HEADER SIGNALING PROTEIN 28-NOV-07 3BH7 TITLE CRYSTAL STRUCTURE OF THE RP2-ARL3 COMPLEX BOUND TO GDP-ALF4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 14-177; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN XRP2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ARL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T5-TEV; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RP2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS PROTEIN-PROTEIN COMPLEX, GTPASE ACTIVATING PROTEIN AND GTPASE, KEYWDS 2 RETINITIS PIGMENTOSA, GTP-BINDING, LIPOPROTEIN, MYRISTATE, KEYWDS 3 NUCLEOTIDE-BINDING, DISEASE MUTATION, MEMBRANE, PALMITATE, KEYWDS 4 PHOSPHOPROTEIN, SENSORY TRANSDUCTION, VISION, METAL BINDING PROTEIN, KEYWDS 5 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.VELTEL,R.GASPER,A.WITTINGHOFER REVDAT 3 05-MAR-14 3BH7 1 JRNL VERSN REVDAT 2 24-FEB-09 3BH7 1 VERSN REVDAT 1 25-MAR-08 3BH7 0 JRNL AUTH S.VELTEL,R.GASPER,E.EISENACHER,A.WITTINGHOFER JRNL TITL THE RETINITIS PIGMENTOSA 2 GENE PRODUCT IS A JRNL TITL 2 GTPASE-ACTIVATING PROTEIN FOR ARF-LIKE 3 JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 373 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18376416 JRNL DOI 10.1038/NSMB.1396 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2228 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3066 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3745 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3873 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5254 ; 1.175 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 7.251 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;37.021 ;24.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;15.355 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.569 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2918 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1834 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2663 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 241 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.069 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2455 ; 0.528 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3840 ; 0.879 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1633 ; 1.108 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1411 ; 1.742 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB045516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 20.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32300 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KSG, 2BX6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.4M POTASSIUM CHLORIDE, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.84900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.95900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.97150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.95900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.84900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.97150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 CYS B 3 REMARK 465 PHE B 4 REMARK 465 PHE B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 ARG B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 ALA B 11 REMARK 465 ASP B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 ARG B 16 REMARK 465 PRO B 17 REMARK 465 GLU B 18 REMARK 465 ASN B 19 REMARK 465 GLU B 20 REMARK 465 GLU B 21 REMARK 465 GLU B 22 REMARK 465 ARG B 23 REMARK 465 PRO B 24 REMARK 465 LYS B 25 REMARK 465 GLN B 26 REMARK 465 TYR B 27 REMARK 465 SER B 28 REMARK 465 TRP B 29 REMARK 465 ASP B 30 REMARK 465 GLN B 31 REMARK 465 ARG B 32 REMARK 465 GLU B 33 REMARK 465 LYS B 34 REMARK 465 VAL B 35 REMARK 465 ASP B 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 AL ALF A 3 O3B GDP A 2 1.91 REMARK 500 AL ALF A 3 O HOH A 179 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 38 44.48 151.10 REMARK 500 ASP B 39 28.11 -65.77 REMARK 500 ARG B 282 -123.38 51.