HEADER TRANSCRIPTION REGULATOR 12-MAR-08 3CJD TITLE CRYSTAL STRUCTURE OF PUTATIVE TETR TRANSCRIPTIONAL REGULATOR TITLE 2 (YP_510936.1) FROM JANNASCHIA SP. CCS1 AT 1.79 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANNASCHIA SP.; SOURCE 3 ORGANISM_TAXID: 290400; SOURCE 4 STRAIN: CCS1; SOURCE 5 GENE: YP_510936.1, JANN_2994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_510936.1, PUTATIVE TETR TRANSCRIPTIONAL REGULATOR, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, DNA-BINDING, TRANSCRIPTION REGULATION, KEYWDS 4 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 24-JUL-19 3CJD 1 REMARK LINK REVDAT 4 25-OCT-17 3CJD 1 REMARK REVDAT 3 13-JUL-11 3CJD 1 VERSN REVDAT 2 24-FEB-09 3CJD 1 VERSN REVDAT 1 01-APR-08 3CJD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE TETR TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (YP_510936.1) FROM JANNASCHIA SP. CCS1 AT 1.79 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 3 NUMBER OF REFLECTIONS : 32777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1127 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.43000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : -0.19000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2932 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2015 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3965 ; 1.835 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4903 ; 1.682 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 3.178 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;28.748 ;23.282 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 489 ; 9.115 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;11.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3249 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 596 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 611 ; 0.159 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1958 ; 0.114 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1402 ; 0.140 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1431 ; 0.069 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2191 ; 1.674 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 740 ; 0.281 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2900 ; 2.263 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 3.245 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1061 ; 4.436 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 75 REMARK 3 RESIDUE RANGE : A 84 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5820 -9.7510 44.3750 REMARK 3 T TENSOR REMARK 3 T11: -0.0661 T22: -0.0337 REMARK 3 T33: 0.0078 T12: -0.0053 REMARK 3 T13: 0.0185 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.5418 L22: 0.7145 REMARK 3 L33: 2.0867 L12: -0.2517 REMARK 3 L13: -0.1597 L23: 0.5750 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.0442 S13: 0.0055 REMARK 3 S21: -0.0346 S22: -0.0167 S23: 0.0377 REMARK 3 S31: 0.1405 S32: -0.0550 S33: 0.0570 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 77 REMARK 3 RESIDUE RANGE : B 84 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8860 14.7060 45.6590 REMARK 3 T TENSOR REMARK 3 T11: -0.0571 T22: -0.0313 REMARK 3 T33: -0.0385 T12: 0.0011 REMARK 3 T13: -0.0313 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.1076 L22: 0.6795 REMARK 3 L33: 1.9995 L12: -0.3376 REMARK 3 L13: -0.0249 L23: -0.6737 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0837 S13: -0.0180 REMARK 3 S21: -0.0067 S22: -0.0244 S23: -0.0324 REMARK 3 S31: -0.1923 S32: 