HEADER ISOMERASE 11-MAR-08 3CIN TITLE CRYSTAL STRUCTURE OF A MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELATED TITLE 2 PROTEIN (TM_1419) FROM THERMOTOGA MARITIMA MSB8 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 5.5.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8 / DSM 3109 / JCM 10099; SOURCE 5 ATCC: 43589; SOURCE 6 GENE: TM1419, TM_1419; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MH1 KEYWDS MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELATED PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JUL-19 3CIN 1 REMARK REVDAT 5 25-OCT-17 3CIN 1 REMARK REVDAT 4 13-JUL-11 3CIN 1 VERSN REVDAT 3 28-JUL-10 3CIN 1 TITLE KEYWDS REVDAT 2 24-FEB-09 3CIN 1 VERSN REVDAT 1 25-MAR-08 3CIN 0 SPRSDE 25-MAR-08 3CIN 1VJP JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF MYO-INOSITOL-1-PHOSPHATE JRNL TITL 2 SYNTHASE-RELATED PROTEIN (TM1419) FROM THERMOTOGA MARITIMA JRNL TITL 3 AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 43592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : 2.65000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.190 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3144 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2103 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4283 ; 1.711 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5168 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 5.780 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;36.215 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;14.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.122 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3470 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 606 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 624 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2144 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1561 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1623 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.333 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 78 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2079 ; 2.552 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 782 ; 0.669 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3122 ; 3.261 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1339 ; 5.256 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1160 ; 7.257 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2655 18.7264 40.8720 REMARK 3 T TENSOR REMARK 3 T11: -0.1300 T22: -0.1562 REMARK 3 T33: -0.0989 T12: -0.0183 REMARK 3 T13: 0.0048 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.6217 L22: 0.5168 REMARK 3 L33: 1.0463 L12: -0.4263 REMARK 3 L13: 0.7978 L23: -0.4268 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.0218 S13: 0.0177 REMARK 3 S21: -0.0027 S22: 0.0433 S23: 0.0166 REMARK 3 S31: 0.0312 S32: -0.0730 S33: -0.0362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. RESIDUE ASP 208 IS A RAMACHANDRAN OUTLIER, HOWEVER, REMARK 3 THE ELECTRON DENSITY IS UNAMBIGUOUS FOR THIS RESIDUE. REMARK 3 3. CHLORINE ATOMS WERE MODELED SINCE THEY REFINED TO REMARK 3 A BETTER B-FACTOR AGREEMENT WITH SURROUNDING RESIDUES. REMARK 3 4. THE NICOTINAMIDE RING WAS MODELED IN THE SAME REMARK 3 ORIENTATION AS OBSERVED IN HOMOLOGS, DESPITE RESIDUAL REMARK 3 FO-FC DENSITY INDICATION AT LEAST PARTIAL OCCUPANCY OF REMARK 3 THE ORIENTATION ROTATED BY 180 DEGREES. REMARK 3 5. MAGNESIUM WAS MODELED BASED ON COORDINATION GEOMETRY REMARK 3 AND ELECTRON DENSITY PEAK HEIGHT. REMARK 3 6. