HEADER RECOMBINATION 18-FEB-11 3AV0 TITLE CRYSTAL STRUCTURE OF MRE11-RAD50 BOUND TO ATP S COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE DOMAIN (UNP RESIDUES 1-313); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: ABC ATPASE DOMAIN (UNP RESIDUES 1-190, 825-1005); COMPND 10 SYNONYM: RAD50 ABC-ATPASE; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: THE FUSION PROTEIN OF RESIDUES 1-190 AND RESIDUES 825- COMPND 13 1005 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: RAD50, MJ1322; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 11 ORGANISM_TAXID: 2190; SOURCE 12 GENE: RAD50, MJ1322; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR, CALCINEURIN-LIKE PHOSPHOESTERASE, ABC TRANSPORTER ATPASE KEYWDS 2 DOMAIN-LIKE, DNA DOUBLE-STRAND BREAK REPAIR, HERA-NURA COMPLEX, NBS1 KEYWDS 3 IN EUKARYOTES, RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR H.S.LIM,J.S.KIM,Y.CHO REVDAT 2 23-AUG-17 3AV0 1 SOURCE REVDAT 1 25-MAY-11 3AV0 0 JRNL AUTH H.S.LIM,J.S.KIM,Y.B.PARK,G.H.GWON,Y.CHO JRNL TITL CRYSTAL STRUCTURE OF THE MRE11-RAD50-ATP S COMPLEX: JRNL TITL 2 UNDERSTANDING THE INTERPLAY BETWEEN MRE11 AND RAD50 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.3_473) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 20290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3191 - 6.6554 0.99 1984 208 0.1904 0.2164 REMARK 3 2 6.6554 - 5.2927 1.00 1901 202 0.2174 0.3074 REMARK 3 3 5.2927 - 4.6266 1.00 1876 203 0.2054 0.2606 REMARK 3 4 4.6266 - 4.2050 0.99 1876 193 0.1995 0.2794 REMARK 3 5 4.2050 - 3.9043 0.99 1829 202 0.2218 0.2865 REMARK 3 6 3.9043 - 3.6746 0.98 1845 189 0.2262 0.3115 REMARK 3 7 3.6746 - 3.4909 0.98 1828 194 0.2379 0.2790 REMARK 3 8 3.4909 - 3.3391 0.97 1799 196 0.2530 0.3642 REMARK 3 9 3.3391 - 3.2107 0.95 1742 187 0.2691 0.3557 REMARK 3 10 3.2107 - 3.1001 0.89 1649 187 0.2840 0.3694 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 59.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.91470 REMARK 3 B22 (A**2) : -14.45840 REMARK 3 B33 (A**2) : 16.37310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6175 REMARK 3 ANGLE : 1.398 8288 REMARK 3 CHIRALITY : 0.081 890 REMARK 3 PLANARITY : 0.005 1054 REMARK 3 DIHEDRAL : 21.206 2399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000029728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 4-CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20290 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1II7, 3AUY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 3350, 0.1M ADA PH6.2, 0.1M REMARK 280 LITHIUM SULFATE, 2% ISO-PROPANOL, 5% ACETONITRILE , 1MM ATP, 5MM REMARK 280 MAGNESSIUM CHLORIDE , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.95350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.95350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.47900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.56450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.47900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.56450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.95350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.47900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.56450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.95350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.47900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.56450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLU B 190 REMARK 465 GLU B 825 REMARK 465 SER B 826 REMARK 465 LEU B 827 REMARK 465 LYS B 828 REMARK 465 ALA B 829 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 177 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -1 92.86 41.54 REMARK 500 ASP A 8 73.71 42.43 REMARK 500 TYR A 16 37.25 31.01 REMARK 500 LYS A 34 -72.87 -52.99 REMARK 500 LYS A 40 47.45 24.90 REMARK 500 ASN A 74 34.57 -88.20 REMARK 500 ARG A 90 66.79 -116.15 REMARK 500 LEU A 91 139.77 -26.74 REMARK 500 ASP A 102 57.67 -99.83 REMARK 500 TYR A 103 -15.75 -161.38 REMARK 500 ASP A 108 53.23 -157.01 REMARK 500 GLU A 135 -16.04 -47.26 REMARK 500 LEU A 167 -93.20 -83.06 REMARK 500 HIS A 173 -71.04 -43.53 REMARK 500 HIS A 186 -43.09 117.09 REMARK 500 PHE A 195 126.52 174.96 REMARK 500 ASP A 197 77.60 40.27 REMARK 500 SER A 205 -167.76 -67.95 REMARK 500 PHE A 229 45.75 -99.38 REMARK 500 SER A 230 -77.80 -71.59 REMARK 500 ARG A 269 27.45 -65.73 REMARK 500 LYS A 271 -76.17 -35.06 REMARK 500 ILE A 280 105.38 -161.07 REMARK 500 ASP A 289 -12.81 -49.85 REMARK 500 LYS A 292 9.15 -65.13 REMARK 500 ILE A 308 47.32 -145.78 REMARK 500 ILE A 316 95.71 -45.17 REMARK 500 LEU A 319 106.39 -58.17 REMARK 500 ARG A 331 -35.80 -34.34 REMARK 500 ASP A 335 90.81 -57.15 REMARK 500 LEU A 338 -65.96 -93.03 REMARK 500 ASN A 348 6.87 -53.35 REMARK 500 GLU A 358 -82.76 -60.20 REMARK 500 THR A 362 -74.98 -45.80 REMARK 500 ARG A 365 77.02 -102.72 REMARK 500 LYS B 14 -120.26 42.65 REMARK 500 ALA B 29 88.32 -154.51 REMARK 500 GLU B 33 -171.57 -52.98 REMARK 500 PHE B 47 -72.34 -68.36 REMARK 500 ALA B 48 -63.86 -18.46 REMARK 500 ALA B 52 111.75 -38.97 REMARK 500 SER B 54 162.30 -44.47 REMARK 500 PHE B 56 -165.80 -65.76 REMARK 500 LYS B 64 -7.60 -52.21 REMARK 500 LYS B 66 -159.48 -83.63 REMARK 500 LYS B 67 -36.05 -141.21 REMARK 500 ASN B 80 -171.83 -46.30 REMARK 500 TYR B 88 119.74 -170.84 REMARK 500 SER B 90 96.86 2.38 REMARK 500 ASN B 100 -8.41 71.22 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1007 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AGS B1006 O3G REMARK 620 2 SER B 39 OG 122.8 REMARK 620 3 AGS B1006 O2B 76.9 70.4 REMARK 620 4 GLN B 134 OE1 94.7 112.7 171.1 REMARK 620 5 HOH B1401 O 156.9 59.3 121.1 66.3 REMARK 620 6 HOH B1400 O 65.4 74.6 98.7 74.8 95.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AUX RELATED DB: PDB REMARK 900 RELATED ID: 3AUY RELATED DB: PDB REMARK 900 RELATED ID: 3AUZ RELATED DB: PDB DBREF 3AV0 A 1 366 UNP Q58719 MRE11_METJA 1 366 DBREF 3AV0 B 1 190 UNP Q58718 RAD50_METJA 1 190 DBREF 3AV0 B 825 1005 UNP Q58718 RAD50_METJA 825 1005 SEQADV 3AV0 MET A -19 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 GLY A -18 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 SER A -17 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 SER A -16 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 HIS A -15 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 HIS A -14 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 HIS A -13 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 HIS A -12 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 HIS A -11 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 HIS A -10 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 SER A -9 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 SER A -8 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 GLY A -7 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 LEU A -6 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 VAL A -5 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 PRO A -4 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 ARG A -3 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 GLY A -2 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 SER A -1 UNP Q58719 EXPRESSION TAG SEQADV 3AV0 HIS A 0 UNP Q58719 EXPRESSION TAG SEQRES 1 A 386 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 386 LEU VAL PRO ARG GLY SER HIS MET MET PHE VAL HIS ILE SEQRES 3 A 386 ALA ASP ASN HIS LEU GLY TYR ARG GLN TYR ASN LEU ASP SEQRES 4 A 386 ASP ARG GLU LYS ASP ILE TYR ASP SER PHE LYS LEU CYS SEQRES 5 A 386 ILE LYS LYS ILE LEU GLU ILE LYS PRO ASP VAL VAL LEU SEQRES 6 A 386 HIS SER GLY ASP LEU PHE ASN ASP LEU ARG PRO PRO VAL SEQRES 7 A 386 LYS ALA LEU ARG ILE ALA MET GLN ALA PHE LYS LYS LEU SEQRES 8 A 386 HIS GLU ASN ASN ILE LYS VAL TYR ILE VAL ALA GLY ASN SEQRES 9 A 386 HIS GLU MET PRO ARG ARG LEU GLY GLU GLU SER PRO LEU SEQRES 10 A 386 ALA LEU LEU LYS ASP TYR VAL LYS ILE LEU ASP GLY LYS SEQRES 11 A 386 ASP VAL ILE ASN VAL ASN GLY GLU GLU ILE PHE ILE CYS SEQRES 12 A 386 GLY THR TYR TYR HIS LYS LYS SER LYS ARG GLU GLU MET SEQRES 13 A 386 LEU ASP LYS LEU LYS ASN PHE GLU SER GLU ALA LYS ASN SEQRES 14 A 386 TYR LYS LYS LYS ILE LEU MET LEU HIS GLN GLY ILE ASN SEQRES 15 A 386 PRO TYR ILE PRO LEU ASP TYR GLU LEU GLU HIS PHE ASP SEQRES 16 A 386 LEU PRO LYS PHE SER TYR TYR ALA LEU GLY HIS ILE HIS SEQRES 17 A 386 LYS ARG ILE LEU GLU ARG PHE ASN ASP GLY ILE LEU ALA SEQRES 18 A 386 TYR SER GLY SER THR GLU ILE ILE TYR ARG ASN GLU TYR SEQRES 19 A 386 GLU ASP TYR LYS LYS GLU GLY LYS GLY PHE TYR LEU VAL SEQRES 20 A 386 ASP PHE SER GLY ASN ASP LEU ASP ILE SER ASP ILE GLU SEQRES 21 A 386 LYS ILE ASP ILE GLU CYS ARG GLU PHE VAL GLU VAL ASN SEQRES 22 A 386 ILE LYS ASP LYS LYS SER PHE ASN GLU ALA VAL ASN LYS SEQRES 23 A 386 ILE GLU ARG CYS LYS ASN LYS PRO VAL VAL PHE GLY LYS SEQRES 24 A 386 ILE LYS ARG GLU PHE LYS PRO TRP PHE ASP THR LEU LYS SEQRES 25 A 386 ASP LYS ILE LEU ILE ASN LYS ALA ILE ILE VAL ASP ASP SEQRES 26 A 386 GLU PHE ILE ASP MET PRO ASP ASN VAL ASP ILE GLU SER SEQRES 27 A 386 LEU ASN ILE LYS GLU LEU LEU VAL ASP TYR ALA ASN ARG SEQRES 28 A 386 GLN GLY ILE ASP GLY ASP LEU VAL LEU SER LEU TYR LYS SEQRES 29 A 386 ALA LEU LEU ASN ASN GLU ASN TRP LYS GLU LEU LEU ASP SEQRES 30 A 386 GLU TYR TYR ASN THR LYS PHE ARG GLY SEQRES 1 B 371 MET SER MET ILE LEU LYS GLU ILE ARG MET