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 38 ASP B 39 126.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE B 74 20.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 31 OG1 REMARK 620 2 THR A 48 OG1 88.1 REMARK 620 3 GDP A 2 O2B 94.4 177.3 REMARK 620 4 HOH A 178 O 90.5 88.8 90.3 REMARK 620 5 HOH A 180 O 85.5 90.0 91.1 175.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BX6 RELATED DB: PDB REMARK 900 STRUCTURE OF RP2 ALONE REMARK 900 RELATED ID: 3BH6 RELATED DB: PDB DBREF 3BH7 A 17 177 UNP Q9WUL7 ARL3_MOUSE 17 177 DBREF 3BH7 B 1 350 UNP O75695 XRP2_HUMAN 1 350 SEQADV 3BH7 GLY A 14 UNP Q9WUL7 EXPRESSION TAG SEQADV 3BH7 GLY A 15 UNP Q9WUL7 EXPRESSION TAG SEQADV 3BH7 SER A 16 UNP Q9WUL7 EXPRESSION TAG SEQADV 3BH7 GLY B -1 UNP O75695 EXPRESSION TAG SEQADV 3BH7 SER B 0 UNP O75695 EXPRESSION TAG SEQRES 1 A 164 GLY GLY SER GLU VAL ARG ILE LEU LEU LEU GLY LEU ASP SEQRES 2 A 164 ASN ALA GLY LYS THR THR LEU LEU LYS GLN LEU ALA SER SEQRES 3 A 164 GLU ASP ILE SER HIS ILE THR PRO THR GLN GLY PHE ASN SEQRES 4 A 164 ILE LYS SER VAL GLN SER GLN GLY PHE LYS LEU ASN VAL SEQRES 5 A 164 TRP ASP ILE GLY GLY GLN ARG LYS ILE ARG PRO TYR TRP SEQRES 6 A 164 ARG SER TYR PHE GLU ASN THR ASP ILE LEU ILE TYR VAL SEQRES 7 A 164 ILE ASP SER ALA ASP ARG LYS ARG PHE GLU GLU THR GLY SEQRES 8 A 164 GLN GLU LEU THR GLU LEU LEU GLU GLU GLU LYS LEU SER SEQRES 9 A 164 CYS VAL PRO VAL LEU ILE PHE ALA ASN LYS GLN ASP LEU SEQRES 10 A 164 LEU THR ALA ALA PRO ALA SER GLU ILE ALA GLU GLY LEU SEQRES 11 A 164 ASN LEU HIS THR ILE ARG ASP ARG VAL TRP GLN ILE GLN SEQRES 12 A 164 SER CYS SER ALA LEU THR GLY GLU GLY VAL GLN ASP GLY SEQRES 13 A 164 MET ASN TRP VAL CYS LYS ASN VAL SEQRES 1 B 352 GLY SER MET GLY CYS PHE PHE SER LYS ARG ARG LYS ALA SEQRES 2 B 352 ASP LYS GLU SER ARG PRO GLU ASN GLU GLU GLU ARG PRO SEQRES 3 B 352 LYS GLN TYR SER TRP ASP GLN ARG GLU LYS VAL ASP PRO SEQRES 4 B 352 LYS ASP TYR MET PHE SER GLY LEU LYS ASP GLU THR VAL SEQRES 5 B 352 GLY ARG LEU PRO GLY THR VAL ALA GLY GLN GLN PHE LEU SEQRES 6 B 352 ILE GLN ASP CYS GLU ASN CYS ASN ILE TYR ILE PHE ASP SEQRES 7 B 352 HIS SER ALA THR VAL THR ILE ASP ASP CYS THR ASN CYS SEQRES 8 B 352 ILE ILE PHE LEU GLY PRO VAL LYS GLY SER VAL PHE PHE SEQRES 9 B 352 ARG ASN CYS ARG ASP CYS LYS CYS THR LEU ALA CYS GLN SEQRES 10 B 352 GLN PHE ARG VAL ARG ASP CYS ARG LYS LEU GLU VAL PHE SEQRES 11 B 352 LEU CYS CYS ALA THR GLN PRO ILE ILE GLU SER SER SER SEQRES 12 B 352 ASN ILE LYS PHE GLY CYS PHE GLN TRP TYR TYR PRO GLU SEQRES 13 B 352 LEU ALA PHE GLN PHE LYS ASP ALA GLY LEU SER ILE PHE SEQRES 14 B 352 ASN ASN THR TRP SER ASN ILE HIS ASP PHE THR PRO VAL SEQRES 15 B 352 SER GLY GLU LEU ASN TRP SER LEU LEU PRO GLU ASP ALA SEQRES 16 B 352 VAL VAL GLN ASP TYR VAL PRO ILE PRO THR THR GLU GLU SEQRES 17 B 352 LEU LYS ALA VAL ARG VAL SER THR GLU ALA ASN ARG SER SEQRES 18 B 352 ILE VAL PRO ILE SER ARG GLY GLN ARG GLN LYS SER SER SEQRES 19 B 352 ASP GLU SER CYS LEU VAL VAL LEU PHE ALA GLY ASP TYR SEQRES 20 B 352 THR