0.0442 S33: -0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. STEARIC ACID (STE) HAS BEEN MODELED IN EACH MONOMER BASED ON REMARK 3 THE SHAPE OF THE DENSITY. HOWEVER, THIS COULD BE SOME OTHER REMARK 3 LIGAND. REMARK 3 5. THE NOMINAL RESOLUTION IS 1.90 A WITH 2943 OBSERVED REFLECTIONS REMARK 3 BETWEEN 1.90-1.79 (46.8% COMPLETE FOR THIS SHELL) INCLUDED IN REMARK 3 THE REFINEMENT. REMARK 4 REMARK 4 3CJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97961 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 29.801 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.75500 REMARK 200 R SYM FOR SHELL (I) : 0.75500 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.457M AMMONIUM DIHYDROGEN REMARK 280 PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE CRYSTAL PACKING ANALYSIS SUPPORTS REMARK 300 THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 ALA A 76 REMARK 465 VAL A 77 REMARK 465 VAL A 78 REMARK 465 ALA A 79 REMARK 465 ASP A 80 REMARK 465 GLY A 81 REMARK 465 GLN A 82 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 VAL B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 VAL B 78 REMARK 465 ALA B 79 REMARK 465 ASP B 80 REMARK 465 GLY B 81 REMARK 465 GLN B 82 REMARK 465 ASP B 83 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 89 CD NE CZ NH1 NH2 REMARK 470 GLU A 147 CD OE1 OE2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 ARG B 197 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 104 65.45 -119.90 REMARK 500 PHE A 145 72.92 -116.72 REMARK 500 PHE B 145 71.06 -117.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377925 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3CJD A 1 197 UNP Q28N01 Q28N01_JANSC 1 197 DBREF 3CJD B 1 197 UNP Q28N01 Q28N01_JANSC 1 197 SEQADV 3CJD GLY A 0 UNP Q28N01 LEADER SEQUENCE SEQADV 3CJD GLY B 0 UNP Q28N01 LEADER SEQUENCE SEQRES 1 A 198 GLY MSE ALA GLY LYS VAL GLU ALA ARG LYS ALA ALA LEU SEQRES 2 A 198 ARG GLU LYS LEU ILE ASP LEU ALA GLU ALA GLN ILE GLU SEQRES 3 A 198 ALA GLU GLY LEU ALA SER LEU ARG ALA ARG GLU LEU ALA SEQRES 4 A 198 ARG GLN ALA ASP CYS ALA VAL GLY ALA ILE TYR THR HIS SEQRES 5 A 198 PHE GLN ASP LEU ASN ALA LEU THR LEU GLU VAL ASN GLY SEQRES 6 A 198 ARG THR PHE ALA ARG LEU GLY ALA ALA VAL GLY ALA VAL SEQRES 7 A 198 VAL ALA ASP GLY GLN ASP ASP HIS PRO ASN GLU ARG LEU SEQRES 8 A 198 ILE ALA MSE SER HIS ALA TYR LEU ALA PHE ALA ARG GLU SEQRES 9 A 198 HIS PRO LYS LEU TRP ARG ALA LEU PHE ASP VAL GLU MSE SEQRES 10 A 198 ARG SER ASP GLY PRO VAL PRO GLN TRP TYR GLY HIS ALA SEQRES 11 A 198 MSE ALA GLN LEU PHE SER TYR ILE THR THR PRO LEU ALA SEQRES 12 A 198 LYS ILE PHE PRO GLU SER ASP ASP ALA GLU LEU ASP LEU SEQRES 13 A 198 MSE THR ARG THR LEU PHE SER SER VAL HIS GLY ILE VAL SEQRES 14 A 198 LEU LEU GLY LEU GLU ASN ARG ILE SER GLY VAL PRO GLY SEQRES 15 A 198 GLU GLN LEU LYS THR MSE ILE ARG LEU LEU LEU GLU GLN SEQRES 16 A 198 VAL GLY ARG SEQRES 1 B 198 GLY MSE ALA GLY LYS VAL GLU ALA ARG LYS ALA ALA LEU SEQRES 2 B 198 ARG GLU LYS LEU ILE ASP LEU ALA GLU ALA GLN ILE GLU SEQRES 3 B 198 ALA GLU GLY LEU ALA SER LEU ARG ALA ARG GLU LEU ALA SEQRES 4 B 198 ARG GLN ALA ASP CYS ALA VAL GLY ALA ILE TYR THR HIS SEQRES 5 B 198 PHE GLN ASP LEU ASN ALA LEU THR LEU GLU VAL ASN GLY SEQRES 6 B 198 ARG THR PHE ALA ARG LEU GLY ALA ALA VAL GLY ALA VAL SEQRES 7 B 198 VAL ALA ASP GLY GLN ASP ASP HIS PRO ASN GLU ARG LEU SEQRES 8 B 198 ILE ALA MSE SER HIS ALA TYR LEU ALA PHE ALA ARG GLU SEQRES 9 B 198 HIS PRO LYS LEU TRP ARG ALA LEU PHE ASP VAL GLU MSE SEQRES 10 B 198 ARG SER