ASN ASN PHE SEQRES 2 B 371 LYS SER HIS VAL ASN SER ARG ILE LYS PHE GLU LYS GLY SEQRES 3 B 371 ILE VAL ALA ILE ILE GLY GLU ASN GLY SER GLY LYS SER SEQRES 4 B 371 SER ILE PHE GLU ALA VAL PHE PHE ALA LEU PHE GLY ALA SEQRES 5 B 371 GLY SER ASN PHE ASN TYR ASP THR ILE ILE THR LYS GLY SEQRES 6 B 371 LYS LYS SER VAL TYR VAL GLU LEU ASP PHE GLU VAL ASN SEQRES 7 B 371 GLY ASN ASN TYR LYS ILE ILE ARG GLU TYR ASP SER GLY SEQRES 8 B 371 ARG GLY GLY ALA LYS LEU TYR LYS ASN GLY LYS PRO TYR SEQRES 9 B 371 ALA THR THR ILE SER ALA VAL ASN LYS ALA VAL ASN GLU SEQRES 10 B 371 ILE LEU GLY VAL ASP ARG ASN MET PHE LEU ASN SER ILE SEQRES 11 B 371 TYR ILE LYS GLN GLY GLU ILE ALA LYS PHE LEU SER LEU SEQRES 12 B 371 LYS PRO SER GLU LYS LEU GLU THR VAL ALA LYS LEU LEU SEQRES 13 B 371 GLY ILE ASP GLU PHE GLU LYS CYS TYR GLN LYS MET GLY SEQRES 14 B 371 GLU ILE VAL LYS GLU TYR GLU LYS ARG LEU GLU ARG ILE SEQRES 15 B 371 GLU GLY GLU LEU ASN TYR LYS GLU GLU SER LEU LYS ALA SEQRES 16 B 371 ARG LEU LYS GLU MET SER ASN LEU GLU LYS GLU LYS GLU SEQRES 17 B 371 LYS LEU THR LYS PHE VAL GLU TYR LEU ASP LYS VAL ARG SEQRES 18 B 371 ARG ILE PHE GLY ARG ASN GLY PHE GLN ALA TYR LEU ARG SEQRES 19 B 371 GLU LYS TYR VAL PRO LEU ILE GLN LYS TYR LEU ASN GLU SEQRES 20 B 371 ALA PHE SER GLU PHE ASP LEU PRO TYR SER PHE VAL GLU SEQRES 21 B 371 LEU THR LYS ASP PHE GLU VAL ARG VAL HIS ALA PRO ASN SEQRES 22 B 371 GLY VAL LEU THR ILE ASP ASN LEU SER GLY GLY GLU GLN SEQRES 23 B 371 ILE ALA VAL ALA LEU SER LEU ARG LEU ALA ILE ALA ASN SEQRES 24 B 371 ALA LEU ILE GLY ASN ARG VAL GLU CYS ILE ILE LEU ASP SEQRES 25 B 371 GLU PRO THR VAL TYR LEU ASP GLU ASN ARG ARG ALA LYS SEQRES 26 B 371 LEU ALA GLU ILE PHE ARG LYS VAL LYS SER ILE PRO GLN SEQRES 27 B 371 MET ILE ILE ILE THR HIS HIS ARG GLU LEU GLU ASP VAL SEQRES 28 B 371 ALA ASP VAL ILE ILE ASN VAL LYS LYS ASP GLY ASN VAL SEQRES 29 B 371 SER LYS VAL LYS ILE ASN GLY HET GOL A 500 6 HET IPA A 600 4 HET SO4 A 400 5 HET IPA B 601 4 HET AGS B1006 31 HET MG B1007 1 HET GOL B1200 6 HET GOL B1201 6 HET GOL B1202 6 HET IPA B1300 4 HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETNAM SO4 SULFATE ION HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 GOL 4(C3 H8 O3) FORMUL 4 IPA 3(C3 H8 O) FORMUL 5 SO4 O4 S 2- FORMUL 7 AGS C10 H16 N5 O12 P3 S FORMUL 8 MG MG 2+ FORMUL 13 HOH *20(H2 O) HELIX 1 1 ARG A 14 ASN A 17 5 4 HELIX 2 2 LEU A 18 GLU A 38 1 21 HELIX 3 3 PRO A 57 ASN A 74 1 18 HELIX 4 4 GLY A 83 MET A 87 5 5 HELIX 5 5 SER A 95 LYS A 101 5 7 HELIX 6 6 LYS A 132 ASN A 149 1 18 HELIX 7 7 GLU A 172 LEU A 176 5 5 HELIX 8 8 TYR A 210 GLU A 213 5 4 HELIX 9 9 TYR A 214 GLY A 221 1 8 HELIX 10 10 ASP A 235 SER A 237 5 3 HELIX 11 11 ASP A 256 GLU A 268 1 13 HELIX 12 12 GLU A 283 LYS A 285 5 3 HELIX 13 13 PHE A 288 LYS A 292 5 5 HELIX 14 14 ASN A 320 GLY A 333 1 14 HELIX 15 15 ASP A 335 ASN A 348 1 14 HELIX 16 16 ASN A 351 LYS A 363 1 13 HELIX 17 17 SER B 39 GLY B 51 1 13 HELIX 18 18 THR B 107 ASN B 116 1 10 HELIX 19 19 ALA B 138 LEU B 143 5 6 HELIX 20 20 LYS B 144 LEU B 156 1 13 HELIX 21 21 GLY B 157 LEU B 186 1 30 HELIX 22 22 SER B 835 ARG B 856 1 22 HELIX 