HEADER HYDROLASE 10-MAR-08 3CHO TITLE CRYSTAL STRUCTURE OF LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH 2-AMINO- TITLE 2 N-[4-(PHENYLMETHOXY)PHENYL]-ACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE, LEUKOTRIENE A(4) HYDROLASE; COMPND 5 EC: 3.3.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LTA4H, LTA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT3-MB4 KEYWDS EPOXIDE HYDROLASE, ALPHA-BETA PROTEIN, LEUKOTRIENE BIOSYNTHESIS, KEYWDS 2 METALLOPROTEASE, INHIBITOR COMPLEX, ALTERNATIVE SPLICING, CYTOPLASM, KEYWDS 3 METAL-BINDING, MULTIFUNCTIONAL ENZYME, ZINC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.G.M.THUNNISSEN,M.ADLER,M.WHITLOW REVDAT 5 20-NOV-19 3CHO 1 LINK REVDAT 4 07-MAR-18 3CHO 1 REMARK REVDAT 3 24-FEB-09 3CHO 1 VERSN REVDAT 2 27-MAY-08 3CHO 1 JRNL REVDAT 1 22-APR-08 3CHO 0 JRNL AUTH T.A.KIRKLAND,M.ADLER,J.G.BAUMAN,M.CHEN,J.Z.HAEGGSTROM, JRNL AUTH 2 B.KING,M.J.KOCHANNY,A.M.LIANG,L.MENDOZA,G.B.PHILLIPS, JRNL AUTH 3 M.THUNNISSEN,L.TRINH,M.WHITLOW,B.YE,H.YE,J.PARKINSON, JRNL AUTH 4 W.J.GUILFORD JRNL TITL SYNTHESIS OF GLUTAMIC ACID ANALOGS AS POTENT INHIBITORS OF JRNL TITL 2 LEUKOTRIENE A4 HYDROLASE. JRNL REF BIOORG.MED.CHEM. V. 16 4963 2008 JRNL REFN ISSN 0968-0896 JRNL PMID 18394906 JRNL DOI 10.1016/J.BMC.2008.03.042 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.M.G.M.THUNNISSEN,P.N.NORDLUND,J.Z.HAEGGSTROM REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN LEUKOTRIENE A4 HYDROLASE, A REMARK 1 TITL 2 BIFUNCTIONAL ENZYME IN INFLAMMATION REMARK 1 REF NAT.STRUCT.BIOL. V. 8 131 2001 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.M.G.M.THUNNISSEN,B.ANDERSON,B.SAMUELSSON,C.-H.WONG, REMARK 1 AUTH 2 J.Z.HAEGGSTROM REMARK 1 TITL CRYSTAL STRUCTURES OF LEUKOTRIENE A4 HYDROLASE IN COMPLEX REMARK 1 TITL 2 WITH CAPTOPRIL AND TWO COMPETITIVE TIGHT-BINDING INHIBITORS. REMARK 1 REF FASEB J. V. 16 1648 2002 REMARK 1 REFN ISSN 0892-6638 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.C.RUDBERG,F.THOLANDER,M.M.THUNNISSEN,B.SAMUELSSON, REMARK 1 AUTH 2 J.Z.HAEGGSTROM REMARK 1 TITL LEUKOTRIENE A4 HYDROLASE: SELECTIVE ABROGATION OF REMARK 1 TITL 2 LEUKOTRIENE B4 FORMATION BY MUTATION OF ASPARTIC ACID 375. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 99 4215 2002 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH P.C.RUDBERG,F.O.T.THOLANDER,M.ANDBERG,M.M.G.M.THUNNISSEN, REMARK 1 AUTH 2 J.Z.HAEGGSTROM REMARK 1 TITL LEUKOTRIENE A4 HYDROLASE: IDENTIFICATION OF A COMMON REMARK 1 TITL 2 CARBOXYLATE RECOGNITION SITE FOR THE EPOXIDE HYDROLASE AND REMARK 1 TITL 3 AMINOPEPTIDASE SUBSTRATES REMARK 1 REF J.BIOL.CHEM. V. 279 27376 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1847035.990 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 59767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2038 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4988 REMARK 3 BIN R VALUE (WORKING SET) : 0.2287 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 180 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 594 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : -6.91000 REMARK 3 B33 (A**2) : 5.