HEADER SIGNALING PROTEIN 31-JAN-08 3C5H TITLE CRYSTAL STRUCTURE OF THE RAS HOMOLOG DOMAIN OF HUMAN GRLF1 TITLE 2 (P190RHOGAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR DNA-BINDING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RAS HOMOLOG DOMAIN: RESIDUES 13-249; COMPND 5 SYNONYM: GLUCOCORTICOID RECEPTOR REPRESSION FACTOR 1, GRF-1, RHO GAP COMPND 6 P190A, P190-A; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRLF1, GRF1, KIAA1722; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS RAS, GTPASE, GLUCORTICOID RECEPTOR, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, ALTERNATIVE SPLICING, ANTI-ONCOGENE, CELL CYCLE, CYTOPLASM, KEYWDS 3 DNA-BINDING, GTPASE ACTIVATION, NUCLEUS, PHOSPHOPROTEIN, REPRESSOR, KEYWDS 4 TRANSCRIPTION, TRANSCRIPTION REGULATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 3 25-OCT-17 3C5H 1 REMARK REVDAT 2 24-FEB-09 3C5H 1 VERSN REVDAT 1 12-FEB-08 3C5H 0 JRNL AUTH L.SHEN,Y.TONG,W.TEMPEL,F.MACKENZIE,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE RAS HOMOLOG DOMAIN OF HUMAN GRLF1 JRNL TITL 2 (P190RHOGAP). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 26626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1775 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.936 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1869 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1193 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2549 ; 1.465 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2938 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 6.285 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;33.331 ;25.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;11.656 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;25.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2076 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 364 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 352 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1235 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 916 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 915 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.027 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.284 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 18 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 2.720 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 477 ; 0.702 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1876 ; 3.601 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 785 ; 2.861 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 668 ; 3.899 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DUE TO CONSIDERABLE NON-ISOMORPHISM REMARK 3 BETWEEN THE PHASING AND REFINEMENT DATA SETS, A PRELIMINARY REMARK 3 MODEL OBTAINED BY THE PROGRAM 'RESOLVE' BASED ON THE PHASING REMARK 3 DATA WAS USED IN MOLECULAR REPLACEMENT WITH THE HIGHER REMARK 3 RESOLUTION REFINEMENT DATA AND THE PROGRAM 'PHASER'. FOLLOWING REMARK 3 DENSITY MODIFICATION WITH 'DM', 'ARP/WARP' WAS USED FOR REMARK 3 AUTOTRACING OF THE HIGHER RESOLUTION MODEL. HYDROGENS HAVE BEEN REMARK 3 ADDED IN THE RIDING POSITIONS DURING FINAL REFINEMENT. PROGRAMS, REMARK 3 ARP/WARP, COOT, MOLPROBITY HAVE ALSO BEEN USED IN REFINEMENT REMARK 4 REMARK 4 3C5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-07; 06-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 23-ID-B; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926; 0.97931, 0.97945, REMARK 200 0.98166, 0.97243 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; ADSC REMARK 200 QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.13, RESOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATIVE CRYSTAL, USED FOR MODEL REMARK 280 REFINEMENT: 26% PEG 4000, 0.1M TRIS-HCL, 0.2M MAGNESIUM CHLORIDE, REMARK 280 0.1MM DTT, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K. SELENO-METHIONINE DERIVATIVE CRYSTAL, USED FOR MAD PHASING: REMARK 280 33% PEG 4000, 0.1M TRIS-HCL, 0.2M MAGNESIUM CHLORIDE, 0.1MM DTT, REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K. A TEN- REMARK 280 FOLD EXCESS OF GPPNHP WAS ADDED TO THE PROTEIN SAMPLES PRIOR TO REMARK 280 CRYSTALLIZATION. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.47950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.47950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.65950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.47950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.47950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.65950 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.47950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.47950 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.65950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 54.47950 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.47950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.65950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 81 REMARK 465 SER A 82 REMARK 465 LEU A 83 REMARK 465 GLU A 84 REMARK 465 ASP A 85 REMARK 465 CYS A 86 REMARK 465 VAL A 87 REMARK 465 GLU A 88 REMARK 465 CYS A 89 REMARK 465 GLY A 169 REMARK 465 MET A 170 REMARK 465 ASN A 171 REMARK 465 ARG A 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 GLU A 25 CD OE1 OE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLN A 30 CG CD OE1 NE2 REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 109 CD NE CZ NH1 NH2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 GLN A 143 CG CD OE1 NE2 REMARK 470 ASP A 144 CG OD1 OD2 REMARK 470 LYS A 154 CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 ARG A 208 CD NE CZ NH1 NH2 REMARK 470 ARG A 211 CD NE CZ NH1 NH2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 ASN A 222 CG OD1 ND2 REMARK 470 ARG A 231 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 97 -153.89 -139.63 REMARK 500 LEU A 141 39.85 -149.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 36 OG REMARK 620 2 GLU A 95 OE2 83.6 REMARK 620 3 GNP A 301 O2G 175.4 91.8 REMARK 620 4 HOH A 390 O 93.7 94.3 86.6 REMARK 620 5 GNP A 301 O2B 95.8 95.4 84.7 167.2 REMARK 620 6 HOH A 389 O 92.1 174.9 92.5 88.6 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 328 O REMARK 620 2 HOH A 337 O 86.7 REMARK 620 3 HOH A 318 O 97.3 87.6 REMARK 620 4 HOH A 314 O 82.6 89.2 176.8 REMARK 620 5 HOH A 312 O 92.7 179.3 92.6 90.6 REMARK 620 6 HOH A 323 O 170.3 88.5 91.0 88.9 92.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 308 DBREF 3C5H A 13 249 UNP Q9NRY4 GRLF1_HUMAN 13 249 SEQADV 3C5H MET A -5 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A -4 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A -3 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A -2 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A -1 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A 0 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H HIS A 1 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H SER A 2 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H SER A 3 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H GLY A 4 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H ARG A 5 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H GLU A 6 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H ASN A 7 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H LEU A 8 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H TYR A 9 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H PHE A 10 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H GLN A 11 UNP Q9NRY4 EXPRESSION TAG SEQADV 3C5H GLY A 12 UNP Q9NRY4 EXPRESSION TAG SEQRES 1 A 255 