HEADER UNKNOWN FUNCTION 14-NOV-07 3BDE TITLE CRYSTAL STRUCTURE OF A DABB FAMILY PROTEIN WITH A FERREDOXIN-LIKE FOLD TITLE 2 (MLL5499) FROM MESORHIZOBIUM LOTI MAFF303099 AT 1.79 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLL5499 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: NP_106155.1, MLL5499; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRESS RESPONSIVE A/B BARREL DOMAIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JUL-19 3BDE 1 REMARK LINK REVDAT 5 25-OCT-17 3BDE 1 REMARK REVDAT 4 13-JUL-11 3BDE 1 VERSN REVDAT 3 23-MAR-11 3BDE 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BDE 1 VERSN REVDAT 1 27-NOV-07 3BDE 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DOMAIN OF UNKNOWN FUNCTION WITH A JRNL TITL 2 FERREDOXIN-LIKE FOLD (NP_106155.1) FROM MESORHIZOBIUM LOTI JRNL TITL 3 AT 1.79 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 20637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.341 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1774 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1257 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2379 ; 1.620 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3020 ; 1.269 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 4.245 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;34.502 ;22.747 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 289 ;10.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;26.582 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1930 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 397 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 302 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1185 ; 0.145 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 830 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 888 ; 0.075 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.093 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1142 ; 1.935 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 400 ; 0.447 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1648 ; 2.547 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 829 ; 4.360 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 725 ; 5.631 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6867 8.2702 4.6276 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: -0.0377 REMARK 3 T33: -0.0246 T12: 0.0056 REMARK 3 T13: 0.0044 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.1542 L22: 0.3371 REMARK 3 L33: 0.6349 L12: -0.1290 REMARK 3 L13: 0.3046 L23: -0.0801 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0020 S13: -0.0334 REMARK 3 S21: 0.0297 S22: -0.0094 S23: -0.0162 REMARK 3 S31: 0.0056 S32: 0.0150 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8215 0.6863 27.7820 REMARK 3 T TENSOR REMARK 3 T11: -0.0128 T22: -0.0178 REMARK 3 T33: -0.0211 T12: 0.0041 REMARK 3 T13: 0.0048 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.6332 L22: 0.4326 REMARK 3 L33: 1.0319 L12: -0.0390 REMARK 3 L13: 0.6147 L23: -0.0896 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: -0.0220 S13: -0.0163 REMARK 3 S21: 0.0399 S22: 0.0235 S23: 0.0252 REMARK 3 S31: 0.0054 S32: -0.0101 S33: -0.0177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. RESIDUES 98-101 ARE DISORDERED AND NOT INCLUDED IN THE MODEL. REMARK 3 5. ACT AND EDO MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION REMARK 3 ARE MODELED. REMARK 4 REMARK 4 3BDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537, 0.9797, 0.9796 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 29.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : 0.46500 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NA ACETATE, 20.0% PEG REMARK 280 3350, NO BUFFER PH 7.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.33450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.20750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.33450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.20750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 82.78800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.11200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 157 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 208 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 SER A 99 REMARK 465 VAL A 100 REMARK 465 VAL A 101 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 99 REMARK 465 VAL B 100 REMARK 465 VAL B 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CE NZ REMARK 470 ARG A 34 CZ NH1 NH2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLY A 98 C O REMARK 470 LYS B 20 CE NZ REMARK 470 LYS B 28 CD CE NZ REMARK 470 ARG B 34 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 81 -51.55 -121.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 378291 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3BDE A 1 101 UNP Q98BN1 Q98BN1_RHILO 1 101 DBREF 3BDE B 1 101 UNP Q98BN1 Q98BN1_RHILO 1 101 SEQADV 3BDE MSE A -18 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE GLY A -17 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE SER A -16 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE ASP A -15 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE LYS A -14 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE ILE A -13 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS A -12 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS A -11 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS A -10 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS A -9 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS A -8 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS A -7 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE GLU A -6 