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 3CIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43592 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 41.135 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GR0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M MGCL2, 40.0% PEG 400, REMARK 280 0.1M CITRATE PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.47500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.50650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.47500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.50650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.47500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.50650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.47500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.50650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A TETRAMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 69.30400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 69.30400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 117.01300 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 117.01300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LEU A 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 NZ REMARK 470 LYS A 62 CE NZ REMARK 470 LYS A 117 CD CE NZ REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS A 173 CD CE NZ REMARK 470 LYS A 232 CE NZ REMARK 470 LYS A 257 CD CE NZ REMARK 470 LYS A 261 CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 25 O LYS A 25 3556 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 297 CB GLU A 297 CG -0.136 REMARK 500 GLU A 307 CB GLU A 307 CG -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 30 44.27 -77.75 REMARK 500 ALA A 36 -125.10 42.59 REMARK 500 LEU A 89 -127.91 39.58 REMARK 500 LEU A 89 -129.17 40.37 REMARK 500 ILE A 187 -62.36 -126.72 REMARK 500 ASP A 208 108.35 76.83 REMARK 500 SER A 300 -154.43 -108.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 386 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 354 O REMARK 620 2 PRO A 356 O 91.2 REMARK 620 3 GLU A 359 O 102.4 86.5 REMARK 620 4 HOH A 402 O 162.3 106.4 81.0 REMARK 620 5 HOH A 401 O 82.5 173.4 92.8 79.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283279 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHH. DBREF 3CIN A 1 382 UNP Q9X1D6 Q9X1D6_THEMA 1 382 SEQADV 3CIN MET A -11 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN GLY A -10 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN SER A -9 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN ASP A -8 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN LYS A -7 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN ILE A -6 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN HIS A -5 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN HIS A -4 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN HIS A -3 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN HIS A -2 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN HIS A -1 UNP Q9X1D6 LEADER SEQUENCE SEQADV 3CIN HIS A 0 UNP Q9X1D6 LEADER SEQUENCE SEQRES 1 A 394 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 394 VAL LYS VAL LEU ILE LEU GLY GLN GLY TYR VAL ALA SER SEQRES 3 A 394 THR PHE VAL ALA GLY LEU GLU LYS LEU ARG LYS GLY GLU SEQRES 4 A 394 ILE GLU PRO TYR GLY VAL PRO LEU ALA ARG GLU LEU PRO SEQRES 5 A 394 ILE GLY PHE GLU ASP ILE LYS ILE VAL GLY SER TYR ASP SEQRES 6 A 394 VAL ASP ARG ALA LYS ILE GLY LYS LYS LEU SER GLU VAL SEQRES 7 A 394 VAL LYS GLN TYR TRP ASN ASP VAL ASP SER LEU THR SER SEQRES 8 A 394 ASP PRO GLU ILE ARG LYS GLY VAL HIS LEU GLY SER VAL SEQRES 9 A 394 ARG ASN LEU PRO ILE GLU ALA GLU GLY LEU GLU ASP SER SEQRES 10 A 394 MET THR LEU LYS GLU ALA VAL ASP THR LEU VAL LYS GLU SEQRES 11 A 394 TRP THR GLU LEU ASP PRO ASP VAL ILE VAL ASN THR CYS SEQRES 12 A 394 THR THR GLU ALA PHE VAL PRO PHE GLY ASN LYS GLU ASP SEQRES 13 A 394 LEU LEU LYS ALA ILE GLU ASN ASN ASP LYS GLU ARG LEU SEQRES 14 A 394 THR ALA THR