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 255 LEU TYR PHE GLN GLY THR TYR ASN ILE SER VAL VAL GLY SEQRES 3 A 255 LEU SER GLY THR GLU LYS GLU LYS GLY GLN CYS GLY ILE SEQRES 4 A 255 GLY LYS SER CYS LEU CYS ASN ARG PHE VAL ARG PRO SER SEQRES 5 A 255 ALA ASP GLU PHE HIS LEU ASP HIS THR SER VAL LEU SER SEQRES 6 A 255 THR SER ASP PHE GLY GLY ARG VAL VAL ASN ASN ASP HIS SEQRES 7 A 255 PHE LEU TYR TRP GLY GLU VAL SER ARG SER LEU GLU ASP SEQRES 8 A 255 CYS VAL GLU CYS LYS MET HIS ILE VAL GLU GLN THR GLU SEQRES 9 A 255 PHE ILE ASP ASP GLN THR PHE GLN PRO HIS ARG SER THR SEQRES 10 A 255 ALA LEU GLN PRO TYR ILE LYS ARG ALA ALA ALA THR LYS SEQRES 11 A 255 LEU ALA SER ALA GLU LYS LEU MET TYR PHE CYS THR ASP SEQRES 12 A 255 GLN LEU GLY LEU GLU GLN ASP PHE GLU GLN LYS GLN MET SEQRES 13 A 255 PRO ASP GLY LYS LEU LEU VAL ASP GLY PHE LEU LEU GLY SEQRES 14 A 255 ILE ASP VAL SER ARG GLY MET ASN ARG ASN PHE ASP ASP SEQRES 15 A 255 GLN LEU LYS PHE VAL SER ASN LEU TYR ASN GLN LEU ALA SEQRES 16 A 255 LYS THR LYS LYS PRO ILE VAL VAL VAL LEU THR LYS CYS SEQRES 17 A 255 ASP GLU GLY VAL GLU ARG TYR ILE ARG ASP ALA HIS THR SEQRES 18 A 255 PHE ALA LEU SER LYS LYS ASN LEU GLN VAL VAL GLU THR SEQRES 19 A 255 SER ALA ARG SER ASN VAL ASN VAL ASP LEU ALA PHE SER SEQRES 20 A 255 THR LEU VAL GLN LEU ILE ASP LYS HET MG A 302 1 HET MG A 303 1 HET GNP A 301 32 HET UNX A 304 1 HET UNX A 305 1 HET UNX A 306 1 HET UNX A 307 1 HET UNX A 308 1 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 MG 2(MG 2+) FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 UNX 5(X) FORMUL 10 HOH *96(H2 O) HELIX 1 1 GLY A 34 ARG A 44 1 11 HELIX 2 2 SER A 59 GLY A 64 1 6 HELIX 3 3 ARG A 109 LEU A 113 5 5 HELIX 4 4 PRO A 115 ALA A 121 1 7 HELIX 5 5 CYS A 135 LEU A 139 5 5 HELIX 6 6 LEU A 141 PHE A 145 5 5 HELIX 7 7 MET A 150 ASP A 152 5 3 HELIX 8 8 ASN A 173 THR A 191 1 19 HELIX 9 9 LYS A 201 GLY A 205 5 5 HELIX 10 10 VAL A 206 SER A 219 1 14 HELIX 11 11 ASN A 235 LYS A 249 1 15 SHEET 1 A 6 PHE A 73 VAL A 79 0 SHEET 2 A 6 MET A 91 GLN A 96 -1 O ILE A 93 N TRP A 76 SHEET 3 A 6 TYR A 14 GLY A 20 1 N VAL A 18 O VAL A 94 SHEET 4 A 6 GLY A 159 ASP A 165 1 O GLY A 163 N VAL A 19 SHEET 5 A 6 ILE A 195 THR A 200 1 O VAL A 196 N LEU A 162 SHEET 6 A 6 VAL A 225 GLU A 227 1 O VAL A 226 N VAL A 197 SHEET 1 B 2 VAL A 57 LEU A 58 0 SHEET 2 B 2 ILE A 100 ASP A 101 1 O ILE A 100 N LEU A 58 SHEET 1 C 2 LYS A 124 ALA A 126 0 SHEET 2 C 2 LYS A 154 LEU A 156 -1 O LEU A 155 N LEU A 125 LINK OG SER A 36 MG MG A 302 1555 1555 2.11 LINK OE2 GLU A 95 MG MG A 302 1555 1555 2.16 LINK MG MG A 302 O2G GNP A 301 1555 1555 1.99 LINK MG MG A 302 O HOH A 390 1555 1555 2.10 LINK MG MG A 302 O2B GNP A 301 1555 1555 2.09 LINK MG MG A 302 O HOH A 389 1555 1555 2.16 LINK MG MG A 303 O HOH A 328 1555 1555 2.11 LINK MG MG A 303 O HOH A 337 1555 1555 2.19 LINK MG MG A 303 O HOH A 318 1555 1555 1.97 LINK MG MG A 303 O HOH A 314 1555 1555 1.96 LINK MG MG A 303 O HOH A 312 1555 1555 2.12 LINK MG MG A 303 O HOH A 323 1555 1555 2.16 SITE 1 AC1 5 SER A 36 GLU A 95 GNP A 301 HOH A 389 SITE 2 AC1 5 HOH A 390 SITE 1 AC2 6 HOH A 312 HOH A 314 HOH A 318 HOH A 323 SITE 2 AC2 6 HOH A 328 HOH A 337 SITE 1 AC3 26 LYS A 28 GLY A 32 ILE A 33 GLY A 34 SITE 2 AC3 26 LYS A 35 SER A 36 CYS A 37 LEU A 52 SITE 3 AC3 26 ASP A 53 SER A 56 GLU A 95 THR A 97 SITE 4 AC3 26 LYS A 201 ASP A 203 SER A 229 ALA A 230 SITE 5 AC3 26 ARG A 231 MG A 302 HOH A 311 HOH A 316 SITE 6 AC3 26 HOH A 319 HOH A 389 HOH A 390 HOH A 394 SITE 7 AC3 26 HOH A 395 HOH A 396 SITE 1 AC4 2 TYR A 116 ILE A 117 SITE 1 AC5 3 VAL A 43 ARG A 44 MET A 132 SITE 1 AC6 3 ASN A 235 ASP A 237 LEU A 238 SITE 1 AC7 2 PHE A 42 ASP A 237 CRYST1 108.959 108.959 51.319 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019486 0.00000 MASTER 396 0 8 11 10 0 15 6 0 0 0 20 END