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE ASN A -5 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE LEU A -4 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE TYR A -3 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE PHE A -2 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE GLN A -1 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE GLY A 0 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE MSE B -18 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE GLY B -17 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE SER B -16 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE ASP B -15 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE LYS B -14 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE ILE B -13 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS B -12 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS B -11 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS B -10 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS B -9 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS B -8 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE HIS B -7 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE GLU B -6 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE ASN B -5 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE LEU B -4 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE TYR B -3 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE PHE B -2 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE GLN B -1 UNP Q98BN1 LEADER SEQUENCE SEQADV 3BDE GLY B 0 UNP Q98BN1 LEADER SEQUENCE SEQRES 1 A 120 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 120 ASN LEU TYR PHE GLN GLY MSE ILE ARG HIS THR VAL VAL SEQRES 3 A 120 PHE THR LEU LYS HIS ALA SER HIS SER LEU GLU GLU LYS SEQRES 4 A 120 ARG PHE LEU VAL ASP ALA LYS LYS ILE LEU SER ALA ILE SEQRES 5 A 120 ARG GLY VAL THR HIS PHE GLU GLN LEU ARG GLN ILE SER SEQRES 6 A 120 PRO LYS ILE ASP TYR HIS PHE GLY PHE SER MSE GLU PHE SEQRES 7 A 120 ALA ASP GLN ALA ALA TYR THR ARG TYR ASN ASP HIS PRO SEQRES 8 A 120 ASP HIS VAL ALA PHE VAL ARG ASP ARG TRP VAL PRO GLU SEQRES 9 A 120 VAL GLU LYS PHE LEU GLU ILE ASP TYR VAL PRO LEU GLY SEQRES 10 A 120 SER VAL VAL SEQRES 1 B 120 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 120 ASN LEU TYR PHE GLN GLY MSE ILE ARG HIS THR VAL VAL SEQRES 3 B 120 PHE THR LEU LYS HIS ALA SER HIS SER LEU GLU GLU LYS SEQRES 4 B 120 ARG PHE LEU VAL ASP ALA LYS LYS ILE LEU SER ALA ILE SEQRES 5 B 120 ARG GLY VAL THR HIS PHE GLU GLN LEU ARG GLN ILE SER SEQRES 6 B 120 PRO LYS ILE ASP TYR HIS PHE GLY PHE SER MSE GLU PHE SEQRES 7 B 120 ALA ASP GLN ALA ALA TYR THR ARG TYR ASN ASP HIS PRO SEQRES 8 B 120 ASP HIS VAL ALA PHE VAL ARG ASP ARG TRP VAL PRO GLU SEQRES 9 B 120 VAL GLU LYS PHE LEU GLU ILE ASP TYR VAL PRO LEU GLY SEQRES 10 B 120 SER VAL VAL MODRES 3BDE MSE A 1 MET SELENOMETHIONINE MODRES 3BDE MSE A 57 MET SELENOMETHIONINE MODRES 3BDE MSE B 1 MET SELENOMETHIONINE MODRES 3BDE MSE B 57 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 57 8 HET MSE B 1 8 HET MSE B 57 8 HET ACT A 102 4 HET EDO A 103 4 HET EDO A 104 4 HET EDO A 105 4 HET EDO A 106 4 HET EDO A 107 4 HET EDO A 108 4 HET EDO A 109 4 HET EDO A 110 4 HET EDO B 102 4 HET EDO B 103 4 HET EDO B 104 4 HET EDO B 105 4 HET EDO B 106 4 HET EDO B 107 4 HET EDO B 108 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 EDO 15(C2 H6 O2) FORMUL 19 HOH *253(H2 O) HELIX 1 1 SER A 16 ALA A 32 1 17 HELIX 2 2 ASP A 61 ASP A 70 1 10 HELIX 3 3 HIS A 71 ARG A 81 1 11 HELIX 4 4 ARG A 81 GLU A 85 1 5 HELIX 5 5 SER B 16 ALA B 32 1 17 HELIX 6 6 ASP B 61 ASP B 70 1 10 HELIX 7 7 HIS B 71 ARG B 81 1 11 HELIX 8 8 ARG B 81 GLU B 85 1 5 SHEET 1 A 4 THR A 37 ARG A 43 0 SHEET 2 A 4 PHE A 53 PHE A 59 -1 O SER A 56 N GLU A 40 SHEET 3 A 4 ILE A 2 LEU A 10 -1 N PHE A 8 O PHE A 53 SHEET 4 A 4 VAL A 86 TYR A 94 -1 O TYR A 94 N ARG A 3 SHEET 1 B 4 THR B 37 ARG B 43 0 SHEET 2 B 4 PHE B 53 PHE B 59 -1 O GLY B 54 N LEU B 42 SHEET 3 B 4 ILE B 2 LEU B 10 -1 N PHE B 8 O PHE B 53 SHEET 4 B 4 VAL B 86 TYR B 94 -1 O TYR B 94 N ARG B 3 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ILE A 2 1555 1555 1.34 LINK C SER A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N GLU A 58 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C SER B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N GLU B 58 1555 1555 1.33 SITE 1 AC1 5 MSE A 1 THR A 37 HIS A 38 GLU A 58 SITE 2 AC1 5 ALA A 60 SITE 1 AC2 5 HIS B 4 TYR B 68 HIS B 74 VAL B 78 SITE 2 AC2 5 EDO B 106 SITE 1 AC3 5 HIS A 4 TYR A 68 HIS A 74 VAL A 78 SITE 2 AC3 5 EDO A 108 SITE 1 AC4 8 THR B 37 HIS B 38 LYS B 48 LYS B 88 SITE 2 AC4 8 PHE B 89 HOH B 145 HOH B 156 HOH B 187 SITE 1 AC5 6 GLN A 62 TYR A 65 THR A 66 ASN A 69 SITE 2 AC5 6 ALA B 63 HOH B 174 SITE 1 AC6 4 ASN B 69 HIS B 74 HOH B 116 HOH B 226 SITE 1 AC7 7 THR A 37 HIS A 38 LYS A 88 PHE A 89 SITE 2 AC7 7 HOH A 167 HOH A 218 HOH A 229 SITE 1 AC8 5 GLU A 18 ARG A 21 HOH A 148 ARG B 21 SITE 2 AC8 5 ARG B 81 SITE 1 AC9 5 PRO A 84 PRO B 72 ASP B 73 HOH B 119 SITE 2 AC9 5 HOH B 216 SITE 1 BC1 5 ASP A 80 HOH A 170 PRO B 72 VAL B 75 SITE 2 BC1 5 ARG B 79 SITE 1 BC2 5 VAL A 6 VAL A 78 TRP A 82 GLU A 91 SITE 2 BC2 5 EDO A 103 SITE 1 BC3 6 VAL B 6 TRP B 82 GLU B 91 EDO B 102 SITE 2 BC3 6 HOH B 226 HOH B 227 SITE 1 BC4 4 THR B 5 ILE B 92 TYR B 94 HOH B 208 SITE 1 BC5 4 ARG A 67 GLN B 62 TYR B 65 THR B 66 SITE 1 BC6 3 THR A 5 TYR A 94 HOH A 216 SITE 1 BC7 3 ASN A 69 HIS A 74 HOH A 131 CRYST1 118.669 28.415 76.985 90.00 117.78 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008427 0.000000 0.004440 0.00000 SCALE2 0.000000 0.035193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014682 0.00000 MASTER 463 0 20 8 8 0 27 6 0 0 0 20 END