HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-FEB-08 3C9Q TITLE CRYSTAL STRUCTURE OF THE UNCHARACTERIZED HUMAN PROTEIN C8ORF32 WITH TITLE 2 BOUND PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN C8ORF32; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SYNTHETIC PEPTIDE; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C8ORF32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP16; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS MEDICALLY RELEVANT, PUTATIVE INVOLVEMENT IN HUMAN INHERITED ATAXIAS KEYWDS 2 AND DISORDERS OF PURKINJE CELL DEGENERATION, CANDIDATE GENE KEYWDS 3 IMPORTANT IN THE PATHOGENESIS OF T-CELL PROLYMPHOCYTIC LEUKEMIA, KEYWDS 4 GENE ASSOCIATED WITH CRE-PATHWAY ACTIVATION, PROTEIN STRUCTURE KEYWDS 5 INITIATIVE, PSI-2, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 6 STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR E.BITTO,C.A.BINGMAN,J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 4 25-OCT-17 3C9Q 1 REMARK REVDAT 3 13-JUL-11 3C9Q 1 VERSN REVDAT 2 24-FEB-09 3C9Q 1 VERSN REVDAT 1 26-FEB-08 3C9Q 0 JRNL AUTH E.BITTO,C.A.BINGMAN,J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR. JRNL TITL CRYSTAL STRUCTURE OF THE UNCHARACTERIZED HUMAN PROTEIN JRNL TITL 2 C8ORF32 WITH BOUND PEPTIDE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.023 REMARK 3 FREE R VALUE TEST SET COUNT : 2049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01300 REMARK 3 B22 (A**2) : 0.12200 REMARK 3 B33 (A**2) : -0.13500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1741 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2370 ; 1.545 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 207 ; 6.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;25.494 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 267 ;13.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1351 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 780 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1168 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.266 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1048 ; 1.790 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1671 ; 2.640 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 800 ; 4.051 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 696 ; 5.689 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2868 30.5622 12.1676 REMARK 3 T TENSOR REMARK 3 T11: -0.0212 T22: -0.1351 REMARK 3 T33: -0.0736 T12: 0.0273 REMARK 3 T13: 0.0094 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 20.5725 L22: 2.5558 REMARK 3 L33: 5.6526 L12: 6.5442 REMARK 3 L13: 1.7606 L23: 2.1750 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.3435 S13: 0.3461 REMARK 3 S21: -0.0983 S22: 0.1448 S23: 0.1978 REMARK 3 S31: -0.6986 S32: -0.0753 S33: -0.1214 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1590 20.0261 7.3989 REMARK 3 T TENSOR REMARK 3 T11: -0.1198 T22: -0.1043 REMARK 3 T33: -0.1347 T12: 0.0103 REMARK 3 T13: 0.0002 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.6548 L22: 2.5536 REMARK 3 L33: 1.3443 L12: 1.2053 REMARK 3 L13: -0.1025 L23: 0.1986 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.0014 S13: 0.0814 REMARK 3 S21: -0.1093 S22: 0.0100 S23: 0.0269 REMARK 3 S31: -0.1554 S32: -0.0992 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0373 15.7944 19.5667 REMARK 3 T TENSOR REMARK 3 T11: -0.1584 T22: -0.1155 REMARK 3 T33: -0.1535 T12: 0.0148 REMARK 3 T13: -0.0327 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.0253 L22: 2.4283 REMARK 3 L33: 2.7045 L12: -0.1079 REMARK 3 L13: -0.6246 L23: 0.0882 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.0773 S13: -0.0859 REMARK 3 S21: -0.0939 S22: -0.0374 S23: -0.1577 REMARK 3 S31: 0.1121 S32: 0.0763 S33: 0.0701 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5354 18.1363 21.3008 REMARK 3 T TENSOR REMARK 3 T11: -0.1100 T22: -0.0838 REMARK 3 T33: -0.1140 T12: -0.0047 REMARK 3 T13: -0.0150 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.4354 L22: 1.2684 REMARK 3 L33: 1.9369 L12: 0.1269 REMARK 3 L13: -1.0564 L23: -0.7620 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: -0.1860 S13: 0.2077 REMARK 3 S21: 0.1494 S22: -0.1028 S23: 0.1259 REMARK 3 S31: -0.1213 S32: -0.1395 S33: 0.0115 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7916 18.7173 26.8157 REMARK 3 T TENSOR REMARK 3 T11: -0.1145 T22: -0.0917 REMARK 3 T33: -0.1129 T12: -0.0165 REMARK 3 T13: -0.0036 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.2250 L22: 3.5058 REMARK 3 L33: 1.5842 L12: -0.2146 REMARK 3 L13: -0.2573 L23: -1.8182 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.1155 S13: 0.0234 REMARK 3 S21: 0.3246 S22: -0.0198 S23: -0.0365 REMARK 3 S31: -0.1690 S32: 0.0060 S33: 0.0208 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0563 11.1520 11.2026 REMARK 3 T TENSOR REMARK 3 T11: -0.1383 T22: -0.1287 REMARK 3 T33: -0.1052 T12: 0.0294 REMARK 3 T13: 0.0034 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.1766 L22: 1.3954 REMARK 3 L33: 3.5439 L12: -0.0819 REMARK 3 L13: 0.3232 L23: 0.4714 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0490 S13: -0.1253 REMARK 3 S21: -0.0468 S22: -0.0127 S23: -0.0625 REMARK 3 S31: 0.0455 S32: 0.0597 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1638 -0.6758 5.8466 REMARK 3 T TENSOR REMARK 3 T11: 0.0754 T22: -0.0087 REMARK 3 T33: 0.1563 T12: -0.0739 REMARK 3 T13: -0.0587 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 26.7925 L22: 22.0417 REMARK 3 L33: 12.8940 L12: -0.8510 REMARK 3 L13: -5.9702 L23: -4.4518 REMARK 3 S TENSOR REMARK 3 S11: 0.2108 S12: -0.3914 S13: -2.8190 REMARK 3 S21: -0.1007 S22: -0.3273 S23: 0.2097 REMARK 3 S31: 1.4231 S32: 0.0014 S33: 0.1165 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5751 8.9740 2.0155 REMARK 3 T TENSOR REMARK 3 T11: -0.0906 T22: -0.0558 REMARK 3 T33: -0.1084 T12: -0.0075 REMARK 3 T13: 0.0067 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 5.5782 L22: 0.7653 REMARK 3 L33: 1.0658 L12: -0.5029 REMARK 3 L13: 0.8470 L23: -0.0682 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.1692 S13: -0.3683 REMARK 3 S21: -0.0873 S22: -0.0269 S23: -0.0347 REMARK 3 S31: 0.1452 S32: 0.1142 S33: 0.0205 