23 23 ILE B 857 GLY B 859 5 3 HELIX 24 24 GLY B 862 LYS B 870 1 9 HELIX 25 25 TYR B 871 SER B 884 1 14 HELIX 26 26 GLU B 885 ASP B 887 5 3 HELIX 27 27 SER B 916 LEU B 935 1 20 HELIX 28 28 ASP B 953 VAL B 967 1 15 HELIX 29 29 HIS B 979 ASP B 984 1 6 SHEET 1 A 6 LYS A 105 ILE A 106 0 SHEET 2 A 6 LYS A 77 ILE A 80 1 N ILE A 80 O LYS A 105 SHEET 3 A 6 VAL A 43 HIS A 46 1 N HIS A 46 O TYR A 79 SHEET 4 A 6 MET A 2 ILE A 6 1 N ILE A 6 O LEU A 45 SHEET 5 A 6 GLY A 223 ASP A 228 -1 O TYR A 225 N HIS A 5 SHEET 6 A 6 ILE A 239 ASP A 243 -1 O GLU A 240 N LEU A 226 SHEET 1 B 6 GLY A 109 VAL A 115 0 SHEET 2 B 6 GLU A 118 THR A 125 -1 O ILE A 122 N ASP A 111 SHEET 3 B 6 LYS A 153 LEU A 157 1 O ILE A 154 N PHE A 121 SHEET 4 B 6 TYR A 181 LEU A 184 1 O TYR A 181 N LEU A 155 SHEET 5 B 6 ILE A 199 TYR A 202 1 O ALA A 201 N LEU A 184 SHEET 6 B 6 ILE A 191 ARG A 194 -1 N ILE A 191 O TYR A 202 SHEET 1 C 3 PHE A 249 ILE A 254 0 SHEET 2 C 3 VAL A 275 LYS A 281 1 O LYS A 281 N ILE A 254 SHEET 3 C 3 ILE A 297 VAL A 303 1 O ILE A 301 N GLY A 278 SHEET 1 D 5 HIS B 16 LYS B 22 0 SHEET 2 D 5 MET B 3 PHE B 13 -1 N ASN B 12 O VAL B 17 SHEET 3 D 5 TYR B 70 VAL B 77 -1 O ASP B 74 N GLU B 7 SHEET 4 D 5 TYR B 82 ARG B 86 -1 O TYR B 82 N PHE B 75 SHEET 5 D 5 ALA B 95 LYS B 99 -1 O TYR B 98 N LYS B 83 SHEET 1 E 4 GLY B 26 ILE B 30 0 SHEET 2 E 4 GLN B 972 ILE B 976 1 O MET B 973 N GLY B 26 SHEET 3 E 4 ILE B 943 ASP B 946 1 N ILE B 943 O GLN B 972 SHEET 4 E 4 TYR B 131 ILE B 132 1 N ILE B 132 O ILE B 944 SHEET 1 F 3 VAL B 893 LEU B 895 0 SHEET 2 F 3 VAL B 901 ALA B 905 -1 O ARG B 902 N GLU B 894 SHEET 3 F 3 GLY B 908 THR B 911 -1 O LEU B 910 N VAL B 903 SHEET 1 G 2 VAL B 992 ASP B 995 0 SHEET 2 G 2 VAL B 998 VAL B1001 -1 O LYS B1000 N LYS B 993 LINK O3G AGS B1006 MG MG B1007 1555 1555 2.24 LINK OG SER B 39 MG MG B1007 1555 1555 2.27 LINK O2B AGS B1006 MG MG B1007 1555 1555 2.38 LINK OE1 GLN B 134 MG MG B1007 1555 1555 2.39 LINK MG MG B1007 O HOH B1401 1555 1555 2.26 LINK MG MG B1007 O HOH B1400 1555 1555 2.48 SITE 1 AC1 4 LYS A 30 LYS A 59 ARG A 62 HOH A 701 SITE 1 AC2 4 ASP A 108 TYR A 126 GLU A 135 LYS A 139 SITE 1 AC3 4 ARG A 211 SO4 A 400 GLU B 885 ASP B 887 SITE 1 AC4 5 GLN A 15 TYR A 16 TYR A 210 ARG A 211 SITE 2 AC4 5 IPA B 601 SITE 1 AC5 25 LYS B 14 SER B 15 ASN B 34 GLY B 35 SITE 2 AC5 25 SER B 36 GLY B 37 LYS B 38 SER B 39 SITE 3 AC5 25 SER B 40 THR B 60 ILE B 62 THR B 63 SITE 4 AC5 25 LYS B 64 GLN B 134 TYR B 890 LEU B 910 SITE 5 AC5 25 ASN B 914 SER B 916 GLY B 917 GLY B 918 SITE 6 AC5 25 GLU B 919 GLU B 947 LYS B 994 MG B1007 SITE 7 AC5 25 HOH B1400 SITE 1 AC6 5 SER B 39 GLN B 134 AGS B1006 HOH B1400 SITE 2 AC6 5 HOH B1401 SITE 1 AC7 2 GLY B 135 TYR B 951 SITE 1 AC8 5 THR B 949 VAL B 950 TYR B 951 HIS B 978 SITE 2 AC8 5 HIS B 979 SITE 1 AC9 6 ASP B 59 LYS B 64 GLY B 65 LYS B 66 SITE 2 AC9 6 HOH B1404 HOH B1408 SITE 1 BC1 4 GLN B 134 GLY B 917 GLN B 920 TYR B 951 CRYST1 86.958 147.129 175.907 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011500 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005685 0.00000 MASTER 398 0 10 29 29 0 20 6 0 0 0 59 END