE B 114 N ILE B 98 LINK C GLY A 0 N AMSE A 1 1555 1555 1.34 LINK C GLY A 0 N BMSE A 1 1555 1555 1.34 LINK C AMSE A 1 N AGLU A 2 1555 1555 1.34 LINK C BMSE A 1 N BGLU A 2 1555 1555 1.33 LINK C GLY A 82 N MSE A 83 1555 1555 1.32 LINK C MSE A 83 N ASP A 84 1555 1555 1.33 LINK C GLY B 0 N AMSE B 1 1555 1555 1.32 LINK C GLY B 0 N BMSE B 1 1555 1555 1.34 LINK C AMSE B 1 N GLU B 2 1555 1555 1.33 LINK C BMSE B 1 N GLU B 2 1555 1555 1.32 LINK C GLY B 82 N MSE B 83 1555 1555 1.34 LINK C MSE B 83 N ASP B 84 1555 1555 1.32 SITE 1 AC1 5 TYR A 73 LEU A 103 GLY A 104 ASP A 105 SITE 2 AC1 5 LEU A 106 SITE 1 AC2 4 LEU B 103 GLY B 104 ASP B 105 LEU B 106 SITE 1 AC3 3 GLU B 23 THR B 28 THR B 29 SITE 1 AC4 5 ASP B 12 LEU B 26 LYS B 76 TRP B 79 SITE 2 AC4 5 LEU B 93 SITE 1 AC5 3 ASP A 86 LYS B 47 TYR B 52 SITE 1 AC6 4 LYS A 47 TYR A 52 TYR B 68 ASP B 86 SITE 1 AC7 2 ILE B 62 TRP B 79 CRYST1 57.058 69.508 75.093 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013317 0.00000 MASTER 412 0 11 13 17 0 9 6 0 0 0 24 END