GLN VAL TYR ALA TYR ALA ALA ALA LEU TYR SEQRES 15 A 394 ALA ASN LYS ARG GLY GLY ALA ALA PHE VAL ASN VAL ILE SEQRES 16 A 394 PRO THR PHE ILE ALA ASN ASP PRO ALA PHE VAL GLU LEU SEQRES 17 A 394 ALA LYS GLU ASN ASN LEU VAL VAL PHE GLY ASP ASP GLY SEQRES 18 A 394 ALA THR GLY ALA THR PRO PHE THR ALA ASP VAL LEU SER SEQRES 19 A 394 HIS LEU ALA GLN ARG ASN ARG TYR VAL LYS ASP VAL ALA SEQRES 20 A 394 GLN PHE ASN ILE GLY GLY ASN MET ASP PHE LEU ALA LEU SEQRES 21 A 394 THR ASP ASP GLY LYS ASN LYS SER LYS GLU PHE THR LYS SEQRES 22 A 394 SER SER ILE VAL LYS ASP ILE LEU GLY TYR ASP ALA PRO SEQRES 23 A 394 HIS TYR ILE LYS PRO THR GLY TYR LEU GLU PRO LEU GLY SEQRES 24 A 394 ASP LYS LYS PHE ILE ALA ILE HIS ILE GLU TYR VAL SER SEQRES 25 A 394 PHE ASN GLY ALA THR ASP GLU LEU MET ILE ASN GLY ARG SEQRES 26 A 394 ILE ASN ASP SER PRO ALA LEU GLY GLY LEU LEU VAL ASP SEQRES 27 A 394 LEU VAL ARG LEU GLY LYS ILE ALA LEU ASP ARG LYS GLU SEQRES 28 A 394 PHE GLY THR VAL TYR PRO VAL ASN ALA PHE TYR MET LYS SEQRES 29 A 394 ASN PRO GLY PRO ALA GLU GLU LYS ASN ILE PRO ARG ILE SEQRES 30 A 394 ILE ALA TYR GLU LYS MET ARG ILE TRP ALA GLY LEU LYS SEQRES 31 A 394 PRO LYS TRP LEU HET CL A 383 1 HET CL A 384 1 HET CL A 385 1 HET MG A 386 1 HET NAD A 400 44 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 2 CL 3(CL 1-) FORMUL 5 MG MG 2+ FORMUL 6 NAD C21 H27 N7 O14 P2 FORMUL 7 HOH *233(H2 O) HELIX 1 1 GLY A 10 LYS A 25 1 16 HELIX 2 2 GLY A 42 GLU A 44 5 3 HELIX 3 3 LYS A 62 TRP A 71 1 10 HELIX 4 4 GLY A 101 SER A 105 5 5 HELIX 5 5 THR A 107 ASP A 123 1 17 HELIX 6 6 ASN A 141 ASN A 151 1 11 HELIX 7 7 THR A 158 GLY A 175 1 18 HELIX 8 8 ASP A 190 ASN A 200 1 11 HELIX 9 9 GLY A 212 ARG A 227 1 16 HELIX 10 10 ASN A 242 ALA A 247 5 6 HELIX 11 11 THR A 249 LYS A 261 1 13 HELIX 12 12 SER A 263 GLY A 270 1 8 HELIX 13 13 GLU A 284 GLY A 287 5 4 HELIX 14 14 PHE A 301 GLY A 303 5 3 HELIX 15 15 ASP A 316 ARG A 337 1 22 HELIX 16 16 VAL A 343 MET A 351 1 9 HELIX 17 17 PRO A 363 ALA A 375 1 13 SHEET 1 A 7 ARG A 84 LYS A 85 0 SHEET 2 A 7 ILE A 46 ASP A 53 1 N SER A 51 O ARG A 84 SHEET 3 A 7 VAL A 2 LEU A 7 1 N VAL A 4 O LYS A 47 SHEET 4 A 7 VAL A 126 ASN A 129 1 O VAL A 128 N LEU A 7 SHEET 5 A 7 ALA A 177 ASN A 181 1 O VAL A 180 N ILE A 127 SHEET 6 A 7 LEU A 202 PHE A 205 1 O PHE A 205 N ASN A 181 SHEET 7 A 7 GLY A 341 THR A 342 1 O GLY A 341 N VAL A 204 SHEET 1 B 3 HIS A 275 TYR A 276 0 SHEET 2 B 3 TYR A 230 GLY A 240 1 N GLN A 236 O TYR A 276 SHEET 3 B 3 GLY A 281 TYR A 282 1 O GLY A 281 N GLY A 240 SHEET 1 C 4 HIS A 275 TYR A 276 0 SHEET 2 C 4 TYR A 230 GLY A 240 1 N GLN A 236 O TYR A 276 SHEET 3 C 4 LYS A 289 VAL A 299 -1 O VAL A 299 N TYR A 230 SHEET 4 C 4 THR A 305 ASN A 315 -1 O LEU A 308 N ILE A 296 LINK O PRO A 354 MG MG A 386 1555 1555 2.35 LINK O PRO A 356 MG MG A 386 1555 1555 2.50 LINK O GLU A 359 MG MG A 386 1555 1555 2.28 LINK MG MG A 386 O HOH A 402 1555 1555 2.33 LINK MG MG A 386 O HOH A 401 1555 1555 2.39 CISPEP 1 GLY A 206 ASP A 207 0 -4.18 CISPEP 2 GLY A 355 PRO A 356 0 3.19 SITE 1 AC1 3 GLY A 212 ARG A 229 HOH A 506 SITE 1 AC2 5 ALA A 218 ASP A 219 SER A 222 PRO A 363 SITE 2 AC2 5 ARG A 364 SITE 1 AC3 4 ALA A 213 ASN A 238 LYS A 290 HOH A 433 SITE 1 AC4 6 ASN A 189 PRO A 354 PRO A 356 GLU A 359 SITE 2 AC4 6 HOH A 401 HOH A 402 SITE 1 AC5 26 GLY A 8 GLN A 9 GLY A 10 TYR A 11 SITE 2 AC5 26 ASP A 53 LYS A 58 SER A 91 THR A 130 SITE 3 AC5 26 CYS A 131 THR A 132 THR A 133 ALA A 159 SITE 4 AC5 26 TYR A 163 ILE A 183 ASP A 208 THR A 211 SITE 5 AC5 26 MET A 243 ASP A 244 ASP A 316 LEU A 320 SITE 6 AC5 26 HOH A 411 HOH A 416 HOH A 421 HOH A 426 SITE 7 AC5 26 HOH A 474 HOH A 563 CRYST1 69.304 104.950 117.013 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008546 0.00000 MASTER 457 0 5 17 14 0 13 6 0 0 0 31 END