HEADER TRANSFERASE 15-JAN-08 3BXY TITLE CRYSTAL STRUCTURE OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE FROM TITLE 2 E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- COMPND 3 SUCCINYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE, THP COMPND 6 SUCCINYLTRANSFERASE, TETRAHYDROPICOLINATE SUCCINYLASE; COMPND 7 EC: 2.3.1.117; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 STRAIN: O157:H7; SOURCE 5 GENE: DAPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFO4 KEYWDS LEFT-HANDED BETA-HELIX, STRUCTURAL GENOMICS, CIHR, CANADIAN KEYWDS 2 INSTITUTES OF HEALTH RESEARCH, MONTREAL-KINGSTON BACTERIAL KEYWDS 3 STRUCTURAL GENOMICS INITIATIVE, BSGI, ACYLTRANSFERASE, AMINO-ACID KEYWDS 4 BIOSYNTHESIS, DIAMINOPIMELATE BIOSYNTHESIS, LYSINE BIOSYNTHESIS, KEYWDS 5 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS AUTHOR 2 INITIATIVE (BSGI) REVDAT 4 13-JUL-11 3BXY 1 VERSN REVDAT 3 24-FEB-09 3BXY 1 VERSN REVDAT 2 05-AUG-08 3BXY 1 JRNL REVDAT 1 29-JAN-08 3BXY 0 JRNL AUTH L.NGUYEN,G.KOZLOV,K.GEHRING JRNL TITL STRUCTURE OF ESCHERICHIA COLI TETRAHYDRODIPICOLINATE JRNL TITL 2 N-SUCCINYLTRANSFERASE REVEALS THE ROLE OF A CONSERVED JRNL TITL 3 C-TERMINAL HELIX IN COOPERATIVE SUBSTRATE BINDING. JRNL REF FEBS LETT. V. 582 623 2008 JRNL REFN ISSN 0014-5793 JRNL PMID 18242192 JRNL DOI 10.1016/J.FEBSLET.2008.01.032 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1434 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1934 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.455 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2155 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2922 ; 1.359 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 6.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;36.829 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;14.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.689 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1638 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 976 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1482 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 169 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 0.769 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2192 ; 1.272 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 855 ; 2.057 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 730 ; 3.210 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7830 -4.1310 9.5950 REMARK 3 T TENSOR REMARK 3 T11: .1327 T22: .0623 REMARK 3 T33: .0681 T12: -.0023 REMARK 3 T13: .0333 T23: -.0479 REMARK 3 L TENSOR REMARK 3 L11: .7560 L22: 2.8569 REMARK 3 L33: .4853 L12: .3295 REMARK 3 L13: .1257 L23: .4815 REMARK 3 S TENSOR REMARK 3 S11: .0224 S12: -.0303 S13: .1007 REMARK 3 S21: .0950 S22: -.0407 S23: .0705 REMARK 3 S31: -.1814 S32: .0595 S33: .0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0040 -18.1890 -6.4070 REMARK 3 T TENSOR REMARK 3 T11: .0506 T22: .0167 REMARK 3 T33: .1119 T12: .0112 REMARK 3 T13: -.0069 T23: -.0099 REMARK 3 L TENSOR REMARK 3 L11: .7156 L22: .7714 REMARK 3 L33: 1.8902 L12: .0994 REMARK 3 L13: -.1321 L23: .0761 REMARK 3 S TENSOR REMARK 3 S11: .0021 S12: .0042 S13: .1026 REMARK 3 S21: -.0161 S22: -.0220 S23: .1074 REMARK 3 S31: -.0824 S32: -.0537 S33: .0199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB046095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9772 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TDT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9M TRI-SODIUM CITRATE, 0.1M TRIS- REMARK 280 HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.61450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.61450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.61450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED BY THE THREE- REMARK 300 FOLD SYMMETRY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9990 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 51.46200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -89.13480 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 102.92400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A 262 REMARK 465 LYS A 263 REMARK 465 VAL A 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 359 O HOH A 391 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 274 C ASP A 274 O 0.183 REMARK 500 ASP A 274 C ASP A 274 OXT 0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 -76.88 -105.87 REMARK 500 PRO A 108 38.62 -94.73 REMARK 500 CYS A 149 -3.32 73.97 REMARK 500 SER A 203 -168.76 -77.49 REMARK 500 LYS A 259 11.36 -68.26 REMARK 500 THR A 260 -8.65 -151.