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7129 11.6612 22.0650 REMARK 3 T TENSOR REMARK 3 T11: -0.0894 T22: -0.0407 REMARK 3 T33: -0.0620 T12: 0.0088 REMARK 3 T13: -0.0138 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.2319 L22: 0.7379 REMARK 3 L33: 4.7105 L12: 0.3163 REMARK 3 L13: 0.0699 L23: 1.7760 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: -0.1678 S13: -0.1034 REMARK 3 S21: 0.1742 S22: -0.0616 S23: -0.1026 REMARK 3 S31: 0.2466 S32: 0.3262 S33: 0.0203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.498 REMARK 200 RESOLUTION RANGE LOW (A) : 32.857 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0750 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.526 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, DM 5.0, PHENIX, SHELXL-97 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 MG/ML SE-MET REMARK 280 PROTEIN, 0.050 M SODIUM CHLORIDE, 0.003 M SODIUM AZIDE, 0.0003 M REMARK 280 TCEP, BIS-TRIS PH 7.0) MIXED IN A 1:1 RATIO WITH THE WELL REMARK 280 SOLUTION (1% ETHYLENE GLYCOL, 1.8 M AMMONIUM SULFATE, 0.10 M MES REMARK 280 PH 6.0). CRYOPROTECTED IN FOUR STAGES WITH WELL SOLUTION USING 0 REMARK 280 TO 25 % ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.16100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.01950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.16100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.01950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS THE MONOMERIC COMPLEX OF THE PROTEIN REMARK 300 C8ORF32 (CHAIN A) WITH BOUND PEPTIDE (CHAIN L) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 203 REMARK 465 ASN A 204 REMARK 465 CYS A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 364 O HOH A 460 1.99 REMARK 500 O HOH A 383 O HOH A 384 2.01 REMARK 500 O HOH A 415 O HOH A 431 2.10 REMARK 500 O HOH A 309 O HOH A 394 2.12 REMARK 500 O HOH A 315 O HOH A 388 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 -168.77 -166.75 REMARK 500 ARG A 70 72.10 -150.01 REMARK 500 ASP A 73 51.51 -142.07 REMARK 500 LYS A 117 169.78 69.02 REMARK 500 MSE A 173 114.63 -163.89 REMARK 500 ASN A 174 23.13 -143.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.39772 RELATED DB: TARGETDB DBREF 3C9Q A 2 205 UNP Q96HA8 CH032_HUMAN 2 205 DBREF 3C9Q L 1 3 PDB 3C9Q 3C9Q 1 3 SEQADV 3C9Q SER A 1 UNP Q96HA8 EXPRESSION TAG SEQADV 3C9Q VAL A 32 UNP Q96HA8 ILE 32 VARIANT SEQADV 3C9Q SER A 93 UNP Q96HA8 ASN 93 VARIANT SEQADV 3C9Q ILE A 116 UNP Q96HA8 PHE 116 VARIANT SEQADV 3C9Q CYS A 134 UNP Q96HA8 ARG 134 VARIANT SEQRES 1 A 205 SER GLU GLY ASN GLY PRO ALA ALA VAL HIS TYR GLN PRO SEQRES 2 A 205 ALA SER PRO PRO ARG ASP ALA CYS VAL TYR SER SER CYS SEQRES 3 A 205 TYR CYS GLU GLU ASN VAL TRP LYS LEU CYS GLU TYR ILE SEQRES 4 A 205 LYS ASN HIS ASP GLN TYR PRO LEU GLU GLU CYS TYR ALA SEQRES 5 A 205 VAL PHE ILE SER ASN GLU ARG LYS MSE ILE PRO ILE TRP SEQRES 6 A 205 LYS GLN GLN ALA ARG PRO GLY ASP GLY PRO VAL ILE TRP SEQRES 7 A 205 ASP TYR HIS VAL VAL LEU LEU HIS VAL SER SER GLY GLY SEQRES 8 A 205 GLN SER PHE ILE TYR ASP LEU ASP THR VAL LEU PRO PHE SEQRES 9 A 205 PRO CYS