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.640 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.530 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.030 ; 2.050 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.740 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.870 ; 3.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.46 REMARK 3 BSOL : 69.90 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : ZN.PARAM REMARK 3 PARAMETER FILE 5 : 597.PARAM REMARK 3 PARAMETER FILE 6 : IMD.PARAM REMARK 3 PARAMETER FILE 7 : ACE.PARAM REMARK 3 PARAMETER FILE 8 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : ZN.TOP REMARK 3 TOPOLOGY FILE 5 : 597.TOP REMARK 3 TOPOLOGY FILE 6 : IMD.TOP REMARK 3 TOPOLOGY FILE 7 : ACE.TOP REMARK 3 TOPOLOGY FILE 8 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.076 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 14.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25200 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: CNX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM ACETATE, IMIDEAZOLE REMARK 280 PH 6.8, YBCL2, BESTATIN, LIQUID DIFFUSION, TEMPERATURE 298K, PH REMARK 280 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.15600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.68200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.56200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.68200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.15600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.56200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 79 66.27 -112.87 REMARK 500 SER A 80 -130.45 57.77 REMARK 500 ASN A 97 -3.90 80.28 REMARK 500 ASP A 183 96.86 -170.80 REMARK 500 GLU A 271 43.25 -83.82 REMARK 500 CYS A 274 -16.61 78.26 REMARK 500 LEU A 275 83.33 -152.66 REMARK 500 PHE A 432 40.97 -100.70 REMARK 500 LYS A 546 37.10 70.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 HIS A 299 NE2 103.3 REMARK 620 3 GLU A 318 OE1 94.0 106.7 REMARK 620 4 GLU A 318 OE2 147.9 84.5 54.2 REMARK 620 5 HOH A1006 O 119.0 122.1 107.6 79.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 801 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 481 OD1 REMARK 620 2 ASP A 481 OD2 52.4 REMARK 620 3 ACT A 820 OXT 81.5 73.8 REMARK 620 4 ACT A 820 O 129.9 119.2 52.9 REMARK 620 5 HOH A1631 O 79.8 70.3 143.9 149.4 REMARK 620 6 HOH A1632 O 130.0 77.7 89.4 75.0 79.6 REMARK 620 7 HOH A1633 O 142.9 146.6 128.2 75.3 83.2 77.9 REMARK 620 8 ASP A 47 OD1 122.8 70.5 79.0 72.4 85.7 11.4 88.1 REMARK 620 9 ASP A 47 OD2 123.2 71.0 77.7 71.0 87.1 12.3 88.3 1.