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 121 24.7 L L OUTSIDE RANGE REMARK 500 VAL A 167 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TDT RELATED DB: PDB REMARK 900 RELATED ID: 2TDT RELATED DB: PDB REMARK 900 RELATED ID: 3TDT RELATED DB: PDB REMARK 900 RELATED ID: 1KGQ RELATED DB: PDB REMARK 900 RELATED ID: 1KGT RELATED DB: PDB REMARK 900 RELATED ID: DAPD_ECO57 RELATED DB: TARGETDB DBREF 3BXY A 2 274 UNP Q8X8Y7 DAPD_ECO57 2 274 SEQADV 3BXY MET A -10 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY GLY A -9 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY SER A -8 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY SER A -7 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -6 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -5 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -4 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -3 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -2 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY HIS A -1 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY GLY A 0 UNP Q8X8Y7 EXPRESSION TAG SEQADV 3BXY SER A 1 UNP Q8X8Y7 EXPRESSION TAG SEQRES 1 A 285 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER GLN SEQRES 2 A 285 GLN LEU GLN ASN ILE ILE GLU THR ALA PHE GLU ARG ARG SEQRES 3 A 285 ALA GLU ILE THR PRO ALA ASN ALA ASP THR VAL THR ARG SEQRES 4 A 285 GLU ALA VAL ASN GLN VAL ILE ALA LEU LEU ASP SER GLY SEQRES 5 A 285 ALA LEU ARG VAL ALA GLU LYS ILE ASP GLY GLN TRP VAL SEQRES 6 A 285 THR HIS GLN TRP LEU LYS LYS ALA VAL LEU LEU SER PHE SEQRES 7 A 285 ARG ILE ASN ASP ASN GLN VAL ILE GLU GLY ALA GLU SER SEQRES 8 A 285 ARG TYR PHE ASP LYS VAL PRO MET LYS PHE ALA ASP TYR SEQRES 9 A 285 ASP GLU ALA ARG PHE GLN LYS GLU GLY PHE ARG VAL VAL SEQRES 10 A 285 PRO PRO ALA ALA VAL ARG GLN GLY ALA PHE ILE ALA ARG SEQRES 11 A 285 ASN THR VAL LEU MET PRO SER TYR VAL ASN ILE GLY ALA SEQRES 12 A 285 TYR VAL ASP GLU GLY THR MET VAL ASP THR TRP ALA THR SEQRES 13 A 285 VAL GLY SER CYS ALA GLN ILE GLY LYS ASN VAL HIS LEU SEQRES 14 A 285 SER GLY GLY VAL GLY ILE GLY GLY VAL LEU GLU PRO LEU SEQRES 15 A 285 GLN ALA ASN PRO THR ILE ILE GLU ASP ASN CYS PHE ILE SEQRES 16 A 285 GLY ALA ARG SER GLU VAL VAL GLU GLY VAL ILE VAL GLU SEQRES 17 A 285 GLU GLY SER VAL ILE SER MET GLY VAL TYR ILE GLY GLN SEQRES 18 A 285 SER THR ARG ILE TYR ASP ARG GLU THR GLY ASP ILE HIS SEQRES 19 A 285 TYR GLY ARG VAL PRO ALA GLY SER VAL VAL VAL SER GLY SEQRES 20 A 285 ASN LEU PRO SER LYS ASP GLY LYS TYR SER LEU TYR CYS SEQRES 21 A 285 ALA VAL ILE VAL LYS LYS VAL ASP ALA LYS THR ARG GLY SEQRES 22 A 285 LYS VAL GLY ILE ASN GLU LEU LEU ARG THR ILE ASP FORMUL 2 HOH *175(H2 O) HELIX 1 1 GLY A 0 ARG A 14 1 15 HELIX 2 2 ARG A 15 ILE A 18 5 4 HELIX 3 3 ASP A 24 SER A 40 1 17 HELIX 4 4 HIS A 56 ASN A 70 1 15 HELIX 5 5 ASP A 94 GLY A 102 1 9 HELIX 6 6 ASP A 257 ARG A 261 5 5 HELIX 7 7 GLY A 265 THR A 272 1 8 SHEET 1 A 2 ALA A 46 ILE A 49 0 SHEET 2 A 2 GLN A 52 THR A 55 -1 O GLN A 52 N ILE A 49 SHEET 1 B 2 GLN A 73 GLU A 76 0 SHEET 2 B 2 ARG A 81 ASP A 84 -1 O TYR A 82 N ILE A 75 SHEET 1 C10 ARG A 104 VAL A 105 0 SHEET 2 C10 VAL A 122 LEU A 123 1 O LEU A 123 N ARG A 104 SHEET 3 C10 MET A 139 VAL A 140 1 O VAL A 140 N VAL A 122 SHEET 4 C10 HIS A 157 LEU A 158 1 O LEU A 158 N MET A 139 SHEET 5 C10 PHE A 183 ILE A 184 1 O ILE A 184 N HIS A 157 SHEET 6 C10 VAL A 201 ILE A 202 1 O ILE A 202 N PHE A 183 SHEET 7 C10 SER A 231 PRO A 239 1 O VAL A 233 N VAL A 201 SHEET 8 C10 SER A 246 LYS A 255 -1 O LYS A 254 N VAL A 232 SHEET 9 C10 ILE A 214 ASP A 216 1 N TYR A 215 O ALA A 250 SHEET 10 C10 ILE A 222 HIS A 223 -1 O HIS A 223 N ILE A 214 SHEET 1 D 6 ALA A 110 VAL A 111 0 SHEET 2 D 6 SER A 126 VAL A 128 1 O SER A 126 N ALA A 110 SHEET 3 D 6 ALA A 144 VAL A 146 1 O VAL A 146 N TYR A 127 SHEET 4 D 6 GLY A 163 ILE A 164 1 O ILE A 164 N THR A 145 SHEET 5 D 6 GLU A 189 VAL A 190 1 O VAL A 190 N GLY A 163 SHEET 6 D 6 TYR A 207 ILE A 208 1 O ILE A 208 N GLU A 189 SHEET 1 E 6 PHE A 116 ILE A 117 0 SHEET 2 E 6 TYR A 133 VAL A 134 1 O VAL A 134 N PHE A 116 SHEET 3 E 6 GLN A 151 ILE A 152 1 O ILE A 152 N TYR A 133 SHEET 4 E 6 ILE A 177 ILE A 178 1 O ILE A 178 N GLN A 151 SHEET 5 E 6 ILE A 195 VAL A 196 1 O VAL A 196 N ILE A 177 SHEET 6 E 6 ARG A 226 VAL A 227 1 O VAL A 227 N ILE A 195 CISPEP 1 PRO A 107 PRO A 108 0 0.71 CISPEP 2 GLU A 169 PRO A 170 0 -1.38 CRYST1 102.924 102.924 69.229 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009716 0.005609 0.000000 0.00000 SCALE2 0.000000 0.011219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014445 0.00000 MASTER 389 0 0 7 26 0 0 6 0 0 0 22 END