HEADER TRANSFERASE 19-OCT-07 3B33 TITLE CRYSTAL STRUCTURE OF THE PAS DOMAIN OF NITROGEN REGULATION PROTEIN TITLE 2 NR(II) FROM VIBRIO PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PAS DOMAIN: RESIDUES 1-112; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633 / SEROTYPE O3:K6; SOURCE 5 GENE: VP0119; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PAS DOMAIN, NITROGEN REGULATION PROTEIN, KEYWDS 2 APC91440.4, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, KINASE, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,A.SATHER,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-OCT-17 3B33 1 REMARK REVDAT 3 13-JUL-11 3B33 1 VERSN REVDAT 2 24-FEB-09 3B33 1 VERSN REVDAT 1 30-OCT-07 3B33 0 JRNL AUTH J.OSIPIUK,A.SATHER,J.ABDULLAH,A.JOACHIMIAK JRNL TITL X-RAY STRUCTURE OF PAS DOMAIN OF NITROGEN REGULATION PROTEIN JRNL TITL 2 NR(II) FROM VIBRIO PARAHAEMOLYTICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 11938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 566 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 727 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 936 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1300 ; 1.780 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 135 ; 6.496 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;44.231 ;25.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 182 ;17.216 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 680 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 421 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 663 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 65 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.290 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 608 ; 1.194 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 985 ; 1.974 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 357 ; 2.279 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 300 ; 3.449 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0652 29.6684 6.6962 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0824 REMARK 3 T33: 0.0482 T12: 0.0095 REMARK 3 T13: -0.0903 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.3286 L22: 0.9307 REMARK 3 L33: 2.3028 L12: -0.5289 REMARK 3 L13: 0.5247 L23: -0.5038 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: 0.0615 S13: 0.0292 REMARK 3 S21: 0.0527 S22: -0.0063 S23: -0.0885 REMARK 3 S31: -0.1610 S32: 0.0032 S33: 0.0379 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3378 27.6890 12.9183 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0576 REMARK 3 T33: -0.1293 T12: 0.0038 REMARK 3 T13: 0.0727 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 9.7219 L22: 30.9510 REMARK 3 L33: 14.4818 L12: -6.7434 REMARK 3 L13: -0.9129 L23: -9.4016 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -0.6625 S13: -0.2476 REMARK 3 S21: 1.1903 S22: 0.5271 S23: 0.9285 REMARK 3 S31: -1.0310 S32: -0.0650 S33: -0.5118 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9658 30.8035 19.1129 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.0473 REMARK 3 T33: -0.0804 T12: 0.0755 REMARK 3 T13: -0.0079 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 27.9516 L22: 10.6586 REMARK 3 L33: 18.4075 L12: -14.9551 REMARK 3 L13: 10.5529 L23: 0.5445 REMARK 3 S TENSOR REMARK 3 S11: -0.8340 S12: -1.4893 S13: 0.1680 REMARK 3 S21: 0.3876 S22: 0.6190 S23: -0.1747 REMARK 3 S31: -1.2053 S32: -1.4854 S33: 0.2150 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9814 15.7990 18.0837 REMARK 3 T TENSOR REMARK 3 T11: -0.0918 T22: 0.0859 REMARK 3 T33: -0.0280 T12: -0.0264 REMARK 3 T13: -0.0633 T23: 0.1852 REMARK 3 L TENSOR REMARK 3 L11: 2.1052 L22: 3.8488 REMARK 3 L33: 10.0338 L12: -2.8433 REMARK 3 L13: 0.8250 L23: -0.8235 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: -0.4913 S13: -0.2093 REMARK 3 S21: 0.0655 S22: 0.3737 S23: 0.0525 REMARK 3 S31: -0.0964 S32: -0.4429 S33: -0.2464 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9666 13.8858 7.1582 REMARK 3 T TENSOR REMARK 3 T11: -0.0995 T22: -0.0458 REMARK 3 T33: 0.0348 T12: 0.0760 REMARK 3 T13: -0.0854 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 46.6972 L22: 11.3526 REMARK 3 L33: 16.9788 L12: 7.8922 REMARK 3 L13: -18.9948 L23: 1.2052 REMARK 3 S TENSOR REMARK 3 S11: 0.4740 S12: -0.9681 S13: -1.0721 REMARK 3 S21: -0.1021 S22: 0.1248 S23: -0.7442 REMARK 3 S31: 0.9188 S32: 0.5521 S33: -0.5987 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5457 11.3490 4.6686 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: -0.0667 REMARK 3 T33: 0.0699 T12: -0.0492 REMARK 3 T13: -0.1822 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 31.2322 L22: 9.5577 REMARK 3 L33: 6.3106 L12: 11.9619 REMARK 3 L13: -9.3666 L23: 0.3835 