ASP GLY PRO VAL PRO GLN TRP TYR GLY HIS ALA SEQRES 11 B 198 MSE ALA GLN LEU PHE SER TYR ILE THR THR PRO LEU ALA SEQRES 12 B 198 LYS ILE PHE PRO GLU SER ASP ASP ALA GLU LEU ASP LEU SEQRES 13 B 198 MSE THR ARG THR LEU PHE SER SER VAL HIS GLY ILE VAL SEQRES 14 B 198 LEU LEU GLY LEU GLU ASN ARG ILE SER GLY VAL PRO GLY SEQRES 15 B 198 GLU GLN LEU LYS THR MSE ILE ARG LEU LEU LEU GLU GLN SEQRES 16 B 198 VAL GLY ARG MODRES 3CJD MSE A 93 MET SELENOMETHIONINE MODRES 3CJD MSE A 116 MET SELENOMETHIONINE MODRES 3CJD MSE A 130 MET SELENOMETHIONINE MODRES 3CJD MSE A 156 MET SELENOMETHIONINE MODRES 3CJD MSE A 187 MET SELENOMETHIONINE MODRES 3CJD MSE B 93 MET SELENOMETHIONINE MODRES 3CJD MSE B 116 MET SELENOMETHIONINE MODRES 3CJD MSE B 130 MET SELENOMETHIONINE MODRES 3CJD MSE B 156 MET SELENOMETHIONINE MODRES 3CJD MSE B 187 MET SELENOMETHIONINE HET MSE A 93 8 HET MSE A 116 8 HET MSE A 130 8 HET MSE A 156 8 HET MSE A 187 8 HET MSE B 93 8 HET MSE B 116 8 HET MSE B 130 8 HET MSE B 156 8 HET MSE B 187 8 HET CL A 202 1 HET STE A 201 20 HET STE A 203 20 HET CL B 202 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM STE STEARIC ACID FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 STE 2(C18 H36 O2) FORMUL 7 HOH *239(H2 O) HELIX 1 1 LYS A 9 GLY A 28 1 20 HELIX 2 2 LEU A 29 LEU A 32 5 4 HELIX 3 3 ARG A 33 ASP A 42 1 10 HELIX 4 4 ALA A 44 PHE A 52 1 9 HELIX 5 5 ASP A 54 GLY A 75 1 22 HELIX 6 6 HIS A 85 HIS A 104 1 20 HELIX 7 7 HIS A 104 VAL A 114 1 11 HELIX 8 8 PRO A 123 PHE A 145 1 23 HELIX 9 9 ASP A 149 GLU A 173 1 25 HELIX 10 10 PRO A 180 GLU A 182 5 3 HELIX 11 11 GLN A 183 GLN A 194 1 12 HELIX 12 12 ALA B 10 GLY B 28 1 19 HELIX 13 13 LEU B 29 LEU B 32 5 4 HELIX 14 14 ARG B 33 ASP B 42 1 10 HELIX 15 15 ALA B 44 PHE B 52 1 9 HELIX 16 16 ASP B 54 ALA B 76 1 23 HELIX 17 17 HIS B 85 HIS B 104 1 20 HELIX 18 18 HIS B 104 VAL B 114 1 11 HELIX 19 19 PRO B 123 PHE B 145 1 23 HELIX 20 20 ASP B 149 GLU B 173 1 25 HELIX 21 21 PRO B 180 GLU B 182 5 3 HELIX 22 22 GLN B 183 GLU B 193 1 11 LINK C ALA A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N SER A 94 1555 1555 1.33 LINK C GLU A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N ARG A 117 1555 1555 1.33 LINK C ALA A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N ALA A 131 1555 1555 1.34 LINK C LEU A 155 N MSE A 156 1555 1555 1.34 LINK C MSE A 156 N THR A 157 1555 1555 1.33 LINK C THR A 186 N MSE A 187 1555 1555 1.34 LINK C MSE A 187 N ILE A 188 1555 1555 1.33 LINK C ALA B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N SER B 94 1555 1555 1.33 LINK C GLU B 115 N MSE B 116 1555 1555 1.34 LINK C MSE B 116 N ARG B 117 1555 1555 1.33 LINK C ALA B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N ALA B 131 1555 1555 1.33 LINK C LEU B 155 N MSE B 156 1555 1555 1.34 LINK C MSE B 156 N THR B 157 1555 1555 1.33 LINK C THR B 186 N MSE B 187 1555 1555 1.33 LINK C MSE B 187 N ILE B 188 1555 1555 1.33 SITE 1 AC1 4 HIS A 104 PRO A 105 LYS A 106 LEU A 107 SITE 1 AC2 4 HIS B 104 PRO B 105 LYS B 106 LEU B 107 SITE 1 AC3 8 ARG A 175 ILE A 176 SER A 177 SER B 94 SITE 2 AC3 8 LEU B 111 LEU B 133 LEU B 160 PHE B 161 SITE 1 AC4 10 LEU A 70 SER A 94 LEU A 111 PHE A 112 SITE 2 AC4 10 LEU A 133 PHE A 134 LEU A 160 ARG B 175 SITE 3 AC4 10 ILE B 176 SER B 177 CRYST1 40.283 46.044 60.761 99.23 100.39 104.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024824 0.006553 0.006122 0.00000 SCALE2 0.000000 0.022462 0.004994 0.00000 SCALE3 0.000000 0.000000 0.017141 0.00000 MASTER 394 0 14 22 0 0 7 6 0 0 0 32 END