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4BG A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HS6 RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE COMPLEXED WITH BESTATIN REMARK 900 RELATED ID: 1GW6 RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE D375N MUTANT REMARK 900 RELATED ID: 1H19 RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE E271Q MUTANT REMARK 900 RELATED ID: 1SQM RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE R563A MUTANT REMARK 900 RELATED ID: 3CHP RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH (3S)-3-AMINO- REMARK 900 4-OXO-4-[(4-PHENYLMETHOXYPHENYL)AMINO]BUTANOIC ACID REMARK 900 RELATED ID: 3CHQ RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH N5-[4- REMARK 900 (PHENYLMETHOXY)PHENYL]-L-GLUTAMINE REMARK 900 RELATED ID: 3CHR RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH 4-AMINO-N-[4- REMARK 900 (PHENYLMETHOXY)PHENYL]-BUTANAMIDE REMARK 900 RELATED ID: 3CHS RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH (2S)-2-AMINO- REMARK 900 5-[[4-[(2S)-2-HYDROXY-2-PHENYL-ETHOXY]PHENYL]AMINO]-5-OXO-PENTANOIC REMARK 900 ACID REMARK 900 RELATED ID: 2VJ8 RELATED DB: PDB REMARK 900 STRUCTURE OF LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH HYDROXAMIC REMARK 900 ACID BASED INHIBITOR DBREF 3CHO A 1 610 UNP P09960 LKHA4_HUMAN 2 611 SEQRES 1 A 610 PRO GLU ILE VAL ASP THR CYS SER LEU ALA SER PRO ALA SEQRES 2 A 610 SER VAL CYS ARG THR LYS HIS LEU HIS LEU ARG CYS SER SEQRES 3 A 610 VAL ASP PHE THR ARG ARG THR LEU THR GLY THR ALA ALA SEQRES 4 A 610 LEU THR VAL GLN SER GLN GLU ASP ASN LEU ARG SER LEU SEQRES 5 A 610 VAL LEU ASP THR LYS ASP LEU THR ILE GLU LYS VAL VAL SEQRES 6 A 610 ILE ASN GLY GLN GLU VAL LYS TYR ALA LEU GLY GLU ARG SEQRES 7 A 610 GLN SER TYR LYS GLY SER PRO MET GLU ILE SER LEU PRO SEQRES 8 A 610 ILE ALA LEU SER LYS ASN GLN GLU ILE VAL ILE GLU ILE SEQRES 9 A 610 SER PHE GLU THR SER PRO LYS SER SER ALA LEU GLN TRP SEQRES 10 A 610 LEU THR PRO GLU GLN THR SER GLY LYS GLU HIS PRO TYR SEQRES 11 A 610 LEU PHE SER GLN CYS GLN ALA ILE HIS CYS ARG ALA ILE SEQRES 12 A 610 LEU PRO CYS GLN ASP THR PRO SER VAL LYS LEU THR TYR SEQRES 13 A 610 THR ALA GLU VAL SER VAL PRO LYS GLU LEU VAL ALA LEU SEQRES 14 A 610 MET SER ALA ILE ARG ASP GLY GLU THR PRO ASP PRO GLU SEQRES 15 A 610 ASP PRO SER ARG LYS ILE TYR LYS PHE ILE GLN LYS VAL SEQRES 16 A 610 PRO ILE PRO CYS TYR LEU ILE ALA LEU VAL VAL GLY ALA SEQRES 17 A 610 LEU GLU SER ARG GLN ILE GLY PRO ARG THR LEU VAL TRP SEQRES 18 A 610 SER GLU LYS GLU GLN VAL GLU LYS SER ALA TYR GLU PHE SEQRES 19 A 610 SER GLU THR GLU SER MET LEU LYS ILE ALA GLU ASP LEU SEQRES 20 A 610 GLY GLY PRO TYR VAL TRP GLY GLN TYR ASP LEU LEU VAL SEQRES 21 A 610 LEU PRO PRO SER PHE PRO TYR GLY GLY MET GLU ASN PRO SEQRES 22 A 610 CYS LEU THR PHE VAL THR PRO THR LEU LEU ALA GLY ASP SEQRES 23 A 610 LYS SER LEU SER ASN VAL