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.3022 S13: -1.3278 REMARK 3 S21: -0.5708 S22: -0.1057 S23: 0.0564 REMARK 3 S31: 0.9136 S32: -0.2518 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4774 16.9391 17.2552 REMARK 3 T TENSOR REMARK 3 T11: -0.1228 T22: 0.3431 REMARK 3 T33: -0.0264 T12: 0.0520 REMARK 3 T13: -0.0453 T23: 0.3663 REMARK 3 L TENSOR REMARK 3 L11: 9.3915 L22: 16.6983 REMARK 3 L33: 26.0481 L12: -2.5825 REMARK 3 L13: -10.9396 L23: 5.2257 REMARK 3 S TENSOR REMARK 3 S11: 0.3953 S12: -0.3940 S13: -0.5856 REMARK 3 S21: 0.4615 S22: 0.4366 S23: 1.2115 REMARK 3 S31: -1.1203 S32: -1.8430 S33: -0.8319 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3036 23.1130 6.1325 REMARK 3 T TENSOR REMARK 3 T11: -0.0095 T22: 0.0938 REMARK 3 T33: 0.1594 T12: -0.0531 REMARK 3 T13: -0.0701 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 19.4758 L22: 1.6609 REMARK 3 L33: 3.0185 L12: 1.5443 REMARK 3 L13: 0.2393 L23: -2.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.1121 S12: -0.3921 S13: 1.4747 REMARK 3 S21: 0.0069 S22: -0.1994 S23: 0.0856 REMARK 3 S31: 0.1318 S32: 0.3463 S33: 0.0873 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9840 20.8690 6.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0659 REMARK 3 T33: 0.0205 T12: -0.0232 REMARK 3 T13: -0.0688 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 9.3785 L22: 1.7929 REMARK 3 L33: 2.8255 L12: 1.6023 REMARK 3 L13: 5.1071 L23: 0.6127 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: -0.1676 S13: -0.1052 REMARK 3 S21: 0.0160 S22: 0.1073 S23: -0.1093 REMARK 3 S31: 0.0012 S32: -0.0859 S33: -0.0391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000045017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 35.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 3 M SODIUM REMARK 280 CHLORIDE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.73350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.73350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.73350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.73350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.73350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.73350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 115 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 120 O HOH A 176 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 46 OE2 GLU A 46 10665 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 -0.32 70.79 REMARK 500 ASP A 83 52.66 33.60 REMARK 500 ASP A 83 50.21 36.35 REMARK 500 ARG A 100 24.53 47.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC91440.4 RELATED DB: TARGETDB DBREF 3B33 A 1 112 UNP Q87TF0 Q87TF0_VIBPA 1 112 SEQADV 3B33 SER A -2 UNP Q87TF0 EXPRESSION TAG SEQADV 3B33 ASN A -1 UNP Q87TF0 EXPRESSION TAG SEQADV 3B33 ALA A 0 UNP Q87TF0 EXPRESSION TAG SEQRES 1 A 115 SER ASN ALA MSE ASP THR SER LEU PRO SER ALA ILE LEU SEQRES 2 A 115 ASN ASN MSE VAL THR ALA THR LEU ILE LEU ASP ASP GLY SEQRES 3 A 115 LEU ALA ILE ARG TYR ALA ASN PRO ALA ALA GLU LEU LEU SEQRES 4 A 115 PHE SER GLN SER ALA LYS ARG ILE VAL GLU GLN SER LEU SEQRES 5 A 115 SER GLN LEU ILE GLN HIS ALA SER LEU ASP LEU ALA LEU SEQRES 6 A 115 LEU THR GLN PRO LEU GLN SER GLY GLN SER ILE THR ASP SEQRES 7 A 115 SER ASP VAL THR PHE VAL VAL ASP GLY ARG PRO LEU MSE SEQRES 8 A 115 LEU GLU VAL THR VAL SER PRO ILE THR TRP GLN ARG GLN SEQRES 9 A 115 LEU MSE LEU LEU VAL GLU MSE ARG LYS ILE ASP MODRES 3B33 MSE A 13 MET SELENOMETHIONINE MODRES 3B33 MSE A 88 MET SELENOMETHIONINE MODRES 3B33 MSE A 103 MET SELENOMETHIONINE MODRES 3B33 MSE A 108 MET SELENOMETHIONINE HET MSE A 13 13 HET MSE A 88 8 HET MSE A 103 8 HET MSE A 108 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *69(H2 O) HELIX 1 1 SER A 4 MSE A 13 1 10 HELIX 2 2 ASN A 30 PHE A 37 1 8 HELIX 3 3 SER A 40 VAL A 45 1 6 HELIX 4 4 SER A 48 ILE A 53 1 6 HELIX 5 5 LEU A 60 GLY A 70 1 11 SHEET 1 A 6 ILE A 26 ALA A 29 0 SHEET 2 A 6 ALA A 16 LEU A 20 -1 N ILE A 19 O ARG A 27 SHEET 3 A 6 GLN A 101 LYS A 110 -1 O VAL A 106 N LEU A 18 SHEET 4 A 6 ARG A 85 TRP A 98 -1 N SER A 94 O LEU A 105 SHEET 5 A 6 ILE A 73 VAL A 82 -1 N PHE A 80 O LEU A 87 SHEET 6 A 6 HIS A 55 SER A 57 -1 N HIS A 55 O VAL A 81 LINK C ASN A 12 N MSE A 13 1555 1555 1.31 LINK C MSE A 13 N VAL A 14 1555 1555 1.33 LINK C LEU A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N LEU A 89 1555 1555 1.34 LINK C LEU A 102 N MSE A 103 1555 1555 1.33 LINK C MSE A 103 N LEU A 104 1555 1555 1.32 LINK C GLU A 107 N MSE A 108 1555 1555 1.34 LINK C MSE A 108 N ARG A 109 1555 1555 1.34 CRYST1 81.115 81.115 67.467 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012328 0.007118 0.000000 0.00000 SCALE2 0.000000 0.014235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014822 0.00000 MASTER 509 0 4 5 6 0 0 6 0 0 0 9 END