ILE ALA ASN ALA ARG LYS LEU ILE ASP GLU MET VAL SEQRES 21 B 352 GLY LYS GLY PHE PHE LEU VAL GLN THR LYS GLU VAL SER SEQRES 22 B 352 MET LYS ALA GLU ASP ALA GLN ARG VAL PHE ARG GLU LYS SEQRES 23 B 352 ALA PRO ASP PHE LEU PRO LEU LEU ASN LYS GLY PRO VAL SEQRES 24 B 352 ILE ALA LEU GLU PHE ASN GLY ASP GLY ALA VAL GLU VAL SEQRES 25 B 352 CYS GLN LEU ILE VAL ASN GLU ILE PHE ASN GLY THR LYS SEQRES 26 B 352 MET PHE VAL SER GLU SER LYS GLU THR ALA SER GLY ASP SEQRES 27 B 352 VAL ASP SER PHE TYR ASN PHE ALA ASP ILE GLN MET GLY SEQRES 28 B 352 ILE HET MG A 1 1 HET ALF A 3 5 HET GDP A 2 28 HETNAM MG MAGNESIUM ION HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 ALF AL F4 1- FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 HOH *219(H2 O) HELIX 1 1 GLY A 29 ALA A 38 1 10 HELIX 2 2 GLN A 71 PHE A 82 5 12 HELIX 3 3 ASP A 96 LYS A 98 5 3 HELIX 4 4 ARG A 99 GLU A 112 1 14 HELIX 5 5 GLU A 113 SER A 117 5 5 HELIX 6 6 PRO A 135 LEU A 143 1 9 HELIX 7 7 ASN A 144 ILE A 148 5 5 HELIX 8 8 GLY A 165 ASN A 176 1 12 HELIX 9 9 GLU B 154 ALA B 162 1 9 HELIX 10 10 VAL B 194 TYR B 198 5 5 HELIX 11 11 THR B 204 LYS B 208 5 5 HELIX 12 12 TYR B 245 LYS B 260 1 16 HELIX 13 13 LYS B 273 ARG B 282 1 10 HELIX 14 14 GLU B 283 GLY B 295 5 13 HELIX 15 15 GLY B 306 PHE B 319 1 14 HELIX 16 16 SER B 329 GLY B 349 1 21 SHEET 1 A 6 PHE A 51 SER A 58 0 SHEET 2 A 6 PHE A 61 ILE A 68 -1 O LEU A 63 N VAL A 56 SHEET 3 A 6 VAL A 18 GLY A 24 1 N VAL A 18 O ASN A 64 SHEET 4 A 6 ILE A 87 ASP A 93 1 O VAL A 91 N LEU A 23 SHEET 5 A 6 VAL A 121 ASN A 126 1 O LEU A 122 N TYR A 90 SHEET 6 A 6 TRP A 153 SER A 157 1 O GLN A 154 N ILE A 123 SHEET 1 B 7 MET B 41 SER B 43 0 SHEET 2 B 7 PHE B 62 GLN B 65 1 O GLN B 65 N PHE B 42 SHEET 3 B 7 VAL B 81 ASP B 84 1 O ASP B 84 N ILE B 64 SHEET 4 B 7 ILE B 90 ARG B 103 1 O ARG B 103 N ILE B 83 SHEET 5 B 7 ARG B 106 ARG B 120 1 O ARG B 118 N VAL B 100 SHEET 6 B 7 ILE B 136 GLU B 138 1 O ILE B 136 N PHE B 117 SHEET 7 B 7 HIS B 175 ASP B 176 1 O HIS B 175 N ILE B 137 SHEET 1 C 7 THR B 49 ARG B 52 0 SHEET 2 C 7 ASN B 71 ILE B 74 1 O ASN B 71 N VAL B 50 SHEET 3 C 7 ILE B 90 ARG B 103 1 O ILE B 90 N ILE B 72 SHEET 4 C 7 ARG B 106 ARG B 120 1 O ARG B 118 N VAL B 100 SHEET 5 C 7 ARG B 123 CYS B 131 1 O GLU B 126 N CYS B 110 SHEET 6 C 7 SER B 141 CYS B 147 1 O GLY B 146 N LEU B 129 SHEET 7 C 7 TRP B 186 LEU B 188 1 O SER B 187 N PHE B 145 SHEET 1 D 4 PHE B 263 VAL B 270 0 SHEET 2 D 4 VAL B 297 ASN B 303 -1 O GLU B 301 N VAL B 265 SHEET 3 D 4 SER B 235 LEU B 240 -1 N LEU B 240 O ILE B 298 SHEET 4 D 4 MET B 324 VAL B 326 -1 O PHE B 325 N VAL B 239 LINK OG1 THR A 31 MG MG A 1 1555 1555 2.04 LINK OG1 THR A 48 MG MG A 1 1555 1555 2.05 LINK MG MG A 1 O2B GDP A 2 1555 1555 2.06 LINK MG MG A 1 O HOH A 178 1555 1555 2.12 LINK MG MG A 1 O HOH A 180 1555 1555 2.14 SITE 1 AC1 4 THR A 31 THR A 48 HOH A 178 HOH A 180 SITE 1 AC2 11 ASP A 26 ASN A 27 LYS A 30 PRO A 47 SITE 2 AC2 11 THR A 48 GLY A 70 GLN A 71 HOH A 178 SITE 3 AC2 11 HOH A 179 HOH A 180 ARG B 118 SITE 1 AC3 26 ASN A 27 ALA A 28 GLY A 29 LYS A 30 SITE 2 AC3 26 THR A 31 THR A 32 ILE A 45 ASN A 126 SITE 3 AC3 26 LYS A 127 ASP A 129 LEU A 130 SER A 159 SITE 4 AC3 26 ALA A 160 LEU A 161 HOH A 178 HOH A 180 SITE 5 AC3 26 HOH A 185 HOH A 193 HOH A 224 HOH A 242 SITE 6 AC3 26 GLY B 98 SER B 99 GLN B 115 GLN B 116 SITE 7 AC3 26 ARG B 118 HOH B 403 CRYST1 73.698 77.943 97.918 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010213 0.00000 MASTER 379 0 3 16 24 0 11 6 0 0 0 41 END