ILE ALA HIS GLU ILE SER HIS SEQRES 24 A 610 SER TRP THR GLY ASN LEU VAL THR ASN LYS THR TRP ASP SEQRES 25 A 610 HIS PHE TRP LEU ASN GLU GLY HIS THR VAL TYR LEU GLU SEQRES 26 A 610 ARG HIS ILE CYS GLY ARG LEU PHE GLY GLU LYS PHE ARG SEQRES 27 A 610 HIS PHE ASN ALA LEU GLY GLY TRP GLY GLU LEU GLN ASN SEQRES 28 A 610 SER VAL LYS THR PHE GLY GLU THR HIS PRO PHE THR LYS SEQRES 29 A 610 LEU VAL VAL ASP LEU THR ASP ILE ASP PRO ASP VAL ALA SEQRES 30 A 610 TYR SER SER VAL PRO TYR GLU LYS GLY PHE ALA LEU LEU SEQRES 31 A 610 PHE TYR LEU GLU GLN LEU LEU GLY GLY PRO GLU ILE PHE SEQRES 32 A 610 LEU GLY PHE LEU LYS ALA TYR VAL GLU LYS PHE SER TYR SEQRES 33 A 610 LYS SER ILE THR THR ASP ASP TRP LYS ASP PHE LEU TYR SEQRES 34 A 610 SER TYR PHE LYS ASP LYS VAL ASP VAL LEU ASN GLN VAL SEQRES 35 A 610 ASP TRP ASN ALA TRP LEU TYR SER PRO GLY LEU PRO PRO SEQRES 36 A 610 ILE LYS PRO ASN TYR ASP MET THR LEU THR ASN ALA CYS SEQRES 37 A 610 ILE ALA LEU SER GLN ARG TRP ILE THR ALA LYS GLU ASP SEQRES 38 A 610 ASP LEU ASN SER PHE ASN ALA THR ASP LEU LYS ASP LEU SEQRES 39 A 610 SER SER HIS GLN LEU ASN GLU PHE LEU ALA GLN THR LEU SEQRES 40 A 610 GLN ARG ALA PRO LEU PRO LEU GLY HIS ILE LYS ARG MET SEQRES 41 A 610 GLN GLU VAL TYR ASN PHE ASN ALA ILE ASN ASN SER GLU SEQRES 42 A 610 ILE ARG PHE ARG TRP LEU ARG LEU CYS ILE GLN SER LYS SEQRES 43 A 610 TRP GLU ASP ALA ILE PRO LEU ALA LEU LYS MET ALA THR SEQRES 44 A 610 GLU GLN GLY ARG MET LYS PHE THR ARG PRO LEU PHE LYS SEQRES 45 A 610 ASP LEU ALA ALA PHE ASP LYS SER HIS ASP GLN ALA VAL SEQRES 46 A 610 ARG THR TYR GLN GLU HIS LYS ALA SER MET HIS PRO VAL SEQRES 47 A 610 THR ALA MET LEU VAL GLY LYS ASP LEU LYS VAL ASP HET ZN A 701 1 HET YB A 801 1 HET ACT A 820 4 HET 4BG A 901 19 HETNAM ZN ZINC ION HETNAM YB YTTERBIUM (III) ION HETNAM ACT ACETATE ION HETNAM 4BG N-[4-(BENZYLOXY)PHENYL]GLYCINAMIDE HETSYN 4BG 2-AMINO-N-[4-(PHENYLMETHOXY)PHENYL]-ACETAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 YB YB 3+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 4BG C15 H16 N2 O2 FORMUL 6 HOH *594(H2 O) HELIX 1 1 GLN A 79 GLY A 83 5 5 HELIX 2 2 THR A 119 THR A 123 5 5 HELIX 3 3 HIS A 139 ILE A 143 5 5 HELIX 4 4 TYR A 200 ILE A 202 5 3 HELIX 5 5 GLU A 223 GLU A 225 5 3 HELIX 6 6 GLN A 226 PHE A 234 1 9 HELIX 7 7 GLU A 236 GLY A 249 1 14 HELIX 8 8 PRO A 280 LEU A 283 5 4 HELIX 9 9 SER A 290 HIS A 299 1 10 HELIX 10 10 THR A 310 ASP A 312 5 3 HELIX 11 11 HIS A 313 GLY A 334 1 22 HELIX 12 12 GLY A 334 GLY A 357 1 24 HELIX 13 13 HIS A 360 LYS A 364 5 5 HELIX 14 14 ASP A 373 TYR A 378 1 6 HELIX 15 15 SER A 380 GLY A 398 1 19 HELIX 16 16 GLY A 399 SER A 415 1 17 HELIX 17 17 THR A 420 PHE A 432 1 13 HELIX 18 18 LYS A 435 ASN A 440 1 6 HELIX 19 19 ASP A 443 SER A 450 1 8 HELIX 20 20 THR A 465 ALA A 478 1 14 HELIX 21 21 LYS A 479 PHE A 486 5 8 HELIX 22 22 ASN A 487 LYS A 492 5 6 HELIX 23 23 SER A 495 