LEU PHE ASP THR TYR VAL GLU ASP ALA ILE LYS SEQRES 10 A 205 SER ASP ASP ASP ILE HIS PRO GLN PHE ARG ARG LYS PHE SEQRES 11 A 205 ARG VAL ILE CYS ALA ASP SER TYR LEU LYS ASN PHE ALA SEQRES 12 A 205 SER ASP ARG SER HIS MSE LYS ASP SER SER GLY ASN TRP SEQRES 13 A 205 ARG GLU PRO PRO PRO PRO TYR PRO CYS ILE GLU THR GLY SEQRES 14 A 205 ASP SER LYS MSE ASN LEU ASN ASP PHE ILE SER MSE ASP SEQRES 15 A 205 PRO LYS VAL GLY TRP GLY ALA VAL TYR THR LEU SER GLU SEQRES 16 A 205 PHE THR HIS ARG PHE GLY SER LYS ASN CYS SEQRES 1 L 3 SER THR ALA MODRES 3C9Q MSE A 61 MET SELENOMETHIONINE MODRES 3C9Q MSE A 149 MET SELENOMETHIONINE MODRES 3C9Q MSE A 173 MET SELENOMETHIONINE MODRES 3C9Q MSE A 181 MET SELENOMETHIONINE HET MSE A 61 16 HET MSE A 149 8 HET MSE A 173 8 HET MSE A 181 8 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET SO4 A 209 5 HET SO4 A 210 5 HET CO3 A 211 4 HET EDO A 212 4 HET EDO A 213 4 HET EDO A 214 4 HET EDO A 215 4 HET EDO A 216 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CO3 CARBONATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 CO3 C O3 2- FORMUL 9 EDO 5(C2 H6 O2) FORMUL 14 HOH *272(H2 O) HELIX 1 1 PRO A 17 CYS A 21 5 5 HELIX 2 2 TYR A 27 HIS A 42 1 16 HELIX 3 3 PRO A 46 GLU A 48 5 3 HELIX 4 4 PHE A 108 ALA A 115 1 8 HELIX 5 5 HIS A 123 ARG A 127 5 5 HELIX 6 6 ALA A 135 PHE A 142 1 8 HELIX 7 7 ARG A 146 LYS A 150 5 5 HELIX 8 8 LEU A 175 SER A 180 1 6 HELIX 9 9 LEU A 193 GLY A 201 1 9 SHEET 1 A 6 CYS A 106 LEU A 107 0 SHEET 2 A 6 GLN A 92 TYR A 96 -1 N ILE A 95 O CYS A 106 SHEET 3 A 6 HIS A 81 SER A 88 -1 N LEU A 84 O TYR A 96 SHEET 4 A 6 CYS A 50 SER A 56 -1 N ILE A 55 O HIS A 81 SHEET 5 A 6 LYS A 129 CYS A 134 -1 O ARG A 131 N PHE A 54 SHEET 6 A 6 ALA A 189 THR A 192 -1 O ALA A 189 N VAL A 132 SHEET 1 B 2 ILE A 62 ILE A 64 0 SHEET 2 B 2 VAL A 76 TRP A 78 -1 O TRP A 78 N ILE A 62 LINK C LYS A 60 N AMSE A 61 1555 1555 1.33 LINK C LYS A 60 N BMSE A 61 1555 1555 1.33 LINK C AMSE A 61 N ILE A 62 1555 1555 1.33 LINK C BMSE A 61 N ILE A 62 1555 1555 1.32 LINK C HIS A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N LYS A 150 1555 1555 1.34 LINK C LYS A 172 N MSE A 173 1555 1555 1.34 LINK C MSE A 173 N ASN A 174 1555 1555 1.35 LINK C SER A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N ASP A 182 1555 1555 1.33 CISPEP 1 GLY A 74 PRO A 75 0 3.12 CISPEP 2 PHE A 104 PRO A 105 0 1.76 CISPEP 3 SER A 153 GLY A 154 0 8.38 SITE 1 AC1 3 ARG A 18 PRO A 103 PHE A 104 SITE 1 AC2 5 LYS A 40 ARG A 146 TYR A 163 PRO A 164 SITE 2 AC2 5 CYS A 165 SITE 1 AC3 5 TRP A 65 LYS A 66 GLY A 72 ASP A 73 SITE 2 AC3 5 GLY A 74 SITE 1 AC4 2 LYS A 117 SER A 118 SITE 1 AC5 1 ARG A 127 SITE 1 AC6 2 TYR A 51 ARG A 199 SITE 1 AC7 3 LYS A 60 ASP A 79 ASN A 176 SITE 1 AC8 5 PRO A 16 CYS A 21 LYS A 34 TYR A 38 SITE 2 AC8 5 GLY A 169 SITE 1 AC9 3 TRP A 33 LYS A 34 PRO A 164 SITE 1 BC1 6 LYS A 40 ASN A 41 ARG A 146 TRP A 156 SITE 2 BC1 6 PRO A 160 CYS A 165 SITE 1 BC2 4 HIS A 10 TRP A 65 GLY A 74 LYS A 117 CRYST1 34.322 64.039 113.660 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008798 0.00000 MASTER 527 0 15 9 8 0 15 6 0 0 0 17 END