GLN A 508 1 14 HELIX 24 24 PRO A 513 ASN A 525 1 13 HELIX 25 25 PHE A 526 ILE A 529 5 4 HELIX 26 26 ASN A 531 SER A 545 1 15 HELIX 27 27 TRP A 547 ASP A 549 5 3 HELIX 28 28 ALA A 550 GLN A 561 1 12 HELIX 29 29 ARG A 563 PHE A 577 1 15 HELIX 30 30 SER A 580 LYS A 592 1 13 HELIX 31 31 ALA A 593 MET A 595 5 3 HELIX 32 32 HIS A 596 LYS A 608 1 13 SHEET 1 A 8 GLN A 69 GLU A 70 0 SHEET 2 A 8 LEU A 59 ILE A 66 -1 N ILE A 66 O GLN A 69 SHEET 3 A 8 GLU A 99 THR A 108 -1 O GLU A 103 N VAL A 65 SHEET 4 A 8 THR A 33 SER A 44 -1 N LEU A 40 O ILE A 102 SHEET 5 A 8 CYS A 16 ASP A 28 -1 N LYS A 19 O THR A 41 SHEET 6 A 8 LYS A 153 PRO A 163 1 O SER A 161 N CYS A 25 SHEET 7 A 8 ARG A 186 PRO A 198 -1 O LYS A 187 N VAL A 162 SHEET 8 A 8 ILE A 173 PRO A 179 -1 N THR A 178 O ILE A 188 SHEET 1 B 3 LEU A 49 THR A 56 0 SHEET 2 B 3 SER A 84 LEU A 94 -1 O ILE A 88 N LEU A 52 SHEET 3 B 3 TYR A 73 LEU A 75 -1 N ALA A 74 O GLU A 87 SHEET 1 C 4 LEU A 115 LEU A 118 0 SHEET 2 C 4 TYR A 130 SER A 133 -1 O TYR A 130 N LEU A 118 SHEET 3 C 4 LEU A 204 GLY A 207 -1 O VAL A 206 N LEU A 131 SHEET 4 C 4 VAL A 167 MET A 170 -1 N VAL A 167 O GLY A 207 SHEET 1 D 5 GLU A 210 GLY A 215 0 SHEET 2 D 5 THR A 218 SER A 222 -1 O VAL A 220 N ARG A 212 SHEET 3 D 5 ASP A 257 VAL A 260 1 O VAL A 260 N TRP A 221 SHEET 4 D 5 LEU A 275 VAL A 278 1 O THR A 276 N LEU A 259 SHEET 5 D 5 GLY A 269 MET A 270 -1 N MET A 270 O PHE A 277 SHEET 1 E 2 VAL A 306 ASN A 308 0 SHEET 2 E 2 LYS A 417 ILE A 419 1 O ILE A 419 N THR A 307 LINK NE2 HIS A 295 ZN ZN A 701 1555 1555 2.08 LINK NE2 HIS A 299 ZN ZN A 701 1555 1555 2.07 LINK OE1 GLU A 318 ZN ZN A 701 1555 1555 2.10 LINK OE2 GLU A 318 ZN ZN A 701 1555 1555 2.61 LINK OD1 ASP A 481 YB YB A 801 1555 1555 2.37 LINK OD2 ASP A 481 YB YB A 801 1555 1555 2.58 LINK ZN ZN A 701 O HOH A1006 1555 1555 2.24 LINK YB YB A 801 OXT ACT A 820 1555 1555 2.34 LINK YB YB A 801 O ACT A 820 1555 1555 2.48 LINK YB YB A 801 O HOH A1631 1555 1555 2.33 LINK YB YB A 801 O HOH A1632 1555 1555 2.38 LINK YB YB A 801 O HOH A1633 1555 1555 2.14 LINK OD1 ASP A 47 YB YB A 801 1555 1545 2.40 LINK OD2 ASP A 47 YB YB A 801 1555 1545 2.45 CISPEP 1 GLN A 136 ALA A 137 0 0.06 CISPEP 2 ALA A 510 PRO A 511 0 2.89 SITE 1 AC1 4 HIS A 295 HIS A 299 GLU A 318 HOH A1006 SITE 1 AC2 5 ASP A 47 ASP A 481 HOH A1631 HOH A1632 SITE 2 AC2 5 HOH A1633 SITE 1 AC3 7 ASP A 47 ARG A 174 LYS A 479 ASP A 481 SITE 2 AC3 7 HOH A1028 HOH A1632 HOH A1633 SITE 1 AC4 17 GLN A 136 ALA A 137 TYR A 267 GLY A 269 SITE 2 AC4 17 MET A 270 TRP A 311 PHE A 314 LEU A 369 SITE 3 AC4 17 PRO A 374 ASP A 375 ALA A 377 TYR A 378 SITE 4 AC4 17 TYR A 383 HOH A1008 HOH A1016 HOH A1370 SITE 5 AC4 17 HOH A1552 CRYST1 78.312 87.124 99.364 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012769 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010064 0.00000 MASTER 361 0 4 32 22 0 10 6 0 0 0 47 END